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The map label for this gene is ydaM [H]

Identifier: 83592880

GI number: 83592880

Start: 1820592

End: 1821230

Strand: Reverse

Name: ydaM [H]

Synonym: Rru_A1545

Alternate gene names: 83592880

Gene position: 1821230-1820592 (Counterclockwise)

Preceding gene: 83592881

Following gene: 83592878

Centisome position: 41.84

GC content: 62.75

Gene sequence:

>639_bases
ATGACTTCACAGGAAGCCAAAACCATCGAAGGCCTCAAGGCCGACCTCGCCCGCCTTCGGGAAATCCTCAGCATCACGGA
AGACAATCTGCGGGCCAGCCAGAACGAGGTGTTGCGCCTGTCGACCATCGACCCCCTGACCTCGGTGTTGAGCCGCCGTC
ATTTCATGGATATCGCCGATCAGGAAATTAGCCGGGCCCGTCGTTACAAGCGGCCGCTTGCCGTTCTCGCCATCGAACTC
GATAACATCAAGGCGATCAACGAAGTCCACGGAACCGAGCGCGGCGATGCGGTATTGGTCGCGGTCGGCGCGGCCGTTCT
GCGCAGCCTGCGCGCCACCGATTTCGTCGGCCGCACCGCCGGATCGGAATTCACCGTGATGCTGCCCGAAACCGAGCACG
AGGGCTGCATGAGTCTGGCCGAACGTTTGGTCGCCGACCTTGCCCGCGCCGCCGCCGCCGAGGTTGGCAATACGACGCCC
CTGCCCACGGTCAGCATCGGCGCCACCCATTTCGTTCGCGAAGACGTGATTTTCGATACGGTGGTTCAACGCGTCGATCA
GGCGATGGAACGCGCCCATGCCGCCGGCGGCAACCGCACCCTTTATCTGGGGGCCAATCAGATTGAGGCCGAGTTCTGA

Upstream 100 bases:

>100_bases
AGCCTATACACTGCGCCGACCTTTTCCCAGAAGGTCGCTTTTTTGTCATGCGGGTCCGGTTGTGGCCCCGCGCCGCAGTG
GGCAGGAGCTATAAACGTCG

Downstream 100 bases:

>100_bases
TCGGCGATCAGCCCCAAGACCGCTTCCGGCCGCCGCTTAAAGGGCCCCCACCGAAAGACCAAGATCGCCGCCCTCGGCGA
ACTCCGTCCCCAGCGCGGCC

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 212; Mature: 211

Protein sequence:

>212_residues
MTSQEAKTIEGLKADLARLREILSITEDNLRASQNEVLRLSTIDPLTSVLSRRHFMDIADQEISRARRYKRPLAVLAIEL
DNIKAINEVHGTERGDAVLVAVGAAVLRSLRATDFVGRTAGSEFTVMLPETEHEGCMSLAERLVADLARAAAAEVGNTTP
LPTVSIGATHFVREDVIFDTVVQRVDQAMERAHAAGGNRTLYLGANQIEAEF

Sequences:

>Translated_212_residues
MTSQEAKTIEGLKADLARLREILSITEDNLRASQNEVLRLSTIDPLTSVLSRRHFMDIADQEISRARRYKRPLAVLAIEL
DNIKAINEVHGTERGDAVLVAVGAAVLRSLRATDFVGRTAGSEFTVMLPETEHEGCMSLAERLVADLARAAAAEVGNTTP
LPTVSIGATHFVREDVIFDTVVQRVDQAMERAHAAGGNRTLYLGANQIEAEF
>Mature_211_residues
TSQEAKTIEGLKADLARLREILSITEDNLRASQNEVLRLSTIDPLTSVLSRRHFMDIADQEISRARRYKRPLAVLAIELD
NIKAINEVHGTERGDAVLVAVGAAVLRSLRATDFVGRTAGSEFTVMLPETEHEGCMSLAERLVADLARAAAAEVGNTTPL
PTVSIGATHFVREDVIFDTVVQRVDQAMERAHAAGGNRTLYLGANQIEAEF

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=162, Percent_Identity=34.5679012345679, Blast_Score=84, Evalue=6e-18,
Organism=Escherichia coli, GI145693134, Length=157, Percent_Identity=31.8471337579618, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1786584, Length=168, Percent_Identity=29.7619047619048, Blast_Score=74, Evalue=5e-15,
Organism=Escherichia coli, GI1787262, Length=174, Percent_Identity=28.735632183908, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI87082007, Length=174, Percent_Identity=28.1609195402299, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 23150; Mature: 23018

Theoretical pI: Translated: 5.15; Mature: 5.15

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSQEAKTIEGLKADLARLREILSITEDNLRASQNEVLRLSTIDPLTSVLSRRHFMDIAD
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHH
QEISRARRYKRPLAVLAIELDNIKAINEVHGTERGDAVLVAVGAAVLRSLRATDFVGRTA
HHHHHHHHHHCCCEEEEEECCCHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHCCC
GSEFTVMLPETEHEGCMSLAERLVADLARAAAAEVGNTTPLPTVSIGATHFVREDVIFDT
CCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHHHH
VVQRVDQAMERAHAAGGNRTLYLGANQIEAEF
HHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
>Mature Secondary Structure 
TSQEAKTIEGLKADLARLREILSITEDNLRASQNEVLRLSTIDPLTSVLSRRHFMDIAD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHH
QEISRARRYKRPLAVLAIELDNIKAINEVHGTERGDAVLVAVGAAVLRSLRATDFVGRTA
HHHHHHHHHHCCCEEEEEECCCHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHCCC
GSEFTVMLPETEHEGCMSLAERLVADLARAAAAEVGNTTPLPTVSIGATHFVREDVIFDT
CCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHHHH
VVQRVDQAMERAHAAGGNRTLYLGANQIEAEF
HHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]