| Definition | Rhodospirillum rubrum ATCC 11170 chromosome, complete genome. |
|---|---|
| Accession | NC_007643 |
| Length | 4,352,825 |
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The map label for this gene is yjjK [C]
Identifier: 83592862
GI number: 83592862
Start: 1796981
End: 1798660
Strand: Direct
Name: yjjK [C]
Synonym: Rru_A1527
Alternate gene names: 83592862
Gene position: 1796981-1798660 (Clockwise)
Preceding gene: 83592859
Following gene: 83592864
Centisome position: 41.28
GC content: 63.33
Gene sequence:
>1680_bases ATGGCCTCCTATCAGTATGTCTATGTGATGAAGAACCTGAGCAAGGTCTATCCCGGCGGGAAGGAGATCTTGAAGGGGCT TTCGCTCTCGTTCTTGCCCGGGGCCAAGATCGGCGTGCTCGGTCCCAACGGGGCGGGCAAGTCCACCGTTCTGCGCATCA TGGCCGGCATCGACAAGGAGTTCGGCGGCGAGGCCTGGGCCGCCGATGGCGTGAAGATCGGCTATCTGGCCCAGGAGCCC GATCTCGATCCGGCCAAGGACGTGATGGGCAACGTGATGGACGGCGTCGGCCCGATGAAGGCCCTGCTCGATCGCTTCGA AGAGGTCAGCGCCAAGTTCGGCGAAGTCGTCGATGACGACGAGATGAACGCCCTGATCGCCGAACAGGCCGAAATCCAGG AAAAGATCGACGCCGCCGACGGCTGGGACCTGCAGCGTCAGGTCGAAATCGCCATGGACGCCCTGCGCTGCCCGCCCGGC GAGGCGGATGTGACCAAGCTGTCGGGCGGTGAACGCCGCCGGGTGGCCCTCTGCCGCCTGCTGCTGTCCAAGCCCGACAT GCTGCTGCTTGACGAACCGACCAACCATCTGGACGCGGAATCGGTGGGCTGGCTGGAACACTTCCTTCAGCAATATCCGG GCACCGTCGTGGCGATCACCCATGATCGCTACTTCCTGGACAATGCCGCCAATTGGATCTTGGAAGTCGACCGCGGGCGC GGCATTCCCTATGAGGGGAATTATTCGACCTATCTGGAGAACAAGCAAAAGCGCCTGGAGCAGGAATCCCGCGAGGAGGG GGCGCGCGACAAGACCATTTCGCGCGAACTGGAATGGATCCGCCAGTCGCCCAAGGCCCGTCAGGCCAAAAGCAAGGCGC GTATCACCGCTTATGAAAACCTGGTGGCCTCGGCCGGAAGCCAGAAGGTGGAAAGCGCCCAGATCGTCATTCCCATCGCC GAACGCCTGGGCGGCGTGGTGATCGAGGCCGAAGGGCTGACCAAGGGCTTTGGCGACCGTCTGCTGATCGACGATCTGAC CTTCCGCCTGCCGCCGGGCGGCATCGTCGGCGTCATCGGCGCCAATGGCGCGGGCAAGACGACGCTGTTCAAGATGATCA CCGGCAAGGACCAGCCCGACAGCGGCGCCATCCGCATCGGCGAAACGGTGCGCCTGGGCTATGTCGACCAGAGCCGCGAC GCCCTCGACCCCAACAAGACCGTGTGGCAGGAAATCTCCGACGGTCAGGACGAGCTGGATCTGGGCAAGCGCAAGATCCC CAGCCGCGCCTATGTCGGCCAGTTCAACTTCAAGGGCAGCGATCAGCAAAAGAAGGTCGGTCAGCTCTCAGGGGGCGAGC GCAACCGGGTGCATCTGGCCAAGATGCTGAAGTCGCATGCCAATGTGCTGCTGCTTGACGAACCGACCAACGACCTGGAC GTCGAGACCCTGCGCGCCCTGGAAGACGCCCTGCTGGAATTCGCCGGCTGCGCCGTGGTCATCTCCCATGATCGCTGGTT CCTTGACCGCATCGCCACCCACATCCTGTCCTTCGAGGGCGACTCCCATGTGGAATGGTTCGAGGGCAACTTCGAGGCTT ACGAGGCCGACAAGAAGCGCCGCCTGGGCGCCGACGCCGACCAGCCCCATCGCCTGAAGTACAAGCCTCTCAGCCGCTAA
Upstream 100 bases:
>100_bases TTGCTTTGGAAGGATCAGGCCCCTCTCGGGTCGGCCCTGTCTTTTGCTGAAGTCCAGTCCACTGGGCGCTCCCTCTTTCT CCAGCAATGCGGAGCGGCCC
Downstream 100 bases:
>100_bases AACTTGCGGCTTGGCCAAAGAAAAGGGGGGCGCCGACGATCAGGTCGGCGCCCCCCTTTTTTGACGTGATCACCTTAGCC GGCGCGGGCGCGCAGCTCGG
Product: putative ABC transporter ATP-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 559; Mature: 558
Protein sequence:
>559_residues MASYQYVYVMKNLSKVYPGGKEILKGLSLSFLPGAKIGVLGPNGAGKSTVLRIMAGIDKEFGGEAWAADGVKIGYLAQEP DLDPAKDVMGNVMDGVGPMKALLDRFEEVSAKFGEVVDDDEMNALIAEQAEIQEKIDAADGWDLQRQVEIAMDALRCPPG EADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVGWLEHFLQQYPGTVVAITHDRYFLDNAANWILEVDRGR GIPYEGNYSTYLENKQKRLEQESREEGARDKTISRELEWIRQSPKARQAKSKARITAYENLVASAGSQKVESAQIVIPIA ERLGGVVIEAEGLTKGFGDRLLIDDLTFRLPPGGIVGVIGANGAGKTTLFKMITGKDQPDSGAIRIGETVRLGYVDQSRD ALDPNKTVWQEISDGQDELDLGKRKIPSRAYVGQFNFKGSDQQKKVGQLSGGERNRVHLAKMLKSHANVLLLDEPTNDLD VETLRALEDALLEFAGCAVVISHDRWFLDRIATHILSFEGDSHVEWFEGNFEAYEADKKRRLGADADQPHRLKYKPLSR
Sequences:
>Translated_559_residues MASYQYVYVMKNLSKVYPGGKEILKGLSLSFLPGAKIGVLGPNGAGKSTVLRIMAGIDKEFGGEAWAADGVKIGYLAQEP DLDPAKDVMGNVMDGVGPMKALLDRFEEVSAKFGEVVDDDEMNALIAEQAEIQEKIDAADGWDLQRQVEIAMDALRCPPG EADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVGWLEHFLQQYPGTVVAITHDRYFLDNAANWILEVDRGR GIPYEGNYSTYLENKQKRLEQESREEGARDKTISRELEWIRQSPKARQAKSKARITAYENLVASAGSQKVESAQIVIPIA ERLGGVVIEAEGLTKGFGDRLLIDDLTFRLPPGGIVGVIGANGAGKTTLFKMITGKDQPDSGAIRIGETVRLGYVDQSRD ALDPNKTVWQEISDGQDELDLGKRKIPSRAYVGQFNFKGSDQQKKVGQLSGGERNRVHLAKMLKSHANVLLLDEPTNDLD VETLRALEDALLEFAGCAVVISHDRWFLDRIATHILSFEGDSHVEWFEGNFEAYEADKKRRLGADADQPHRLKYKPLSR >Mature_558_residues ASYQYVYVMKNLSKVYPGGKEILKGLSLSFLPGAKIGVLGPNGAGKSTVLRIMAGIDKEFGGEAWAADGVKIGYLAQEPD LDPAKDVMGNVMDGVGPMKALLDRFEEVSAKFGEVVDDDEMNALIAEQAEIQEKIDAADGWDLQRQVEIAMDALRCPPGE ADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVGWLEHFLQQYPGTVVAITHDRYFLDNAANWILEVDRGRG IPYEGNYSTYLENKQKRLEQESREEGARDKTISRELEWIRQSPKARQAKSKARITAYENLVASAGSQKVESAQIVIPIAE RLGGVVIEAEGLTKGFGDRLLIDDLTFRLPPGGIVGVIGANGAGKTTLFKMITGKDQPDSGAIRIGETVRLGYVDQSRDA LDPNKTVWQEISDGQDELDLGKRKIPSRAYVGQFNFKGSDQQKKVGQLSGGERNRVHLAKMLKSHANVLLLDEPTNDLDV ETLRALEDALLEFAGCAVVISHDRWFLDRIATHILSFEGDSHVEWFEGNFEAYEADKKRRLGADADQPHRLKYKPLSR
Specific function: Unknown
COG id: COG0488
COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Homo sapiens, GI148612853, Length=547, Percent_Identity=28.3363802559415, Blast_Score=197, Evalue=3e-50, Organism=Homo sapiens, GI10947137, Length=547, Percent_Identity=29.6160877513711, Blast_Score=184, Evalue=1e-46, Organism=Homo sapiens, GI27881506, Length=547, Percent_Identity=29.6160877513711, Blast_Score=184, Evalue=1e-46, Organism=Homo sapiens, GI69354671, Length=546, Percent_Identity=27.6556776556777, Blast_Score=164, Evalue=2e-40, Organism=Homo sapiens, GI10947135, Length=546, Percent_Identity=27.6556776556777, Blast_Score=163, Evalue=3e-40, Organism=Homo sapiens, GI27881501, Length=179, Percent_Identity=30.1675977653631, Blast_Score=68, Evalue=3e-11, Organism=Homo sapiens, GI31657092, Length=184, Percent_Identity=29.8913043478261, Blast_Score=68, Evalue=3e-11, Organism=Homo sapiens, GI30795238, Length=179, Percent_Identity=30.1675977653631, Blast_Score=68, Evalue=3e-11, Organism=Homo sapiens, GI150417984, Length=189, Percent_Identity=32.2751322751323, Blast_Score=66, Evalue=7e-11, Organism=Escherichia coli, GI2367384, Length=555, Percent_Identity=60.5405405405405, Blast_Score=682, Evalue=0.0, Organism=Escherichia coli, GI1787182, Length=522, Percent_Identity=35.0574712643678, Blast_Score=298, Evalue=5e-82, Organism=Escherichia coli, GI1789751, Length=530, Percent_Identity=32.4528301886792, Blast_Score=259, Evalue=3e-70, Organism=Escherichia coli, GI1787041, Length=523, Percent_Identity=29.8279158699809, Blast_Score=227, Evalue=2e-60, Organism=Escherichia coli, GI87081782, Length=572, Percent_Identity=25.8741258741259, Blast_Score=117, Evalue=3e-27, Organism=Escherichia coli, GI48994943, Length=487, Percent_Identity=26.694045174538, Blast_Score=96, Evalue=4e-21, Organism=Escherichia coli, GI87081709, Length=193, Percent_Identity=30.0518134715026, Blast_Score=87, Evalue=4e-18, Organism=Escherichia coli, GI1788165, Length=185, Percent_Identity=32.4324324324324, Blast_Score=86, Evalue=9e-18, Organism=Escherichia coli, GI1790190, Length=506, Percent_Identity=23.3201581027668, Blast_Score=85, Evalue=1e-17, Organism=Escherichia coli, GI87081791, Length=195, Percent_Identity=33.3333333333333, Blast_Score=84, Evalue=2e-17, Organism=Escherichia coli, GI1788761, Length=243, Percent_Identity=29.2181069958848, Blast_Score=80, Evalue=3e-16, Organism=Escherichia coli, GI1788225, Length=253, Percent_Identity=25.6916996047431, Blast_Score=77, Evalue=3e-15, Organism=Escherichia coli, GI1788450, Length=207, Percent_Identity=29.951690821256, Blast_Score=74, Evalue=3e-14, Organism=Escherichia coli, GI1788897, Length=225, Percent_Identity=28.8888888888889, Blast_Score=71, Evalue=2e-13, Organism=Escherichia coli, GI1789593, Length=206, Percent_Identity=32.0388349514563, Blast_Score=69, Evalue=9e-13, Organism=Escherichia coli, GI48995001, Length=202, Percent_Identity=27.2277227722772, Blast_Score=67, Evalue=3e-12, Organism=Escherichia coli, GI1790467, Length=163, Percent_Identity=31.2883435582822, Blast_Score=66, Evalue=5e-12, Organism=Escherichia coli, GI1787712, Length=198, Percent_Identity=27.7777777777778, Blast_Score=66, Evalue=5e-12, Organism=Escherichia coli, GI1787164, Length=195, Percent_Identity=25.6410256410256, Blast_Score=66, Evalue=7e-12, Organism=Escherichia coli, GI1789891, Length=226, Percent_Identity=23.8938053097345, Blast_Score=65, Evalue=9e-12, Organism=Escherichia coli, GI1787758, Length=190, Percent_Identity=28.9473684210526, Blast_Score=65, Evalue=1e-11, Organism=Escherichia coli, GI1786563, Length=190, Percent_Identity=27.8947368421053, Blast_Score=65, Evalue=2e-11, Organism=Escherichia coli, GI87081834, Length=198, Percent_Identity=28.2828282828283, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1788472, Length=207, Percent_Identity=28.0193236714976, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1786872, Length=237, Percent_Identity=26.5822784810127, Blast_Score=64, Evalue=4e-11, Organism=Escherichia coli, GI1789991, Length=219, Percent_Identity=27.8538812785388, Blast_Score=63, Evalue=4e-11, Organism=Escherichia coli, GI1787370, Length=197, Percent_Identity=26.3959390862944, Blast_Score=62, Evalue=1e-10, Organism=Caenorhabditis elegans, GI17559834, Length=552, Percent_Identity=27.3550724637681, Blast_Score=192, Evalue=3e-49, Organism=Caenorhabditis elegans, GI17553372, Length=542, Percent_Identity=29.1512915129151, Blast_Score=188, Evalue=6e-48, Organism=Caenorhabditis elegans, GI17555318, Length=553, Percent_Identity=28.2097649186257, Blast_Score=177, Evalue=1e-44, Organism=Caenorhabditis elegans, GI115534520, Length=276, Percent_Identity=27.536231884058, Blast_Score=86, Evalue=5e-17, Organism=Caenorhabditis elegans, GI71992290, Length=304, Percent_Identity=27.9605263157895, Blast_Score=77, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17510237, Length=203, Percent_Identity=30.5418719211823, Blast_Score=76, Evalue=5e-14, Organism=Caenorhabditis elegans, GI17542146, Length=214, Percent_Identity=24.7663551401869, Blast_Score=72, Evalue=6e-13, Organism=Caenorhabditis elegans, GI17511077, Length=297, Percent_Identity=28.2828282828283, Blast_Score=72, Evalue=9e-13, Organism=Caenorhabditis elegans, GI71988343, Length=268, Percent_Identity=24.2537313432836, Blast_Score=69, Evalue=6e-12, Organism=Caenorhabditis elegans, GI17543740, Length=224, Percent_Identity=27.6785714285714, Blast_Score=67, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17569145, Length=243, Percent_Identity=28.8065843621399, Blast_Score=66, Evalue=5e-11, Organism=Caenorhabditis elegans, GI193202349, Length=236, Percent_Identity=27.5423728813559, Blast_Score=66, Evalue=6e-11, Organism=Caenorhabditis elegans, GI17569143, Length=227, Percent_Identity=27.3127753303965, Blast_Score=65, Evalue=8e-11, Organism=Caenorhabditis elegans, GI71992285, Length=246, Percent_Identity=28.4552845528455, Blast_Score=65, Evalue=9e-11, Organism=Saccharomyces cerevisiae, GI6320874, Length=514, Percent_Identity=29.7665369649805, Blast_Score=192, Evalue=8e-50, Organism=Saccharomyces cerevisiae, GI6321121, Length=546, Percent_Identity=28.2051282051282, Blast_Score=189, Evalue=7e-49, Organism=Saccharomyces cerevisiae, GI6323278, Length=455, Percent_Identity=26.3736263736264, Blast_Score=114, Evalue=6e-26, Organism=Saccharomyces cerevisiae, GI6324314, Length=420, Percent_Identity=27.1428571428571, Blast_Score=113, Evalue=1e-25, Organism=Saccharomyces cerevisiae, GI6325030, Length=412, Percent_Identity=26.6990291262136, Blast_Score=109, Evalue=1e-24, Organism=Saccharomyces cerevisiae, GI6320266, Length=388, Percent_Identity=24.2268041237113, Blast_Score=88, Evalue=4e-18, Organism=Drosophila melanogaster, GI24666836, Length=554, Percent_Identity=30.3249097472924, Blast_Score=199, Evalue=4e-51, Organism=Drosophila melanogaster, GI24642252, Length=562, Percent_Identity=27.5800711743772, Blast_Score=192, Evalue=6e-49, Organism=Drosophila melanogaster, GI18859989, Length=562, Percent_Identity=27.5800711743772, Blast_Score=192, Evalue=6e-49, Organism=Drosophila melanogaster, GI24641342, Length=556, Percent_Identity=26.7985611510791, Blast_Score=183, Evalue=3e-46, Organism=Drosophila melanogaster, GI24666092, Length=208, Percent_Identity=31.7307692307692, Blast_Score=77, Evalue=4e-14, Organism=Drosophila melanogaster, GI281363262, Length=235, Percent_Identity=25.9574468085106, Blast_Score=67, Evalue=3e-11, Organism=Drosophila melanogaster, GI24653245, Length=235, Percent_Identity=25.9574468085106, Blast_Score=67, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022374 - InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 61794; Mature: 61663
Theoretical pI: Translated: 5.05; Mature: 5.05
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASYQYVYVMKNLSKVYPGGKEILKGLSLSFLPGAKIGVLGPNGAGKSTVLRIMAGIDKE CCCCEEEHHHHHHHHHCCCHHHHHHCCCCEECCCCEEEEECCCCCCHHHHHHHHHHCCHH FGGEAWAADGVKIGYLAQEPDLDPAKDVMGNVMDGVGPMKALLDRFEEVSAKFGEVVDDD HCCCEEECCCEEEEEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCC EMNALIAEQAEIQEKIDAADGWDLQRQVEIAMDALRCPPGEADVTKLSGGERRRVALCRL HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHH LLSKPDMLLLDEPTNHLDAESVGWLEHFLQQYPGTVVAITHDRYFLDNAANWILEVDRGR HHCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCEECCCCCCEEEEEECCC GIPYEGNYSTYLENKQKRLEQESREEGARDKTISRELEWIRQSPKARQAKSKARITAYEN CCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH LVASAGSQKVESAQIVIPIAERLGGVVIEAEGLTKGFGDRLLIDDLTFRLPPGGIVGVIG HHHHCCCCCCCCCEEEEEEHHHHCCEEEEECCCCCCCCCEEEEECCEEECCCCCEEEEEE ANGAGKTTLFKMITGKDQPDSGAIRIGETVRLGYVDQSRDALDPNKTVWQEISDGQDELD CCCCCCCEEEEEECCCCCCCCCCEEECCEEEEEECCCCCCCCCCCHHHHHHHCCCCHHHH LGKRKIPSRAYVGQFNFKGSDQQKKVGQLSGGERNRVHLAKMLKSHANVLLLDEPTNDLD HHHHCCCCCCEEEECCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCC VETLRALEDALLEFAGCAVVISHDRWFLDRIATHILSFEGDSHVEWFEGNFEAYEADKKR HHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEECCCCHHHHCHHHH RLGADADQPHRLKYKPLSR HCCCCCCCCCCCCCCCCCC >Mature Secondary Structure ASYQYVYVMKNLSKVYPGGKEILKGLSLSFLPGAKIGVLGPNGAGKSTVLRIMAGIDKE CCCEEEHHHHHHHHHCCCHHHHHHCCCCEECCCCEEEEECCCCCCHHHHHHHHHHCCHH FGGEAWAADGVKIGYLAQEPDLDPAKDVMGNVMDGVGPMKALLDRFEEVSAKFGEVVDDD HCCCEEECCCEEEEEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCC EMNALIAEQAEIQEKIDAADGWDLQRQVEIAMDALRCPPGEADVTKLSGGERRRVALCRL HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHH LLSKPDMLLLDEPTNHLDAESVGWLEHFLQQYPGTVVAITHDRYFLDNAANWILEVDRGR HHCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCEECCCCCCEEEEEECCC GIPYEGNYSTYLENKQKRLEQESREEGARDKTISRELEWIRQSPKARQAKSKARITAYEN CCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH LVASAGSQKVESAQIVIPIAERLGGVVIEAEGLTKGFGDRLLIDDLTFRLPPGGIVGVIG HHHHCCCCCCCCCEEEEEEHHHHCCEEEEECCCCCCCCCEEEEECCEEECCCCCEEEEEE ANGAGKTTLFKMITGKDQPDSGAIRIGETVRLGYVDQSRDALDPNKTVWQEISDGQDELD CCCCCCCEEEEEECCCCCCCCCCEEECCEEEEEECCCCCCCCCCCHHHHHHHCCCCHHHH LGKRKIPSRAYVGQFNFKGSDQQKKVGQLSGGERNRVHLAKMLKSHANVLLLDEPTNDLD HHHHCCCCCCEEEECCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCC VETLRALEDALLEFAGCAVVISHDRWFLDRIATHILSFEGDSHVEWFEGNFEAYEADKKR HHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEECCCCHHHHCHHHH RLGADADQPHRLKYKPLSR HCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7542800; 10675023 [H]