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The map label for this gene is cspA [C]

Identifier: 83592856

GI number: 83592856

Start: 1792483

End: 1792689

Strand: Reverse

Name: cspA [C]

Synonym: Rru_A1521

Alternate gene names: 83592856

Gene position: 1792689-1792483 (Counterclockwise)

Preceding gene: 83592857

Following gene: 83592851

Centisome position: 41.18

GC content: 59.42

Gene sequence:

>207_bases
ATGTCCACTGGCACCGTGAAATGGTTCAACGGCACGAAGGGCTACGGTTTCATCGAGCCCGATGATGGTTCGGCCGATGT
TTTCGTGCATATCACCGCTGTTCAGCAGGCCGGTCTCGACAGCCTGCGCGAAGGCCAGAAGGTCGCTTTCGAGCTCGAGC
GTGGCCGTTCGGGCAAGATGGCCGCGTCGAACCTGAAGCCCCTTTAA

Upstream 100 bases:

>100_bases
CGCGGCTGCCTATTTGGCCGGCTTCTGGTCTGACCGTCGTCGAAAATTACAGCCCCGGGCAATCGGGCACGGGGCAACAA
CCAGACCAGGGAGCAGACGC

Downstream 100 bases:

>100_bases
GGGTAATTTACACTTCTCAAAAATGAGGGCTTGCATTGTTCCTTAGGGTTCGATAGAAAGCGCCCTCTCGCGGCGGTACG
GACCGTACCGAAGCGGCTTT

Product: cold-shock DNA-binding protein family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 68; Mature: 67

Protein sequence:

>68_residues
MSTGTVKWFNGTKGYGFIEPDDGSADVFVHITAVQQAGLDSLREGQKVAFELERGRSGKMAASNLKPL

Sequences:

>Translated_68_residues
MSTGTVKWFNGTKGYGFIEPDDGSADVFVHITAVQQAGLDSLREGQKVAFELERGRSGKMAASNLKPL
>Mature_67_residues
STGTVKWFNGTKGYGFIEPDDGSADVFVHITAVQQAGLDSLREGQKVAFELERGRSGKMAASNLKPL

Specific function: Binds To And Stimulates The Transcription Of The CCAAT- Containing, Cold-Shock-Inducible Promoters Of The H-Ns And Gyra Proteins. Binds Also To The Inverted Repeat 5'-ATTGG-3'. [C]

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1789979, Length=66, Percent_Identity=60.6060606060606, Blast_Score=82, Evalue=9e-18,
Organism=Escherichia coli, GI2367114, Length=61, Percent_Identity=59.0163934426229, Blast_Score=80, Evalue=3e-17,
Organism=Escherichia coli, GI1786841, Length=60, Percent_Identity=56.6666666666667, Blast_Score=77, Evalue=2e-16,
Organism=Escherichia coli, GI1787839, Length=61, Percent_Identity=57.3770491803279, Blast_Score=75, Evalue=7e-16,
Organism=Escherichia coli, GI1788126, Length=60, Percent_Identity=55, Blast_Score=74, Evalue=2e-15,
Organism=Escherichia coli, GI1787834, Length=60, Percent_Identity=53.3333333333333, Blast_Score=70, Evalue=3e-14,
Organism=Escherichia coli, GI1787107, Length=62, Percent_Identity=45.1612903225806, Blast_Score=66, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7316; Mature: 7185

Theoretical pI: Translated: 7.54; Mature: 7.54

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTGTVKWFNGTKGYGFIEPDDGSADVFVHITAVQQAGLDSLREGQKVAFELERGRSGKM
CCCCCEEECCCCCCCEEECCCCCCCEEEEEEEECCCCCCHHHCCCCEEEEEECCCCCCCE
AASNLKPL
ECCCCCCC
>Mature Secondary Structure 
STGTVKWFNGTKGYGFIEPDDGSADVFVHITAVQQAGLDSLREGQKVAFELERGRSGKM
CCCCEEECCCCCCCEEECCCCCCCEEEEEEEECCCCCCHHHCCCCEEEEEECCCCCCCE
AASNLKPL
ECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]