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The map label for this gene is glpD [H]

Identifier: 83592844

GI number: 83592844

Start: 1781723

End: 1783369

Strand: Direct

Name: glpD [H]

Synonym: Rru_A1508

Alternate gene names: 83592844

Gene position: 1781723-1783369 (Clockwise)

Preceding gene: 83592838

Following gene: 83592846

Centisome position: 40.93

GC content: 70.31

Gene sequence:

>1647_bases
ATGCCCCGCTGCGATCCCCGGGACGGCGACACCCCCCGGCATGACGCTTTGGCCGCCCTTCAATCGGGGGAGGTCTTCGA
TCTGCTGGTCATCGGCGGCGGCGCCACCGGCTGTGGCATCGCCCTGGATGCCGCCGGCCGGGGTCTGCGTACGGCCTTGG
TCGAGCGCTTCGATTTCGCCGAGGGCACCAGCGGCCGCAGCACCAAGCTGGTTCATGGCGGCGTGCGCTATCTTGAGGCG
GCCGTCCGCCATCTTGATTCCGCCCAGTACCATCTGGTGCGCGACGCCCTGCGCGAGCGCTGGGCCTTCCTGGCCAATGC
CCCCCATCTGTGCGATCGGCTGTCGCTGATCACCCCGCTCTATTCCTGGGCCGAGGTGCCCTATGTCTATGCCGGGCTCA
CGCTTTACGACCTGTTGTCGGGCAAGCGCTCGCTGGGTCGCAGCCGGCTGATCGGCCGGGCCGAGGCCTTGGCCCGCTGT
CCCATGCTCAAGGCCGAGGGATTGAAGGCCGCGGTGCTTTATTACGATGGCCAGTTCGTCGATACCCGCATGACCATCGC
CCTGGCGATGACGGCGCGGCGCGACGGGGCGGTTGTGGCCAATCACGTGGCGCTTGAGGCCCTGATCCACGATGACGCCG
GCACGGTGGTCGGCGCCCGGCTGCGCGATGGCCTGGACGGCGCCTCCTGGCCGATCGCCGCCAAGGTGGTGATCAATGCC
ACCGGGCCCTTCGCCGATCACCTGCGCAAGATGGATGACCCTGGAGCCAAGCCGATCCTGCGGGCGAGTTCGGGCGTTCA
TATCGTGCTTGAGGGCCGCTTCGCGCCGCCCGACGGGGGCGTGCTCATCCCCAAAACCGATGATGGCCGGGTGCTGTTCA
TCCTGCCCTGGCAGGGTCACGCCCTGGTCGGCACCACCGAGGGCGAAAGCGAGGTGGTCGACCATCCGCCGGCCAAGGCG
GTCGATGTGGCCTATCTGCTGGGCCACCTGCGGCGGTCTCTCGCCCTTGATGTCAGCGAAGGCGACGTGCTGTCGGTGTG
GGCGGGGGTGCGGCCGCTGGTCTTCGATCCCGAGGCCATCGGGACCGCCCAACTGGCCCGCGACCATGTGATCATCGAGG
ATCCATCCGGGCTGATCACCATTACCGGCGGCAAATGGACGACCTATCGCAAGATGGCCGAACAGGCGGTGGACCGGGCG
GTGGCGCGCGGCGGGCTCGCCCCGGCGCGGCCTTGCGCCACCGTGTCGCGCAAGGTGATCGGCGGTGAGGCCTTCAAGAA
GGACGGCGCGGCGGCTTTGGTCGGGCGCTTCGCCCTGGCCGGGGATATCGCCCGCCATCTCCACCGCGCCTATGGCGACC
GGGCGCCGCTCGTCGCCGAGTTGGCGGCGCGCGGGGCGGGCGCCCGTCTGCACCCCGATCATCCCCATATCGAGGCCGAG
GTCGTCTATGCCGCCACCCTGGAGGCGGCCGAGCATGGCGCCGATGTGCTGGTCCGCCGCCTGACCCTGGCCCTGGTCGA
TCGCGCCGCCGCCCGCGCCGCCGCCCCCCGGGTGATCGCCCTGCTCGGCGATCTGCGCGGCTGGGACGCGGCGCGCCGCG
CCGCCGAAACCGCCCTGCTTGACGAGCGGCTGTCGGGATCGCTGTAA

Upstream 100 bases:

>100_bases
GGAGAGCGGTGATCTCGCGGAAAGCCGCTGTTTCCTTTTCCGCTCGCCGCTTTCGCACCGTGATGGCGAAGCGAATCGTC
GTGAGGGAGTTTCCCGCCTA

Downstream 100 bases:

>100_bases
GGGGCGGCCCTGTTGTTAAAGGCTTTTCAGCCTTTTGGCATTGGCGATGGCCTTCTTGTGGATCGGCGCCAGGGCATTTT
TACCAAGCCGGCCGCCGTCC

Product: FAD dependent oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 548; Mature: 547

Protein sequence:

>548_residues
MPRCDPRDGDTPRHDALAALQSGEVFDLLVIGGGATGCGIALDAAGRGLRTALVERFDFAEGTSGRSTKLVHGGVRYLEA
AVRHLDSAQYHLVRDALRERWAFLANAPHLCDRLSLITPLYSWAEVPYVYAGLTLYDLLSGKRSLGRSRLIGRAEALARC
PMLKAEGLKAAVLYYDGQFVDTRMTIALAMTARRDGAVVANHVALEALIHDDAGTVVGARLRDGLDGASWPIAAKVVINA
TGPFADHLRKMDDPGAKPILRASSGVHIVLEGRFAPPDGGVLIPKTDDGRVLFILPWQGHALVGTTEGESEVVDHPPAKA
VDVAYLLGHLRRSLALDVSEGDVLSVWAGVRPLVFDPEAIGTAQLARDHVIIEDPSGLITITGGKWTTYRKMAEQAVDRA
VARGGLAPARPCATVSRKVIGGEAFKKDGAAALVGRFALAGDIARHLHRAYGDRAPLVAELAARGAGARLHPDHPHIEAE
VVYAATLEAAEHGADVLVRRLTLALVDRAAARAAAPRVIALLGDLRGWDAARRAAETALLDERLSGSL

Sequences:

>Translated_548_residues
MPRCDPRDGDTPRHDALAALQSGEVFDLLVIGGGATGCGIALDAAGRGLRTALVERFDFAEGTSGRSTKLVHGGVRYLEA
AVRHLDSAQYHLVRDALRERWAFLANAPHLCDRLSLITPLYSWAEVPYVYAGLTLYDLLSGKRSLGRSRLIGRAEALARC
PMLKAEGLKAAVLYYDGQFVDTRMTIALAMTARRDGAVVANHVALEALIHDDAGTVVGARLRDGLDGASWPIAAKVVINA
TGPFADHLRKMDDPGAKPILRASSGVHIVLEGRFAPPDGGVLIPKTDDGRVLFILPWQGHALVGTTEGESEVVDHPPAKA
VDVAYLLGHLRRSLALDVSEGDVLSVWAGVRPLVFDPEAIGTAQLARDHVIIEDPSGLITITGGKWTTYRKMAEQAVDRA
VARGGLAPARPCATVSRKVIGGEAFKKDGAAALVGRFALAGDIARHLHRAYGDRAPLVAELAARGAGARLHPDHPHIEAE
VVYAATLEAAEHGADVLVRRLTLALVDRAAARAAAPRVIALLGDLRGWDAARRAAETALLDERLSGSL
>Mature_547_residues
PRCDPRDGDTPRHDALAALQSGEVFDLLVIGGGATGCGIALDAAGRGLRTALVERFDFAEGTSGRSTKLVHGGVRYLEAA
VRHLDSAQYHLVRDALRERWAFLANAPHLCDRLSLITPLYSWAEVPYVYAGLTLYDLLSGKRSLGRSRLIGRAEALARCP
MLKAEGLKAAVLYYDGQFVDTRMTIALAMTARRDGAVVANHVALEALIHDDAGTVVGARLRDGLDGASWPIAAKVVINAT
GPFADHLRKMDDPGAKPILRASSGVHIVLEGRFAPPDGGVLIPKTDDGRVLFILPWQGHALVGTTEGESEVVDHPPAKAV
DVAYLLGHLRRSLALDVSEGDVLSVWAGVRPLVFDPEAIGTAQLARDHVIIEDPSGLITITGGKWTTYRKMAEQAVDRAV
ARGGLAPARPCATVSRKVIGGEAFKKDGAAALVGRFALAGDIARHLHRAYGDRAPLVAELAARGAGARLHPDHPHIEAEV
VYAATLEAAEHGADVLVRRLTLALVDRAAARAAAPRVIALLGDLRGWDAARRAAETALLDERLSGSL

Specific function: Conversion Of Glycerol 3-Phosphate To Dihydroxyacetone. Uses Molecular Oxygen Or Nitrate As Electron Acceptor. [C]

COG id: COG0578

COG function: function code C; Glycerol-3-phosphate dehydrogenase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI285002233, Length=546, Percent_Identity=44.5054945054945, Blast_Score=448, Evalue=1e-126,
Organism=Homo sapiens, GI285002231, Length=546, Percent_Identity=44.5054945054945, Blast_Score=448, Evalue=1e-126,
Organism=Escherichia coli, GI2367226, Length=500, Percent_Identity=32.6, Blast_Score=136, Evalue=3e-33,
Organism=Escherichia coli, GI1788574, Length=389, Percent_Identity=30.3341902313625, Blast_Score=100, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI17509253, Length=533, Percent_Identity=47.8424015009381, Blast_Score=461, Evalue=1e-130,
Organism=Caenorhabditis elegans, GI115534726, Length=539, Percent_Identity=38.7755102040816, Blast_Score=398, Evalue=1e-111,
Organism=Saccharomyces cerevisiae, GI6322036, Length=582, Percent_Identity=37.8006872852234, Blast_Score=372, Evalue=1e-103,
Organism=Drosophila melanogaster, GI161077125, Length=550, Percent_Identity=44.1818181818182, Blast_Score=453, Evalue=1e-127,
Organism=Drosophila melanogaster, GI24653942, Length=550, Percent_Identity=44.1818181818182, Blast_Score=453, Evalue=1e-127,
Organism=Drosophila melanogaster, GI24653944, Length=550, Percent_Identity=44.1818181818182, Blast_Score=453, Evalue=1e-127,
Organism=Drosophila melanogaster, GI20130025, Length=550, Percent_Identity=44.1818181818182, Blast_Score=453, Evalue=1e-127,
Organism=Drosophila melanogaster, GI24586295, Length=528, Percent_Identity=37.8787878787879, Blast_Score=313, Evalue=1e-85,
Organism=Drosophila melanogaster, GI19921278, Length=546, Percent_Identity=34.4322344322344, Blast_Score=271, Evalue=6e-73,
Organism=Drosophila melanogaster, GI45550977, Length=398, Percent_Identity=31.6582914572864, Blast_Score=182, Evalue=5e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006076
- InterPro:   IPR000447 [H]

Pfam domain/function: PF01266 DAO [H]

EC number: =1.1.5.3 [H]

Molecular weight: Translated: 58272; Mature: 58141

Theoretical pI: Translated: 7.54; Mature: 7.54

Prosite motif: PS00977 FAD_G3PDH_1 ; PS00978 FAD_G3PDH_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRCDPRDGDTPRHDALAALQSGEVFDLLVIGGGATGCGIALDAAGRGLRTALVERFDFA
CCCCCCCCCCCCHHHHHHHHCCCCEEEEEEECCCCCCCCEEEECCCCHHHHHHHHHHCCC
EGTSGRSTKLVHGGVRYLEAAVRHLDSAQYHLVRDALRERWAFLANAPHLCDRLSLITPL
CCCCCCCEEEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
YSWAEVPYVYAGLTLYDLLSGKRSLGRSRLIGRAEALARCPMLKAEGLKAAVLYYDGQFV
HHHHCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCEEE
DTRMTIALAMTARRDGAVVANHVALEALIHDDAGTVVGARLRDGLDGASWPIAAKVVINA
CCCEEEEEEEECCCCCCEEHHHHHEEHHEECCCCCEEEHHHHCCCCCCCCCEEEEEEEEC
TGPFADHLRKMDDPGAKPILRASSGVHIVLEGRFAPPDGGVLIPKTDDGRVLFILPWQGH
CCCHHHHHHHCCCCCCCCEEECCCCEEEEEEEEECCCCCCEEEECCCCCEEEEEEECCCC
ALVGTTEGESEVVDHPPAKAVDVAYLLGHLRRSLALDVSEGDVLSVWAGVRPLVFDPEAI
EEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHEEECCCCCEEEECCCCCCEEECCHHC
GTAQLARDHVIIEDPSGLITITGGKWTTYRKMAEQAVDRAVARGGLAPARPCATVSRKVI
CHHHHHCCEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
GGEAFKKDGAAALVGRFALAGDIARHLHRAYGDRAPLVAELAARGAGARLHPDHPHIEAE
CCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCEEE
VVYAATLEAAEHGADVLVRRLTLALVDRAAARAAAPRVIALLGDLRGWDAARRAAETALL
EEEEEEHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHH
DERLSGSL
HHHHCCCC
>Mature Secondary Structure 
PRCDPRDGDTPRHDALAALQSGEVFDLLVIGGGATGCGIALDAAGRGLRTALVERFDFA
CCCCCCCCCCCHHHHHHHHCCCCEEEEEEECCCCCCCCEEEECCCCHHHHHHHHHHCCC
EGTSGRSTKLVHGGVRYLEAAVRHLDSAQYHLVRDALRERWAFLANAPHLCDRLSLITPL
CCCCCCCEEEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
YSWAEVPYVYAGLTLYDLLSGKRSLGRSRLIGRAEALARCPMLKAEGLKAAVLYYDGQFV
HHHHCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCEEE
DTRMTIALAMTARRDGAVVANHVALEALIHDDAGTVVGARLRDGLDGASWPIAAKVVINA
CCCEEEEEEEECCCCCCEEHHHHHEEHHEECCCCCEEEHHHHCCCCCCCCCEEEEEEEEC
TGPFADHLRKMDDPGAKPILRASSGVHIVLEGRFAPPDGGVLIPKTDDGRVLFILPWQGH
CCCHHHHHHHCCCCCCCCEEECCCCEEEEEEEEECCCCCCEEEECCCCCEEEEEEECCCC
ALVGTTEGESEVVDHPPAKAVDVAYLLGHLRRSLALDVSEGDVLSVWAGVRPLVFDPEAI
EEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHEEECCCCCEEEECCCCCCEEECCHHC
GTAQLARDHVIIEDPSGLITITGGKWTTYRKMAEQAVDRAVARGGLAPARPCATVSRKVI
CHHHHHCCEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
GGEAFKKDGAAALVGRFALAGDIARHLHRAYGDRAPLVAELAARGAGARLHPDHPHIEAE
CCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCEEE
VVYAATLEAAEHGADVLVRRLTLALVDRAAARAAAPRVIALLGDLRGWDAARRAAETALL
EEEEEEHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHH
DERLSGSL
HHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA