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The map label for this gene is pchR [H]

Identifier: 83592792

GI number: 83592792

Start: 1719350

End: 1720312

Strand: Direct

Name: pchR [H]

Synonym: Rru_A1456

Alternate gene names: 83592792

Gene position: 1719350-1720312 (Clockwise)

Preceding gene: 83592787

Following gene: 83592796

Centisome position: 39.5

GC content: 67.08

Gene sequence:

>963_bases
ATGACGGACTTGCTTGGCAAGGGGCGATCGTCCCCCACCCCTCCTCTGAAGGTGGGGACGGCCGACTGGGATCACCTGCT
GCCTTCGGGTGGCGGCTGGCGGGAGACCCAGATCCCCCTGGACGAGCCGGGACGGATGCGATTTCGCATCGGCTGGCTTG
GGCCATCGATGACCGTGACGGAGAGCCAAGCCCGGCTTGGCCACGAGGTCACCGCGCGGATCGAGCAGCCGGGCGCGGTG
AGCACCTTGTGCTTCGGCCGGGCGGGCAGCAGCCTGTTCGGCTTTGGGACGGACCGGCCGCGCCATGTGGTGCGGGCTGG
CGATATCTGGCTTTTCCATGGTGACGACGCCGTGTTGACGCGGCAGACCCCGGCCCAGGATCAGGCCGTCATGGTGGCGC
TGAAGATCCCCTCGGCGCGAATGGCCGAGGTACTGGAGGGATCGGTGCGGTCCGGGCGCGGAACGCGGGCGCTGCGCTTG
GATCAAGAGGCGTTGTCGCGGTTTTCCCTGGCGCCGTTGTTGGACAATCCTTTGACCGGTCCTCTCGACCGGCTGATGGC
CGAAAGCCACGCCCTCGCCCTGCTGGCGCGCTGTCTGGCTCCCCTGGCTGGCGGGATGGCGGATGAGCCGGTGGACGATA
GCCGCCCCCTGGCCCGCGTGCTGGACCGTTTGATGGCGGATCTGGGCAATCCGCCCTCGCTTGAGGATCTCGCCCGCGAC
GCGGGGATGAGCCATGCCCGCCTCAACCGCTGTTTCCATCGGGCTTATGGCAAGACCGTTTTTGCCTGGCTGCGCGACCA
CCGTCTGGAGCGCGCGTGCCGGTATCTGCGCCAGGACGGCCATAGCATCACCGAAATAGCCTTCTTGTGTGGATTTAGCA
GTTCCAGCCACTTCGCTGCAGCCTTCCGCCAGCGGTTTGGCTGCCGGCCGGCGGATTATCGGCTGGGCAAGGAAAGGGCG
TAA

Upstream 100 bases:

>100_bases
TTCATTCATAGTCGCGTTTTCCCTCGCCGGGGGAGGGCGGTCGCCCGGCGAGCGCCGGTCCAGGCCGGTTGCGGGTTTTG
GGAAAGGACGGGACGGGGAT

Downstream 100 bases:

>100_bases
CGGCCCCGGAGCGGGCGACGGGAAAGAGGGGGGCTTTGTGGTCAAAGGCGCCTCCCCCCCTTGTCGCCTATGGCTTCCGC
CTTCCGACCTCCAGGCGCAG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 319

Protein sequence:

>320_residues
MTDLLGKGRSSPTPPLKVGTADWDHLLPSGGGWRETQIPLDEPGRMRFRIGWLGPSMTVTESQARLGHEVTARIEQPGAV
STLCFGRAGSSLFGFGTDRPRHVVRAGDIWLFHGDDAVLTRQTPAQDQAVMVALKIPSARMAEVLEGSVRSGRGTRALRL
DQEALSRFSLAPLLDNPLTGPLDRLMAESHALALLARCLAPLAGGMADEPVDDSRPLARVLDRLMADLGNPPSLEDLARD
AGMSHARLNRCFHRAYGKTVFAWLRDHRLERACRYLRQDGHSITEIAFLCGFSSSSHFAAAFRQRFGCRPADYRLGKERA

Sequences:

>Translated_320_residues
MTDLLGKGRSSPTPPLKVGTADWDHLLPSGGGWRETQIPLDEPGRMRFRIGWLGPSMTVTESQARLGHEVTARIEQPGAV
STLCFGRAGSSLFGFGTDRPRHVVRAGDIWLFHGDDAVLTRQTPAQDQAVMVALKIPSARMAEVLEGSVRSGRGTRALRL
DQEALSRFSLAPLLDNPLTGPLDRLMAESHALALLARCLAPLAGGMADEPVDDSRPLARVLDRLMADLGNPPSLEDLARD
AGMSHARLNRCFHRAYGKTVFAWLRDHRLERACRYLRQDGHSITEIAFLCGFSSSSHFAAAFRQRFGCRPADYRLGKERA
>Mature_319_residues
TDLLGKGRSSPTPPLKVGTADWDHLLPSGGGWRETQIPLDEPGRMRFRIGWLGPSMTVTESQARLGHEVTARIEQPGAVS
TLCFGRAGSSLFGFGTDRPRHVVRAGDIWLFHGDDAVLTRQTPAQDQAVMVALKIPSARMAEVLEGSVRSGRGTRALRLD
QEALSRFSLAPLLDNPLTGPLDRLMAESHALALLARCLAPLAGGMADEPVDDSRPLARVLDRLMADLGNPPSLEDLARDA
GMSHARLNRCFHRAYGKTVFAWLRDHRLERACRYLRQDGHSITEIAFLCGFSSSSHFAAAFRQRFGCRPADYRLGKERA

Specific function: Positive activator of the genes for pyochelin and ferripyochelin receptors [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 35130; Mature: 34998

Theoretical pI: Translated: 9.13; Mature: 9.13

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDLLGKGRSSPTPPLKVGTADWDHLLPSGGGWRETQIPLDEPGRMRFRIGWLGPSMTVT
CCCCCCCCCCCCCCCEEECCCCHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEE
ESQARLGHEVTARIEQPGAVSTLCFGRAGSSLFGFGTDRPRHVVRAGDIWLFHGDDAVLT
HHHHHHCHHHHHHHCCCCCHHHHHHCCCCCCEEECCCCCCCEEEEECCEEEEECCCEEEE
RQTPAQDQAVMVALKIPSARMAEVLEGSVRSGRGTRALRLDQEALSRFSLAPLLDNPLTG
CCCCCCCCEEEEEEECCCHHHHHHHHHHHCCCCCCEEEEECHHHHHHHCCCHHHCCCCCC
PLDRLMAESHALALLARCLAPLAGGMADEPVDDSRPLARVLDRLMADLGNPPSLEDLARD
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHH
AGMSHARLNRCFHRAYGKTVFAWLRDHRLERACRYLRQDGHSITEIAFLCGFSSSSHFAA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHH
AFRQRFGCRPADYRLGKERA
HHHHHHCCCCHHCCCCCCCC
>Mature Secondary Structure 
TDLLGKGRSSPTPPLKVGTADWDHLLPSGGGWRETQIPLDEPGRMRFRIGWLGPSMTVT
CCCCCCCCCCCCCCEEECCCCHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEE
ESQARLGHEVTARIEQPGAVSTLCFGRAGSSLFGFGTDRPRHVVRAGDIWLFHGDDAVLT
HHHHHHCHHHHHHHCCCCCHHHHHHCCCCCCEEECCCCCCCEEEEECCEEEEECCCEEEE
RQTPAQDQAVMVALKIPSARMAEVLEGSVRSGRGTRALRLDQEALSRFSLAPLLDNPLTG
CCCCCCCCEEEEEEECCCHHHHHHHHHHHCCCCCCEEEEECHHHHHHHCCCHHHCCCCCC
PLDRLMAESHALALLARCLAPLAGGMADEPVDDSRPLARVLDRLMADLGNPPSLEDLARD
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHH
AGMSHARLNRCFHRAYGKTVFAWLRDHRLERACRYLRQDGHSITEIAFLCGFSSSSHFAA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHH
AFRQRFGCRPADYRLGKERA
HHHHHHCCCCHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8397186; 10984043 [H]