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The map label for this gene is yigC [C]

Identifier: 83592755

GI number: 83592755

Start: 1676249

End: 1677640

Strand: Reverse

Name: yigC [C]

Synonym: Rru_A1419

Alternate gene names: 83592755

Gene position: 1677640-1676249 (Counterclockwise)

Preceding gene: 83592768

Following gene: 83592754

Centisome position: 38.54

GC content: 65.3

Gene sequence:

>1392_bases
ATGGAACGGGATTTTAGCGGGTCACCCAGGGTCATCGCCGATCTGGGACGGATCATCGACAGGCTTGAGGCCCTGGGCCG
ATTGGTCAGGGTACGGTCCGAGGTCGATCCCCGCCACGATCTGGCCGGCATCGCCGCCCGCTTCGAAGGCGGCCCGCAAG
CGGTGCTGTTCGAGAAGGTCGCCGGGCACGCCTATCCGGTCTTCGTCGGCCTCTACTGGTCGCGCGAGCTTTTGGGCGCC
TTGTTCGACCAACCCGAAACCGCCCTGCCCCAGCATGTCGCCGCCAGCATCAAATCTTGGCAAAGCGCTCCGGTCGATCC
GCTGGTGGTGGCCGACGGGCCGGTGTTGGAGGTGACCGAGGCCGAGGTCGATCTATCCACCCTGCCCATTCCCATCCACG
CCCTGGAAGACGGCGGCCCCTATTTCGATGCCGCCGTGGTCATCGCCAAGGATCCCGAAACCGGCGTGCGCAACGCCTCG
ATCCAGCGCTTCCAAGTGATCGGCAAGGATCGTCTGGTGATCAATATCGATGCCGGGCGCCATCTTGGCCTCTATCTCGA
CAAGGCGGCGGCGCGGGGCGAACCCTTGGCCTTCACCCTCAATGTCGGCGTCGGCCCCGGGGTGCATTTCGCCGCCGCCG
CCCCGGCCGAGGCCGCCCCCGTCGAAACCGACGAACTGGGCATCGCCAGCGCCTTCCACGGCGCCCCCCTGGAACTGGTG
GCCGGAACCGTCGGGCCGGTGGAAATGGTCGCCCACGCCATGTGGGCCCTGGAATGTGAGATCCGCCCCGGCGAGGTCCA
CGCCGAGGGCCCCTTCGCCGAGGTGACGGGCTATTACGCCCGGGTCGAGCCCCGGCCTTTGGTGCGGGTCAAGCGCATCC
ACCGCCGGCGCGCGCCGATCTTTCACACCCTGCTGTCGGGGGCCGAGGTCTTCAATTCGGTCGGACTGCTCGGCGAAGCC
AATGTGCTGGCCTTGTTACGGGTCCAGGTGCCCGGGGTCGAGGATGTCTACTTCAGCCATGGCGGCTGCGGGTTTTATCA
TTGCGTGGTCAAGATCGCCCAAAAGCGCGCCGGCTGGGCCAAACAGGCGATCTTGGCGACCTTCGCCGCCTTTCCGCCGC
TGAAGATGGTCACGGTGGTCGATGAGGATGTGGATATTCGCAATGGCCGCGATGTGGAATGGGCGATGACCACCCGGCTT
GATGCCAAGACCGGCATTCTGGTCATCGAAAACGCCTTCGGCCACGGCCTCAACCCGACCTTCCCCAATTATCTCGGCAC
CAAGGTCGGCTTCGATTGCACCCGGCCCTTTCCCCATACCCCGGCCTTTGATCGCGCCAAAACCAAAGCGATGACCCTTG
ACGGGCTTGATATCGTCGGGGCGAAGCGTTGA

Upstream 100 bases:

>100_bases
TTATCGCCCGTGGCCTCGGCAAAGCTCGGCCGCCCCATATTGTGGACATTGCGATAACCATGCTTCACTGCCGCTTTCCA
AACAGGGGGCGCCAGGAACT

Downstream 100 bases:

>100_bases
CGGCGCCCCCGACATAGCCCATCTCCCCAAAGGCGGACAGCGACGCGGAGAGCGTGGTCGACGGGATTAACCCGCACCAA
GTGCGCTCTCTTCGCCTGGG

Product: carboxylyase-like protein

Products: 2-octaprenylphenol; CO2 [C]

Alternate protein names: NA

Number of amino acids: Translated: 463; Mature: 463

Protein sequence:

>463_residues
MERDFSGSPRVIADLGRIIDRLEALGRLVRVRSEVDPRHDLAGIAARFEGGPQAVLFEKVAGHAYPVFVGLYWSRELLGA
LFDQPETALPQHVAASIKSWQSAPVDPLVVADGPVLEVTEAEVDLSTLPIPIHALEDGGPYFDAAVVIAKDPETGVRNAS
IQRFQVIGKDRLVINIDAGRHLGLYLDKAAARGEPLAFTLNVGVGPGVHFAAAAPAEAAPVETDELGIASAFHGAPLELV
AGTVGPVEMVAHAMWALECEIRPGEVHAEGPFAEVTGYYARVEPRPLVRVKRIHRRRAPIFHTLLSGAEVFNSVGLLGEA
NVLALLRVQVPGVEDVYFSHGGCGFYHCVVKIAQKRAGWAKQAILATFAAFPPLKMVTVVDEDVDIRNGRDVEWAMTTRL
DAKTGILVIENAFGHGLNPTFPNYLGTKVGFDCTRPFPHTPAFDRAKTKAMTLDGLDIVGAKR

Sequences:

>Translated_463_residues
MERDFSGSPRVIADLGRIIDRLEALGRLVRVRSEVDPRHDLAGIAARFEGGPQAVLFEKVAGHAYPVFVGLYWSRELLGA
LFDQPETALPQHVAASIKSWQSAPVDPLVVADGPVLEVTEAEVDLSTLPIPIHALEDGGPYFDAAVVIAKDPETGVRNAS
IQRFQVIGKDRLVINIDAGRHLGLYLDKAAARGEPLAFTLNVGVGPGVHFAAAAPAEAAPVETDELGIASAFHGAPLELV
AGTVGPVEMVAHAMWALECEIRPGEVHAEGPFAEVTGYYARVEPRPLVRVKRIHRRRAPIFHTLLSGAEVFNSVGLLGEA
NVLALLRVQVPGVEDVYFSHGGCGFYHCVVKIAQKRAGWAKQAILATFAAFPPLKMVTVVDEDVDIRNGRDVEWAMTTRL
DAKTGILVIENAFGHGLNPTFPNYLGTKVGFDCTRPFPHTPAFDRAKTKAMTLDGLDIVGAKR
>Mature_463_residues
MERDFSGSPRVIADLGRIIDRLEALGRLVRVRSEVDPRHDLAGIAARFEGGPQAVLFEKVAGHAYPVFVGLYWSRELLGA
LFDQPETALPQHVAASIKSWQSAPVDPLVVADGPVLEVTEAEVDLSTLPIPIHALEDGGPYFDAAVVIAKDPETGVRNAS
IQRFQVIGKDRLVINIDAGRHLGLYLDKAAARGEPLAFTLNVGVGPGVHFAAAAPAEAAPVETDELGIASAFHGAPLELV
AGTVGPVEMVAHAMWALECEIRPGEVHAEGPFAEVTGYYARVEPRPLVRVKRIHRRRAPIFHTLLSGAEVFNSVGLLGEA
NVLALLRVQVPGVEDVYFSHGGCGFYHCVVKIAQKRAGWAKQAILATFAAFPPLKMVTVVDEDVDIRNGRDVEWAMTTRL
DAKTGILVIENAFGHGLNPTFPNYLGTKVGFDCTRPFPHTPAFDRAKTKAMTLDGLDIVGAKR

Specific function: Unknown

COG id: COG0043

COG function: function code H; 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiD family

Homologues:

Organism=Escherichia coli, GI1790277, Length=465, Percent_Identity=29.247311827957, Blast_Score=156, Evalue=3e-39,
Organism=Saccharomyces cerevisiae, GI6320748, Length=421, Percent_Identity=23.5154394299287, Blast_Score=72, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YCOM_RHORU (P72315)

Other databases:

- EMBL:   U65510
- PIR:   T51313
- ProteinModelPortal:   P72315
- InterPro:   IPR002830
- InterPro:   IPR009002
- TIGRFAMs:   TIGR00148

Pfam domain/function: PF01977 UbiD; SSF50475 FMN_binding

EC number: NA

Molecular weight: Translated: 49902; Mature: 49902

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERDFSGSPRVIADLGRIIDRLEALGRLVRVRSEVDPRHDLAGIAARFEGGPQAVLFEKV
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCEEHHHHH
AGHAYPVFVGLYWSRELLGALFDQPETALPQHVAASIKSWQSAPVDPLVVADGPVLEVTE
CCCCEEEEEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCEEEEEE
AEVDLSTLPIPIHALEDGGPYFDAAVVIAKDPETGVRNASIQRFQVIGKDRLVINIDAGR
CCCCCEECCEEEEEECCCCCEEEEEEEEEECCCCCCCCCCCCEEEEECCCEEEEEECCCC
HLGLYLDKAAARGEPLAFTLNVGVGPGVHFAAAAPAEAAPVETDELGIASAFHGAPLELV
EEEEEEEHHHCCCCCEEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCHHHCCCCCHHHH
AGTVGPVEMVAHAMWALECEIRPGEVHAEGPFAEVTGYYARVEPRPLVRVKRIHRRRAPI
CCCCCHHHHHHHHHHEEEEEECCCCEECCCCHHHHCCEEEECCCCHHHHHHHHHHHCCHH
FHTLLSGAEVFNSVGLLGEANVLALLRVQVPGVEDVYFSHGGCGFYHCVVKIAQKRAGWA
HHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCEEEEECCCCHHHHHHHHHHHHHCCHH
KQAILATFAAFPPLKMVTVVDEDVDIRNGRDVEWAMTTRLDAKTGILVIENAFGHGLNPT
HHHHHHHHHCCCCEEEEEEECCCCCCCCCCCEEEEEEEEECCCCCEEEEECCCCCCCCCC
FPNYLGTKVGFDCTRPFPHTPAFDRAKTKAMTLDGLDIVGAKR
CCCCCCCCCCCCCCCCCCCCCCCCCHHCCEEEECCCEECCCCC
>Mature Secondary Structure
MERDFSGSPRVIADLGRIIDRLEALGRLVRVRSEVDPRHDLAGIAARFEGGPQAVLFEKV
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCEEHHHHH
AGHAYPVFVGLYWSRELLGALFDQPETALPQHVAASIKSWQSAPVDPLVVADGPVLEVTE
CCCCEEEEEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCEEEEEE
AEVDLSTLPIPIHALEDGGPYFDAAVVIAKDPETGVRNASIQRFQVIGKDRLVINIDAGR
CCCCCEECCEEEEEECCCCCEEEEEEEEEECCCCCCCCCCCCEEEEECCCEEEEEECCCC
HLGLYLDKAAARGEPLAFTLNVGVGPGVHFAAAAPAEAAPVETDELGIASAFHGAPLELV
EEEEEEEHHHCCCCCEEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCHHHCCCCCHHHH
AGTVGPVEMVAHAMWALECEIRPGEVHAEGPFAEVTGYYARVEPRPLVRVKRIHRRRAPI
CCCCCHHHHHHHHHHEEEEEECCCCEECCCCHHHHCCEEEECCCCHHHHHHHHHHHCCHH
FHTLLSGAEVFNSVGLLGEANVLALLRVQVPGVEDVYFSHGGCGFYHCVVKIAQKRAGWA
HHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCEEEEECCCCHHHHHHHHHHHHHCCHH
KQAILATFAAFPPLKMVTVVDEDVDIRNGRDVEWAMTTRLDAKTGILVIENAFGHGLNPT
HHHHHHHHHCCCCEEEEEEECCCCCCCCCCCEEEEEEEEECCCCCEEEEECCCCCCCCCC
FPNYLGTKVGFDCTRPFPHTPAFDRAKTKAMTLDGLDIVGAKR
CCCCCCCCCCCCCCCCCCCCCCCCCHHCCEEEECCCEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: 3-octaprenyl-4-hydroxybenzoate [C]

Specific reaction: 3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2 [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8892819