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The map label for this gene is yagI [H]

Identifier: 83592680

GI number: 83592680

Start: 1583898

End: 1584686

Strand: Direct

Name: yagI [H]

Synonym: Rru_A1344

Alternate gene names: 83592680

Gene position: 1583898-1584686 (Clockwise)

Preceding gene: 83592677

Following gene: 83592681

Centisome position: 36.39

GC content: 65.27

Gene sequence:

>789_bases
ATGGACCAATCCGAGAAGCCCGACAGGGCGGCCGACAGGCTTTTCGTGTCGTCTTTGGACAAGGCGATGCGCCTGCTGGG
CGCCTTCAGCGCCGAGAGGCCGGAGATGGGCCTGGGGGATCTGGCCCTGGCCGCCGGCCTGGATAAAAGCGCCGCCCAGC
GCTTCGCCCACACCTTTCATAGCCTGGGTTATCTGGATAAGGACCCGGTGACGCGGCGCTATCGGCCCTCGATCAAGATC
CTTGATCTGACCAACGCCTATCTGTGGGCCAATCCGCTGATCCGTGCCGCGATGCCGCAGCTGATCGATTTGCGGCAGAA
AATCGGCGAGACGGTCAATCTGGCGCTGCTGGATGGCGAAAGCATCGTTTATGCCATCCGCCTGCCCAATGCCCGCACCA
GCTTCGCCGCCACCTTGATCGGCCGGCGCGCCCCGGCCCTGAACACCGCCAGCGGTCGGGTGATGATCGCCGGCTTCGAT
CGCCAAACCCGGCAAGCCTGCGTCGAGACTTGGCCGCTGACCGCCCATATCCCGACGACCCTGCTCGATCGCCCGACGAT
CCTTGGGTTGGTCGAAGAGGCGGCCGAGAAGGGCTATGCGATCAGCGAGAACGAAATTCTTCTGAATGAACGTGACATCG
CCGCGCCGATCCGCATCATGGGTGGCCCGCGCGCGGCGGTCCAATGCTCGGTCTCGGCGATGGTCTGGCCGCGCGCGCGC
ATCGTCGCCGATATCGCCCCGGCCTTGCTCGATACGGCGAACGCGCTGTCGCAGACCCCGCTGGGCTAG

Upstream 100 bases:

>100_bases
ATGCAATACTCGGTGGCGCATTATATCCACGATAGGACTCTGCCTCTCTTTCGGTCAAGGGCGAAGAGTGCCCATTGTTT
CATCGTGTTTGGGAGGGCGC

Downstream 100 bases:

>100_bases
GGCGGCCGGCGAAAACCCGCTGCCGGTTTTCCGGGCGCCGCGCCCTTCGCCCGCTCCCCGGCATCGCCAACCGCGACCCA
AGCTGGCGATCGGCGATCCG

Product: IclR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MDQSEKPDRAADRLFVSSLDKAMRLLGAFSAERPEMGLGDLALAAGLDKSAAQRFAHTFHSLGYLDKDPVTRRYRPSIKI
LDLTNAYLWANPLIRAAMPQLIDLRQKIGETVNLALLDGESIVYAIRLPNARTSFAATLIGRRAPALNTASGRVMIAGFD
RQTRQACVETWPLTAHIPTTLLDRPTILGLVEEAAEKGYAISENEILLNERDIAAPIRIMGGPRAAVQCSVSAMVWPRAR
IVADIAPALLDTANALSQTPLG

Sequences:

>Translated_262_residues
MDQSEKPDRAADRLFVSSLDKAMRLLGAFSAERPEMGLGDLALAAGLDKSAAQRFAHTFHSLGYLDKDPVTRRYRPSIKI
LDLTNAYLWANPLIRAAMPQLIDLRQKIGETVNLALLDGESIVYAIRLPNARTSFAATLIGRRAPALNTASGRVMIAGFD
RQTRQACVETWPLTAHIPTTLLDRPTILGLVEEAAEKGYAISENEILLNERDIAAPIRIMGGPRAAVQCSVSAMVWPRAR
IVADIAPALLDTANALSQTPLG
>Mature_262_residues
MDQSEKPDRAADRLFVSSLDKAMRLLGAFSAERPEMGLGDLALAAGLDKSAAQRFAHTFHSLGYLDKDPVTRRYRPSIKI
LDLTNAYLWANPLIRAAMPQLIDLRQKIGETVNLALLDGESIVYAIRLPNARTSFAATLIGRRAPALNTASGRVMIAGFD
RQTRQACVETWPLTAHIPTTLLDRPTILGLVEEAAEKGYAISENEILLNERDIAAPIRIMGGPRAAVQCSVSAMVWPRAR
IVADIAPALLDTANALSQTPLG

Specific function: Unknown

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI1786468, Length=203, Percent_Identity=27.5862068965517, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1788131, Length=216, Percent_Identity=29.6296296296296, Blast_Score=90, Evalue=2e-19,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 28480; Mature: 28480

Theoretical pI: Translated: 8.69; Mature: 8.69

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDQSEKPDRAADRLFVSSLDKAMRLLGAFSAERPEMGLGDLALAAGLDKSAAQRFAHTFH
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHH
SLGYLDKDPVTRRYRPSIKILDLTNAYLWANPLIRAAMPQLIDLRQKIGETVNLALLDGE
HCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCC
SIVYAIRLPNARTSFAATLIGRRAPALNTASGRVMIAGFDRQTRQACVETWPLTAHIPTT
EEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCEEEEEECCHHHHHHHHHHCCCEECCCHH
LLDRPTILGLVEEAAEKGYAISENEILLNERDIAAPIRIMGGPRAAVQCSVSAMVWPRAR
HHCCCHHHHHHHHHHHCCCEECCCCEEECCCCCCCCEEEECCCCCEEEEEEHHEECCHHH
IVADIAPALLDTANALSQTPLG
HHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MDQSEKPDRAADRLFVSSLDKAMRLLGAFSAERPEMGLGDLALAAGLDKSAAQRFAHTFH
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHH
SLGYLDKDPVTRRYRPSIKILDLTNAYLWANPLIRAAMPQLIDLRQKIGETVNLALLDGE
HCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCC
SIVYAIRLPNARTSFAATLIGRRAPALNTASGRVMIAGFDRQTRQACVETWPLTAHIPTT
EEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCEEEEEECCHHHHHHHHHHCCCEECCCHH
LLDRPTILGLVEEAAEKGYAISENEILLNERDIAAPIRIMGGPRAAVQCSVSAMVWPRAR
HHCCCHHHHHHHHHHHCCCEECCCCEEECCCCCCCCEEEECCCCCEEEEEEHHEECCHHH
IVADIAPALLDTANALSQTPLG
HHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]