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The map label for this gene is sorC [H]

Identifier: 83592675

GI number: 83592675

Start: 1576275

End: 1577366

Strand: Reverse

Name: sorC [H]

Synonym: Rru_A1339

Alternate gene names: 83592675

Gene position: 1577366-1576275 (Counterclockwise)

Preceding gene: 83592679

Following gene: 83592670

Centisome position: 36.24

GC content: 67.67

Gene sequence:

>1092_bases
ATGGCCCTTGATCCGCCCGCCGCTCAAGGGGCCACCACGCCCAAGCCGACCACCCCGCGCAAGCGGTGGCCGGGCCCCAG
CCAAGAGGCAGTGACAGAGATGACCACAGACTCGCGGGACGCCGAGCGCCACCTGCTGACGGAAATCGCCGCCCTTTATT
TCCTGGAACAAGTGACCCAAGAGGAACTGGCCAAACGCTTCGCCATGTCGCGGGCCAAGATCGGCCGCCTGCTCAAGCGG
GCGCGCGAGGAGGGCATCGTTGAAATCACCGTGCGGCCCCACCCCTCGGCCGTTTCGGAGATGGAAGAGGAATTCCGCCA
GCGTTTCGGCCTCAGCCGGCTGCTCATCTCCACCGATCACCGCGATCCCGACACCCAGCGCTCGGCGGTGGCCAGCCTGG
TGGCCGCCTATCTCAACCGCGTGCTCGACGACGGCATGATCGTCGCCGTGGGCATGGGGCGCAATGTCGGCGCCGTGGCC
GATAACATCACCTCTCCGGCGCCGCGCGCCGTCACCTTCGTTTCGGCGATCGGCGGCTCGATGCGGGCGGGCGGCTATAT
GAACCCCGACCACATCTGCCGCCGGCTGGCCGCCCGCTTCGGCGGCGAAAGCGAAACGCTGTACGCCCCGGCCCTGGTCG
CCAATCCCGAACTGAAGGCGGCGCTGATCGGACAAGATACGGTCAAGCACACCCTGGACCGGGCGCGCCGCGCCGATCTG
GCGCTGATCGGCGTTGGCGATGTCAGCGAAGACAGCAACATGGTGCGCATGGGGTGGTTCTCGCCCAGCGAGGTGGCCGA
GGCCCGGCTGTCGGGCACCATCGGCGACATGATGGGCTATGACTTCATCGATATCGAAGGCCGCCCCTCCAACACCGCCA
TGCAGGGCCGCATCATCGGGCTGACCATGGCCGAACTGTGCCGCATCCCCGATGTCATCGCCATCGCCAGCGAAACGACC
AAGGCGGCGGGCATCCTGGGGGCGCTGCGCACCGGCACGATCAACACCCTGGCGACCAGCACCTCGAACGCCCATACCGT
GCGCAGCCTTGACGACGCCACCCGCGGCCATCGCTCCCGGCCCTTGGACTAA

Upstream 100 bases:

>100_bases
GCCCGGGCCCTCCAACCAAACACCTGCGGTTGACCGCCGCCCGATCGTCGCGTCTCCCCTGGACGGAACGCCCTTTCCCT
GGCAAAGGAGGGGACATGCC

Downstream 100 bases:

>100_bases
GGCCGCCATCGCCGGCCTCAGCGCGAAACGCGCAGGGCGAAAAGCGTTCCGGCCAGCACGATGAAAATGCCGACGATCAC
CTTCTGCCACGTGCTCGGCA

Product: DeoR family transcriptional regulator

Products: NA

Alternate protein names: Sor operon activator [H]

Number of amino acids: Translated: 363; Mature: 362

Protein sequence:

>363_residues
MALDPPAAQGATTPKPTTPRKRWPGPSQEAVTEMTTDSRDAERHLLTEIAALYFLEQVTQEELAKRFAMSRAKIGRLLKR
AREEGIVEITVRPHPSAVSEMEEEFRQRFGLSRLLISTDHRDPDTQRSAVASLVAAYLNRVLDDGMIVAVGMGRNVGAVA
DNITSPAPRAVTFVSAIGGSMRAGGYMNPDHICRRLAARFGGESETLYAPALVANPELKAALIGQDTVKHTLDRARRADL
ALIGVGDVSEDSNMVRMGWFSPSEVAEARLSGTIGDMMGYDFIDIEGRPSNTAMQGRIIGLTMAELCRIPDVIAIASETT
KAAGILGALRTGTINTLATSTSNAHTVRSLDDATRGHRSRPLD

Sequences:

>Translated_363_residues
MALDPPAAQGATTPKPTTPRKRWPGPSQEAVTEMTTDSRDAERHLLTEIAALYFLEQVTQEELAKRFAMSRAKIGRLLKR
AREEGIVEITVRPHPSAVSEMEEEFRQRFGLSRLLISTDHRDPDTQRSAVASLVAAYLNRVLDDGMIVAVGMGRNVGAVA
DNITSPAPRAVTFVSAIGGSMRAGGYMNPDHICRRLAARFGGESETLYAPALVANPELKAALIGQDTVKHTLDRARRADL
ALIGVGDVSEDSNMVRMGWFSPSEVAEARLSGTIGDMMGYDFIDIEGRPSNTAMQGRIIGLTMAELCRIPDVIAIASETT
KAAGILGALRTGTINTLATSTSNAHTVRSLDDATRGHRSRPLD
>Mature_362_residues
ALDPPAAQGATTPKPTTPRKRWPGPSQEAVTEMTTDSRDAERHLLTEIAALYFLEQVTQEELAKRFAMSRAKIGRLLKRA
REEGIVEITVRPHPSAVSEMEEEFRQRFGLSRLLISTDHRDPDTQRSAVASLVAAYLNRVLDDGMIVAVGMGRNVGAVAD
NITSPAPRAVTFVSAIGGSMRAGGYMNPDHICRRLAARFGGESETLYAPALVANPELKAALIGQDTVKHTLDRARRADLA
LIGVGDVSEDSNMVRMGWFSPSEVAEARLSGTIGDMMGYDFIDIEGRPSNTAMQGRIIGLTMAELCRIPDVIAIASETTK
AAGILGALRTGTINTLATSTSNAHTVRSLDDATRGHRSRPLD

Specific function: Positively regulates, in the presence of L-sorbose, and negatively regulates, in the absence of L-sorbose, the transcription of the sor operon [H]

COG id: COG2390

COG function: function code K; Transcriptional regulator, contains sigma factor-related N-terminal domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sorC transcriptional regulatory family [H]

Homologues:

Organism=Escherichia coli, GI1787791, Length=315, Percent_Identity=26.6666666666667, Blast_Score=111, Evalue=6e-26,
Organism=Escherichia coli, GI87082414, Length=299, Percent_Identity=25.752508361204, Blast_Score=106, Evalue=2e-24,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR007630
- InterPro:   IPR007324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04545 Sigma70_r4; PF04198 Sugar-bind [H]

EC number: NA

Molecular weight: Translated: 39176; Mature: 39045

Theoretical pI: Translated: 6.89; Mature: 6.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALDPPAAQGATTPKPTTPRKRWPGPSQEAVTEMTTDSRDAERHLLTEIAALYFLEQVTQ
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
EELAKRFAMSRAKIGRLLKRAREEGIVEITVRPHPSAVSEMEEEFRQRFGLSRLLISTDH
HHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHCHHHEEEECCC
RDPDTQRSAVASLVAAYLNRVLDDGMIVAVGMGRNVGAVADNITSPAPRAVTFVSAIGGS
CCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHCCCCCCCHHHHHHHHHCCC
MRAGGYMNPDHICRRLAARFGGESETLYAPALVANPELKAALIGQDTVKHTLDRARRADL
CCCCCCCCHHHHHHHHHHHHCCCCCEEECCEEEECCCCCEEECCHHHHHHHHHHHHHCCE
ALIGVGDVSEDSNMVRMGWFSPSEVAEARLSGTIGDMMGYDFIDIEGRPSNTAMQGRIIG
EEEECCCCCCCCCEEEEECCCHHHHHHHHHHCCHHHHHCCCEEEECCCCCCCCCCCEEEH
LTMAELCRIPDVIAIASETTKAAGILGALRTGTINTLATSTSNAHTVRSLDDATRGHRSR
EEHHHHHCCCCEEEECCCHHHHHHHHHHHHCCCCHHHCCCCCCCHHHHHHHHHHCCCCCC
PLD
CCC
>Mature Secondary Structure 
ALDPPAAQGATTPKPTTPRKRWPGPSQEAVTEMTTDSRDAERHLLTEIAALYFLEQVTQ
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
EELAKRFAMSRAKIGRLLKRAREEGIVEITVRPHPSAVSEMEEEFRQRFGLSRLLISTDH
HHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHCHHHEEEECCC
RDPDTQRSAVASLVAAYLNRVLDDGMIVAVGMGRNVGAVADNITSPAPRAVTFVSAIGGS
CCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHCCCCCCCHHHHHHHHHCCC
MRAGGYMNPDHICRRLAARFGGESETLYAPALVANPELKAALIGQDTVKHTLDRARRADL
CCCCCCCCHHHHHHHHHHHHCCCCCEEECCEEEECCCCCEEECCHHHHHHHHHHHHHCCE
ALIGVGDVSEDSNMVRMGWFSPSEVAEARLSGTIGDMMGYDFIDIEGRPSNTAMQGRIIG
EEEECCCCCCCCCEEEEECCCHHHHHHHHHHCCHHHHHCCCEEEECCCCCCCCCCCEEEH
LTMAELCRIPDVIAIASETTKAAGILGALRTGTINTLATSTSNAHTVRSLDDATRGHRSR
EEHHHHHCCCCEEEECCCHHHHHHHHHHHHCCCCHHHCCCCCCCHHHHHHHHHHCCCCCC
PLD
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7947968 [H]