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The map label for this gene is rbsC [H]

Identifier: 83592674

GI number: 83592674

Start: 1575226

End: 1576257

Strand: Direct

Name: rbsC [H]

Synonym: Rru_A1338

Alternate gene names: 83592674

Gene position: 1575226-1576257 (Clockwise)

Preceding gene: 83592673

Following gene: 83592676

Centisome position: 36.19

GC content: 65.12

Gene sequence:

>1032_bases
ATGACCGATCTCGCGCTCGATCTGCCCGGCGCCGCGAAACGCCCTTCGACGGCGCGGGCCTTGTTGCGCTGGCTGATCGG
CCATCCGCCGGTGATCACCCTTGGTCTGATCGTGCTGGTCAGCCTCGTCGTCGGCGCCATCAGCCCCGAGTTCTGGCAGG
TCTCCAACCTGTTTGACATGGCCCGCGCCTCGGTGGTCAGCGGCCTCTTCGGCCTTGGCGTTCTGATCGTGCTGGCGACC
GGCGGCCTTGATGTCTCGTTCACCGCCATCGCCGCCCTGACAATGTATGTGATCACCAAAACGGTCACCGATTACGCGCC
GGGAACGCCGATCGCGGTGATCCTCGCCTGCGGCGCGGCGGGCGGGGCGCTGATCGGCGCGCTGAACGGCCAGTTGGTCC
ATTCGCTGAAGGCGCCGTCGCTGATCGTCACCATCGGCACCCAATACGTGATCCGCGGTTTCCTGCTGACCTTCATCGGC
ACCGGATTGTTCATGAATATCCCGCTGTCGATGGAAGCCTTCGGCAAATACGAGCTGTGGCGCTCGGAGGCGGGCAACGG
CTCGATCGCCATCCTGCCGGCTTATGTGCTGGTGCTGGTGGTGGTCTCGGTGGTGACGTGGTGGATCCTCAACCGCACGC
TGATCGGCCGGGCGGTCTATGCGGTCGGCGGCAGTCCGGCGATCGCCGAGAGGCTGGGCTACAACCTGCGCAAGGTGCGG
GTTTTCGCCTTCATGTACGCCGGGCTGCTCGCCGGCATCGCCGGGATCATCCATGTTTCCAGCAACCGTCTGGCCAATCC
CTTCGATCTCGCCGGCTCGGAATTGGATGTGATCGCCGCCGTGGTGCTGGGCGGGGCGCGCATCACCGGCGGATCGGGAA
GCGTGGTCGGCACCCTGCTTGGCGTCGTGCTGGTCACCTTGATCAACAACGTGCTGATCCTGGCCGGCGTGCCGAGCACG
TGGCAGAAGGTGATCGTCGGCATTTTCATCGTGCTGGCCGGAACGCTTTTCGCCCTGCGCGTTTCGCGCTGA

Upstream 100 bases:

>100_bases
TGCGCAAAGGGCGCGTGGCCGAGGTCTTCGATGCCGAAGGTCTGGGCGAAGGCGCGCTGTACCGCGCCCTGGTCGCCGAA
GAATCCCCAAGGAGCCTGCC

Downstream 100 bases:

>100_bases
GGCCGGCGATGGCGGCCTTAGTCCAAGGGCCGGGAGCGATGGCCGCGGGTGGCGTCGTCAAGGCTGCGCACGGTATGGGC
GTTCGAGGTGCTGGTCGCCA

Product: inner-membrane translocator

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 343; Mature: 342

Protein sequence:

>343_residues
MTDLALDLPGAAKRPSTARALLRWLIGHPPVITLGLIVLVSLVVGAISPEFWQVSNLFDMARASVVSGLFGLGVLIVLAT
GGLDVSFTAIAALTMYVITKTVTDYAPGTPIAVILACGAAGGALIGALNGQLVHSLKAPSLIVTIGTQYVIRGFLLTFIG
TGLFMNIPLSMEAFGKYELWRSEAGNGSIAILPAYVLVLVVVSVVTWWILNRTLIGRAVYAVGGSPAIAERLGYNLRKVR
VFAFMYAGLLAGIAGIIHVSSNRLANPFDLAGSELDVIAAVVLGGARITGGSGSVVGTLLGVVLVTLINNVLILAGVPST
WQKVIVGIFIVLAGTLFALRVSR

Sequences:

>Translated_343_residues
MTDLALDLPGAAKRPSTARALLRWLIGHPPVITLGLIVLVSLVVGAISPEFWQVSNLFDMARASVVSGLFGLGVLIVLAT
GGLDVSFTAIAALTMYVITKTVTDYAPGTPIAVILACGAAGGALIGALNGQLVHSLKAPSLIVTIGTQYVIRGFLLTFIG
TGLFMNIPLSMEAFGKYELWRSEAGNGSIAILPAYVLVLVVVSVVTWWILNRTLIGRAVYAVGGSPAIAERLGYNLRKVR
VFAFMYAGLLAGIAGIIHVSSNRLANPFDLAGSELDVIAAVVLGGARITGGSGSVVGTLLGVVLVTLINNVLILAGVPST
WQKVIVGIFIVLAGTLFALRVSR
>Mature_342_residues
TDLALDLPGAAKRPSTARALLRWLIGHPPVITLGLIVLVSLVVGAISPEFWQVSNLFDMARASVVSGLFGLGVLIVLATG
GLDVSFTAIAALTMYVITKTVTDYAPGTPIAVILACGAAGGALIGALNGQLVHSLKAPSLIVTIGTQYVIRGFLLTFIGT
GLFMNIPLSMEAFGKYELWRSEAGNGSIAILPAYVLVLVVVSVVTWWILNRTLIGRAVYAVGGSPAIAERLGYNLRKVRV
FAFMYAGLLAGIAGIIHVSSNRLANPFDLAGSELDVIAAVVLGGARITGGSGSVVGTLLGVVLVTLINNVLILAGVPSTW
QKVIVGIFIVLAGTLFALRVSR

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=315, Percent_Identity=33.015873015873, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1788896, Length=319, Percent_Identity=32.6018808777429, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI87082395, Length=314, Percent_Identity=29.2993630573248, Blast_Score=104, Evalue=9e-24,
Organism=Escherichia coli, GI1787794, Length=300, Percent_Identity=28.6666666666667, Blast_Score=88, Evalue=8e-19,
Organism=Escherichia coli, GI1790524, Length=303, Percent_Identity=27.0627062706271, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI145693152, Length=290, Percent_Identity=31.0344827586207, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1789992, Length=333, Percent_Identity=26.1261261261261, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1787793, Length=287, Percent_Identity=28.2229965156794, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI145693214, Length=326, Percent_Identity=29.7546012269939, Blast_Score=75, Evalue=8e-15,
Organism=Escherichia coli, GI1788471, Length=328, Percent_Identity=29.8780487804878, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 35657; Mature: 35526

Theoretical pI: Translated: 10.24; Mature: 10.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDLALDLPGAAKRPSTARALLRWLIGHPPVITLGLIVLVSLVVGAISPEFWQVSNLFDM
CCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
ARASVVSGLFGLGVLIVLATGGLDVSFTAIAALTMYVITKTVTDYAPGTPIAVILACGAA
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHEECCCC
GGALIGALNGQLVHSLKAPSLIVTIGTQYVIRGFLLTFIGTGLFMNIPLSMEAFGKYELW
CCHHHHHHCHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCEEECCCCHHHHCCHHHH
RSEAGNGSIAILPAYVLVLVVVSVVTWWILNRTLIGRAVYAVGGSPAIAERLGYNLRKVR
HCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHH
VFAFMYAGLLAGIAGIIHVSSNRLANPFDLAGSELDVIAAVVLGGARITGGSGSVVGTLL
HHHHHHHHHHHHHHHHHEECCCCCCCCHHCCCCHHHHHHHHHHCCCEEECCCCHHHHHHH
GVVLVTLINNVLILAGVPSTWQKVIVGIFIVLAGTLFALRVSR
HHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TDLALDLPGAAKRPSTARALLRWLIGHPPVITLGLIVLVSLVVGAISPEFWQVSNLFDM
CCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
ARASVVSGLFGLGVLIVLATGGLDVSFTAIAALTMYVITKTVTDYAPGTPIAVILACGAA
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHEECCCC
GGALIGALNGQLVHSLKAPSLIVTIGTQYVIRGFLLTFIGTGLFMNIPLSMEAFGKYELW
CCHHHHHHCHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCEEECCCCHHHHCCHHHH
RSEAGNGSIAILPAYVLVLVVVSVVTWWILNRTLIGRAVYAVGGSPAIAERLGYNLRKVR
HCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHH
VFAFMYAGLLAGIAGIIHVSSNRLANPFDLAGSELDVIAAVVLGGARITGGSGSVVGTLL
HHHHHHHHHHHHHHHHHEECCCCCCCCHHCCCCHHHHHHHHHHCCCEEECCCCHHHHHHH
GVVLVTLINNVLILAGVPSTWQKVIVGIFIVLAGTLFALRVSR
HHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]