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The map label for this gene is gcdB [H]

Identifier: 83592656

GI number: 83592656

Start: 1558503

End: 1559714

Strand: Direct

Name: gcdB [H]

Synonym: Rru_A1320

Alternate gene names: 83592656

Gene position: 1558503-1559714 (Clockwise)

Preceding gene: 83592655

Following gene: 83592657

Centisome position: 35.8

GC content: 62.05

Gene sequence:

>1212_bases
ATGTTCGACCAGATTCTTACGGTTTTTCCGGGCATCGGGACGCTTTTCGTCCAGGAGCCCGTCATCGCCATCTCCCGCCT
CGGGTTGATGGGCCTTGGCTTCTTCCTCGCCTATCTGGGTTTTAAGCGGACTCTCGAGCCGTTGATCATGGTGCCGATGG
GTCTGGGCATGATGGCGGTGAATGCCGGCGTGATGTTTCTTGAAGCCGGGCAGATCGGCACCCTGATCATTGCGCCGATG
GTGTCCGACACCGAAGGCCTGATCAATATCCTGCAGATCGACTTCCTCCAGCCGGTCTACAACTTCACCTTCACCAACTC
GCTGGTCGCCTGCCTGCTGTTCATGGGCATCGGCACGATGGCCGACATCTCGTTCATCCTGGCGCGCCCCTGGGCCAGCA
TGACGGTGGCGCTGTTCGCCGAGCTTGGCACCTTCGCCACGCTGGTGATCGGTTATTACTGTGGTCTGACCCCCGGTCAG
GCGGCGGCCGTTGGGTCGATCGGCGGCGCCGATGGTCCGATGGTGCTGTTCGCCTCGCTGGTGATGGCCAAGGACCTCTT
CGTTCCGATCTCGATCATCGCCTATTTGTACCTGTCGCTGTGCTACGCCGGTTACCCCTACCTGGTGAAGTGGCTGATCC
CCGAGAAATACCGTGGCCTGGAAGTCGAATTCGAGTTCCCCGACGTCAGCCAGGAAGCCAAGTTCGTCTTCACCATCGTC
GCCGCCGGCCTGCTGTGCTTCCTGCTGCCCGTCGCCGCTCCGCTGATCTTGTCGTTCTTCCTGGGCGTCGCCATCAAGGA
AGCCGAGATCGAGCCCTACCAGCAGCTGCTTGAGAAGACCATCACCTACGGAGCCACCCTGTTCCTCGGCCTCGTGCTCG
GCGTGCTGTGCGAAGCCTCCACCCTGCTTGATCCCCGCGTCGCCATCCTCCTCGTCCTCGGCATCACGGCCCTTGCCATC
TCCGGCCTGGGTGGCATCGCCGGCGGCTGGTTCATGTGGTGGTGGAGCAAGGGCAAGTTCAATCCCGTCATTGGCATCGC
CGGCGTCTCTTGCATGCCCTCGACCGCCAAGATCGCTCAGCAGATCGCCTTCGAAGCCAGCCCCTACGCCATGATCATGC
CTTTGGCCATGGGTGCCCAGATCTGCGGCGTCATCGTCTCCGCCATTGCCGTCGGCGTCTTCGCCTCGACGATCGGCCTG
GTCGGCGGTTGA

Upstream 100 bases:

>100_bases
ATTACCGCCGTCATCGCTTACGCGGTGATGGGGGTGATCGTTAGCCTATCCCGCTTCCTGTCCCAGCGTTCGAACGCCCA
GTAACGCGAGAGAGCAAGAA

Downstream 100 bases:

>100_bases
CGACTAGCGTCCGGTGTCTCTCTCCCCCCGGGCACCGGACGCTCCCCCTTTCGACACTCTGATTACCCTGGTTCCCGTCT
CCTGCCGATAGGACCACTCC

Product: Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, subunit beta

Products: NA

Alternate protein names: Carboxylyase [H]

Number of amino acids: Translated: 403; Mature: 403

Protein sequence:

>403_residues
MFDQILTVFPGIGTLFVQEPVIAISRLGLMGLGFFLAYLGFKRTLEPLIMVPMGLGMMAVNAGVMFLEAGQIGTLIIAPM
VSDTEGLINILQIDFLQPVYNFTFTNSLVACLLFMGIGTMADISFILARPWASMTVALFAELGTFATLVIGYYCGLTPGQ
AAAVGSIGGADGPMVLFASLVMAKDLFVPISIIAYLYLSLCYAGYPYLVKWLIPEKYRGLEVEFEFPDVSQEAKFVFTIV
AAGLLCFLLPVAAPLILSFFLGVAIKEAEIEPYQQLLEKTITYGATLFLGLVLGVLCEASTLLDPRVAILLVLGITALAI
SGLGGIAGGWFMWWWSKGKFNPVIGIAGVSCMPSTAKIAQQIAFEASPYAMIMPLAMGAQICGVIVSAIAVGVFASTIGL
VGG

Sequences:

>Translated_403_residues
MFDQILTVFPGIGTLFVQEPVIAISRLGLMGLGFFLAYLGFKRTLEPLIMVPMGLGMMAVNAGVMFLEAGQIGTLIIAPM
VSDTEGLINILQIDFLQPVYNFTFTNSLVACLLFMGIGTMADISFILARPWASMTVALFAELGTFATLVIGYYCGLTPGQ
AAAVGSIGGADGPMVLFASLVMAKDLFVPISIIAYLYLSLCYAGYPYLVKWLIPEKYRGLEVEFEFPDVSQEAKFVFTIV
AAGLLCFLLPVAAPLILSFFLGVAIKEAEIEPYQQLLEKTITYGATLFLGLVLGVLCEASTLLDPRVAILLVLGITALAI
SGLGGIAGGWFMWWWSKGKFNPVIGIAGVSCMPSTAKIAQQIAFEASPYAMIMPLAMGAQICGVIVSAIAVGVFASTIGL
VGG
>Mature_403_residues
MFDQILTVFPGIGTLFVQEPVIAISRLGLMGLGFFLAYLGFKRTLEPLIMVPMGLGMMAVNAGVMFLEAGQIGTLIIAPM
VSDTEGLINILQIDFLQPVYNFTFTNSLVACLLFMGIGTMADISFILARPWASMTVALFAELGTFATLVIGYYCGLTPGQ
AAAVGSIGGADGPMVLFASLVMAKDLFVPISIIAYLYLSLCYAGYPYLVKWLIPEKYRGLEVEFEFPDVSQEAKFVFTIV
AAGLLCFLLPVAAPLILSFFLGVAIKEAEIEPYQQLLEKTITYGATLFLGLVLGVLCEASTLLDPRVAILLVLGITALAI
SGLGGIAGGWFMWWWSKGKFNPVIGIAGVSCMPSTAKIAQQIAFEASPYAMIMPLAMGAQICGVIVSAIAVGVFASTIGL
VGG

Specific function: Tunnel subunit of the primary sodium pump glutaconyl-CoA decarboxylase (GCD) [H]

COG id: COG1883

COG function: function code C; Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gcdB/mmdB/oadB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005661 [H]

Pfam domain/function: PF03977 OAD_beta [H]

EC number: =4.1.1.70 [H]

Molecular weight: Translated: 42839; Mature: 42839

Theoretical pI: Translated: 4.27; Mature: 4.27

Prosite motif: PS00358 RIBOSOMAL_L5

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDQILTVFPGIGTLFVQEPVIAISRLGLMGLGFFLAYLGFKRTLEPLIMVPMGLGMMAV
CCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
NAGVMFLEAGQIGTLIIAPMVSDTEGLINILQIDFLQPVYNFTFTNSLVACLLFMGIGTM
CCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
ADISFILARPWASMTVALFAELGTFATLVIGYYCGLTPGQAAAVGSIGGADGPMVLFASL
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCHHHHHHHH
VMAKDLFVPISIIAYLYLSLCYAGYPYLVKWLIPEKYRGLEVEFEFPDVSQEAKFVFTIV
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHCCEEEEEECCCCCCHHHHHHHHH
AAGLLCFLLPVAAPLILSFFLGVAIKEAEIEPYQQLLEKTITYGATLFLGLVLGVLCEAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLLDPRVAILLVLGITALAISGLGGIAGGWFMWWWSKGKFNPVIGIAGVSCMPSTAKIAQ
HHCCHHHHHHHHHHHHHHHHHCCCCCCCCHHEEEECCCCCCCEEEECCCCCCCHHHHHHH
QIAFEASPYAMIMPLAMGAQICGVIVSAIAVGVFASTIGLVGG
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MFDQILTVFPGIGTLFVQEPVIAISRLGLMGLGFFLAYLGFKRTLEPLIMVPMGLGMMAV
CCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
NAGVMFLEAGQIGTLIIAPMVSDTEGLINILQIDFLQPVYNFTFTNSLVACLLFMGIGTM
CCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
ADISFILARPWASMTVALFAELGTFATLVIGYYCGLTPGQAAAVGSIGGADGPMVLFASL
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCHHHHHHHH
VMAKDLFVPISIIAYLYLSLCYAGYPYLVKWLIPEKYRGLEVEFEFPDVSQEAKFVFTIV
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHCCEEEEEECCCCCCHHHHHHHHH
AAGLLCFLLPVAAPLILSFFLGVAIKEAEIEPYQQLLEKTITYGATLFLGLVLGVLCEAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLLDPRVAILLVLGITALAISGLGGIAGGWFMWWWSKGKFNPVIGIAGVSCMPSTAKIAQ
HHCCHHHHHHHHHHHHHHHHHCCCCCCCCHHEEEECCCCCCCEEEECCCCCCCHHHHHHH
QIAFEASPYAMIMPLAMGAQICGVIVSAIAVGVFASTIGLVGG
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10027965 [H]