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The map label for this gene is ycdF [H]

Identifier: 83592642

GI number: 83592642

Start: 1540777

End: 1541610

Strand: Reverse

Name: ycdF [H]

Synonym: Rru_A1306

Alternate gene names: 83592642

Gene position: 1541610-1540777 (Counterclockwise)

Preceding gene: 83592643

Following gene: 83592641

Centisome position: 35.42

GC content: 67.99

Gene sequence:

>834_bases
ATGACCGATCCGTCGCCTTCACTTGCCGGCAAGACCCTGTTCATTTCGGGGGCCAGCCGGGGCATCGGCAAGGCCATCGC
CCTGCGCGCCGCCCAAGATGGCGCCAATATCGCCATCATCGCCAAGACCAGCGACCCCAACCCCAAACTGCCCGGCACCA
TCCACAGCGCGGCGACCGAGATCGAAGCCGCCGGCGGCAAGGCCCTGGCCCTGGCCGTGGATATCCGCGACGAGGCGGCG
ATCGCCGATGCCGTCGCCCGCACCCTGGAAACCTTCGGCGGCATCGATATCGTCATCAACAACGCCAGCGCCATCAGCCT
GTCGACCACCGCCGAAACGCCGATGAAGCGCTTCGATCTGATGGTCGGCATCAACACGCGCGGCACCTTCGCCGTCACCC
AGGCCTGCCTGCCGGCCCTGCGCAAGGCGGCCAATCCCCATATCCTGACGCTGTCGCCGCCGCCCTCGCTCGATCCCCGC
TGGTTCGGCCCCCATGTCGCCTATACGATCAGCAAGATGGGGATGAGCCTCTGCGTGCTCGGCTGGGCCGAGGAATTCCG
CGAGGCCGGCATCGCCGCCAACGCCCTGTGGCCGCGCACGGTGATCGATACCGCCGCCTTGCGCATGCTGGGCGGCGCGG
TCAAGCCGGAGTTCTGCCGCAAGCCCGAGATCGTCGCCGACGCCGCCCACGCCATCCTGACCCGTGACGCCCGCGCCTGC
ACCGGCCACTTTTTCCTCGATGACGAGGTTCTGGCCGAAGAGGGCATCACCGACCTGACCGCCTACGCCGTCTCCCCCGG
CCACCCTCTGCTCCCCGATCTGTTCTTGGAGTGA

Upstream 100 bases:

>100_bases
GCTATGGCGGCGCGGCCCCCGACGTCCCGGCCTGGATCGCGCCGTGGCTTCAGGCCGACCTCGCCTGCCAGCCCGCCTCC
CCGCCTTTGGAGAACCCCCT

Downstream 100 bases:

>100_bases
GGCGAAAAAGGATCCGCCCATGACGCTTCCCACCGCGCCCTTCGATGGGGCCGACTATCTGAGCGATACCGAAACCATCG
CGCATTATCTGACGGCCGCC

Product: short chain dehydrogenase

Products: NA

Alternate protein names: GLCDH-II; GDH-II; General stress protein 74; GSP74 [H]

Number of amino acids: Translated: 277; Mature: 276

Protein sequence:

>277_residues
MTDPSPSLAGKTLFISGASRGIGKAIALRAAQDGANIAIIAKTSDPNPKLPGTIHSAATEIEAAGGKALALAVDIRDEAA
IADAVARTLETFGGIDIVINNASAISLSTTAETPMKRFDLMVGINTRGTFAVTQACLPALRKAANPHILTLSPPPSLDPR
WFGPHVAYTISKMGMSLCVLGWAEEFREAGIAANALWPRTVIDTAALRMLGGAVKPEFCRKPEIVADAAHAILTRDARAC
TGHFFLDDEVLAEEGITDLTAYAVSPGHPLLPDLFLE

Sequences:

>Translated_277_residues
MTDPSPSLAGKTLFISGASRGIGKAIALRAAQDGANIAIIAKTSDPNPKLPGTIHSAATEIEAAGGKALALAVDIRDEAA
IADAVARTLETFGGIDIVINNASAISLSTTAETPMKRFDLMVGINTRGTFAVTQACLPALRKAANPHILTLSPPPSLDPR
WFGPHVAYTISKMGMSLCVLGWAEEFREAGIAANALWPRTVIDTAALRMLGGAVKPEFCRKPEIVADAAHAILTRDARAC
TGHFFLDDEVLAEEGITDLTAYAVSPGHPLLPDLFLE
>Mature_276_residues
TDPSPSLAGKTLFISGASRGIGKAIALRAAQDGANIAIIAKTSDPNPKLPGTIHSAATEIEAAGGKALALAVDIRDEAAI
ADAVARTLETFGGIDIVINNASAISLSTTAETPMKRFDLMVGINTRGTFAVTQACLPALRKAANPHILTLSPPPSLDPRW
FGPHVAYTISKMGMSLCVLGWAEEFREAGIAANALWPRTVIDTAALRMLGGAVKPEFCRKPEIVADAAHAILTRDARACT
GHFFLDDEVLAEEGITDLTAYAVSPGHPLLPDLFLE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI40254986, Length=270, Percent_Identity=58.5185185185185, Blast_Score=327, Evalue=9e-90,
Organism=Homo sapiens, GI209862901, Length=228, Percent_Identity=25.8771929824561, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI19923983, Length=228, Percent_Identity=25.8771929824561, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI4504505, Length=215, Percent_Identity=26.9767441860465, Blast_Score=68, Evalue=7e-12,
Organism=Escherichia coli, GI87082100, Length=198, Percent_Identity=31.8181818181818, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1789208, Length=194, Percent_Identity=28.3505154639175, Blast_Score=61, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI71982365, Length=270, Percent_Identity=56.6666666666667, Blast_Score=322, Evalue=2e-88,
Organism=Caenorhabditis elegans, GI17558628, Length=269, Percent_Identity=56.8773234200744, Blast_Score=314, Evalue=2e-86,
Organism=Caenorhabditis elegans, GI17564282, Length=149, Percent_Identity=28.8590604026846, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17568967, Length=220, Percent_Identity=28.1818181818182, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17562906, Length=204, Percent_Identity=25, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17544670, Length=224, Percent_Identity=27.2321428571429, Blast_Score=67, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6324126, Length=211, Percent_Identity=27.4881516587678, Blast_Score=62, Evalue=8e-11,
Organism=Drosophila melanogaster, GI21357673, Length=272, Percent_Identity=62.8676470588235, Blast_Score=351, Evalue=3e-97,
Organism=Drosophila melanogaster, GI21357041, Length=228, Percent_Identity=28.5087719298246, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24644339, Length=193, Percent_Identity=30.5699481865285, Blast_Score=78, Evalue=7e-15,
Organism=Drosophila melanogaster, GI28571526, Length=197, Percent_Identity=29.9492385786802, Blast_Score=76, Evalue=3e-14,
Organism=Drosophila melanogaster, GI23397609, Length=197, Percent_Identity=28.9340101522843, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI18859837, Length=230, Percent_Identity=26.9565217391304, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24639444, Length=219, Percent_Identity=29.6803652968037, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24643142, Length=251, Percent_Identity=25.0996015936255, Blast_Score=65, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: =1.1.1.47 [H]

Molecular weight: Translated: 29031; Mature: 28899

Theoretical pI: Translated: 5.63; Mature: 5.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDPSPSLAGKTLFISGASRGIGKAIALRAAQDGANIAIIAKTSDPNPKLPGTIHSAATE
CCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCCCHHHHHHH
IEAAGGKALALAVDIRDEAAIADAVARTLETFGGIDIVINNASAISLSTTAETPMKRFDL
HHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCEEEEEECCCEEEEECCCCCHHHHEEE
MVGINTRGTFAVTQACLPALRKAANPHILTLSPPPSLDPRWFGPHVAYTISKMGMSLCVL
EEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCHHHEEH
GWAEEFREAGIAANALWPRTVIDTAALRMLGGAVKPEFCRKPEIVADAAHAILTRDARAC
HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHHCCCHHH
TGHFFLDDEVLAEEGITDLTAYAVSPGHPLLPDLFLE
CCEEEECCHHHHHCCCCCEEEEEECCCCCCCHHHHCC
>Mature Secondary Structure 
TDPSPSLAGKTLFISGASRGIGKAIALRAAQDGANIAIIAKTSDPNPKLPGTIHSAATE
CCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCCCHHHHHHH
IEAAGGKALALAVDIRDEAAIADAVARTLETFGGIDIVINNASAISLSTTAETPMKRFDL
HHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCEEEEEECCCEEEEECCCCCHHHHEEE
MVGINTRGTFAVTQACLPALRKAANPHILTLSPPPSLDPRWFGPHVAYTISKMGMSLCVL
EEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCHHHEEH
GWAEEFREAGIAANALWPRTVIDTAALRMLGGAVKPEFCRKPEIVADAAHAILTRDARAC
HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHHCCCHHH
TGHFFLDDEVLAEEGITDLTAYAVSPGHPLLPDLFLE
CCEEEECCHHHHHCCCCCEEEEEECCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9274031; 9384377; 9298659 [H]