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The map label for this gene is nrdD [H]

Identifier: 83592612

GI number: 83592612

Start: 1499517

End: 1501538

Strand: Reverse

Name: nrdD [H]

Synonym: Rru_A1276

Alternate gene names: 83592612

Gene position: 1501538-1499517 (Counterclockwise)

Preceding gene: 83592615

Following gene: 83592611

Centisome position: 34.5

GC content: 61.67

Gene sequence:

>2022_bases
GTGATCCCCGAAATCGTCTCCCCGCCCCCTGGCGTCGTCAAGCGCAGTGGACGAACGGTTCCCTTTGACGCGGTCAAGAT
CCGCTCGGCCATCGAACGGGCCGGCAAGGCGACGGGCGATTTCGATCCCATCGAGGCCCAGCTTCTGGCGATCCAGGCGG
TCAAGGTGCTCAGTCACCGCTTCACCGAAGACGCCCCGCATATCGAACAAATCCAAGACGTGGTCGAACAGGTGCTGATT
TCGGCCAATCACTTCGCCACGGCGCGCGCCTATATCGTCTACCGCGAACAGCACGCCCGCCTGCGCATCGACCGCAAGAC
CGTTGTCGATGTCGAATCCTCGATCAATGAATATCTGGACCGTGCCGACTGGCGGGTGAACGCCAATGCCAATCAAGGCT
ATTCGCTGGGCGGCCTGATCTTGAACGTATCGGGCAAGGTGGTGGCCAATTACTGGCTTTCCCATGTTTACCCCCCCGAG
ATCGGCAATGCCCACCGCCAGGGCGATCTTCACATCCATGATCTTGACATGCTGGCGGGCTATTGCGCCGGCTGGTCGCT
GCGCACCTTGCTGACCGAGGGCCTGAACGGCGTTCCCGGCAAGGTCGAAGCCGGCCCGCCCAAGCATCTGTCGAGCGCCG
TCGGCCAGATCGTCAATTTCCTCGGCACCTTGCAAAACGAATGGGCCGGGGCCCAGGCCTTCAGTTCCTTCGATACCTAT
CTGGCACCTTTCGTGCGCGCCGACCGCCTGAGCTATGCCGAGGTCCGGCAGTTCATTCAGGAACTGGTCTATAATCTCAA
CGTCCCCTCGCGCTGGGGCACCCAGACGCCCTTTACCAATCTGACCTTCGACTGGACCTGCCCGGAGGACCTGCGCGATC
AGGTGCCGGTCATCGGCGGGGTCGAGGTCGATTTCACCTATGGCGATCTTCAGGTCGAAATGGACCTGATCAACCGCGCC
TATATGGAGGTGATGACCGAGGGCGACGCCAAGGGCCGGGTTTTCACCTTCCCCATCCCCACCTACAACATCACCAAGGA
TTTCCCCTGGGACAGCGAGAACGCCGATCGCCTGTTCGAGATGACGGCCAAATACGGCCTGCCCTATTTCCAGAACTTCG
TGAATTCCGAACTCAACCCGTCGATGATCCGCTCGATGTGCTGCCGCCTGCAGCTTGATCTGACCGAATTGCTCAAGCGC
GGCAACGGCCTGTTCGGCAGCGCCGAGCAAACCGGCTCGCTCGGCGTCGTCACCCTCAATTGCGCCCGCCTGGGGTATAT
CCACCAAGGCGACGAGGCCGGGCTGTTCGCCCGTCTCGACACCTTGCTTGATCTTGGCCGCAACAGTCTGGAGATCAAGC
GCAAGGTCATCCAGCGCCACATGGACCACGGGCTGTTCCCCTATACCAAGCGCTATCTGGGAACCTTGCGCAATCACTTC
TCGACCCTGGGCGTCAACGGCATCAACGAGATGATCCGCAACTTCACCGCAGGGGCCGAGGATATCACCACGCCCTATGG
TCACGCCCTCGCCGTGCGCTTCCTCGATCACGTGCGCGCCCGCATCGTCGGCTTCCAAGAGGAAACCGGCCATCTTTATA
ACCTGGAGGCCACCCCGGCCGAGGGCACGACCTATCGCTTCGCCCGCGAGGACCAGAAGCGCTTTCCCGACATCTTGCAG
GCCGGCACCCCGGACCAGCCCTATTACACCAATTCCTCGCAGCTGCCCGTCGGCTTCACCGATGATCCCTTCGAGGCCCT
GGAACGCCAGGAAGAGCTTCAGGCGAAATATACCGGCGGCACCGTCGTCCATCTGTACATGGGCAGCCGGGTCTCCTCGG
CCGAGGCTTGCAAACGTCTGGTCCGCCGGGCGCTCGAACGCTTCCGCCTGCCCTATATCACCGTCACCCCGACCTTCTCG
ATCTGTCCGACGCATGGCTACATCGAAGGCGAGCACGCCTTCTGCCCCAAATGCGACGAGGACATCATCGCCCGCAAGCG
CGCCAAAAGCGCCTGCTGCTAA

Upstream 100 bases:

>100_bases
CCGACCGGTACGCGCTTGCGCGTAGGTTTGGCTTGCCACGCGTCCCCTTCCTGCATCCCCGCCTTTCCCTACGCCGCTTC
TGACCGGAGTCCAAAGAACC

Downstream 100 bases:

>100_bases
CCCCTTTGATTAGCTCTGAAAGGACCTCTTCCATGACTCATCTTTCCGCCGTTTCCCTGCCCATCGAGCTTACCGATGAC
GAGCGCCAGCCCTGCGAGAT

Product: anaerobic ribonucleoside triphosphate reductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 673; Mature: 673

Protein sequence:

>673_residues
MIPEIVSPPPGVVKRSGRTVPFDAVKIRSAIERAGKATGDFDPIEAQLLAIQAVKVLSHRFTEDAPHIEQIQDVVEQVLI
SANHFATARAYIVYREQHARLRIDRKTVVDVESSINEYLDRADWRVNANANQGYSLGGLILNVSGKVVANYWLSHVYPPE
IGNAHRQGDLHIHDLDMLAGYCAGWSLRTLLTEGLNGVPGKVEAGPPKHLSSAVGQIVNFLGTLQNEWAGAQAFSSFDTY
LAPFVRADRLSYAEVRQFIQELVYNLNVPSRWGTQTPFTNLTFDWTCPEDLRDQVPVIGGVEVDFTYGDLQVEMDLINRA
YMEVMTEGDAKGRVFTFPIPTYNITKDFPWDSENADRLFEMTAKYGLPYFQNFVNSELNPSMIRSMCCRLQLDLTELLKR
GNGLFGSAEQTGSLGVVTLNCARLGYIHQGDEAGLFARLDTLLDLGRNSLEIKRKVIQRHMDHGLFPYTKRYLGTLRNHF
STLGVNGINEMIRNFTAGAEDITTPYGHALAVRFLDHVRARIVGFQEETGHLYNLEATPAEGTTYRFAREDQKRFPDILQ
AGTPDQPYYTNSSQLPVGFTDDPFEALERQEELQAKYTGGTVVHLYMGSRVSSAEACKRLVRRALERFRLPYITVTPTFS
ICPTHGYIEGEHAFCPKCDEDIIARKRAKSACC

Sequences:

>Translated_673_residues
MIPEIVSPPPGVVKRSGRTVPFDAVKIRSAIERAGKATGDFDPIEAQLLAIQAVKVLSHRFTEDAPHIEQIQDVVEQVLI
SANHFATARAYIVYREQHARLRIDRKTVVDVESSINEYLDRADWRVNANANQGYSLGGLILNVSGKVVANYWLSHVYPPE
IGNAHRQGDLHIHDLDMLAGYCAGWSLRTLLTEGLNGVPGKVEAGPPKHLSSAVGQIVNFLGTLQNEWAGAQAFSSFDTY
LAPFVRADRLSYAEVRQFIQELVYNLNVPSRWGTQTPFTNLTFDWTCPEDLRDQVPVIGGVEVDFTYGDLQVEMDLINRA
YMEVMTEGDAKGRVFTFPIPTYNITKDFPWDSENADRLFEMTAKYGLPYFQNFVNSELNPSMIRSMCCRLQLDLTELLKR
GNGLFGSAEQTGSLGVVTLNCARLGYIHQGDEAGLFARLDTLLDLGRNSLEIKRKVIQRHMDHGLFPYTKRYLGTLRNHF
STLGVNGINEMIRNFTAGAEDITTPYGHALAVRFLDHVRARIVGFQEETGHLYNLEATPAEGTTYRFAREDQKRFPDILQ
AGTPDQPYYTNSSQLPVGFTDDPFEALERQEELQAKYTGGTVVHLYMGSRVSSAEACKRLVRRALERFRLPYITVTPTFS
ICPTHGYIEGEHAFCPKCDEDIIARKRAKSACC
>Mature_673_residues
MIPEIVSPPPGVVKRSGRTVPFDAVKIRSAIERAGKATGDFDPIEAQLLAIQAVKVLSHRFTEDAPHIEQIQDVVEQVLI
SANHFATARAYIVYREQHARLRIDRKTVVDVESSINEYLDRADWRVNANANQGYSLGGLILNVSGKVVANYWLSHVYPPE
IGNAHRQGDLHIHDLDMLAGYCAGWSLRTLLTEGLNGVPGKVEAGPPKHLSSAVGQIVNFLGTLQNEWAGAQAFSSFDTY
LAPFVRADRLSYAEVRQFIQELVYNLNVPSRWGTQTPFTNLTFDWTCPEDLRDQVPVIGGVEVDFTYGDLQVEMDLINRA
YMEVMTEGDAKGRVFTFPIPTYNITKDFPWDSENADRLFEMTAKYGLPYFQNFVNSELNPSMIRSMCCRLQLDLTELLKR
GNGLFGSAEQTGSLGVVTLNCARLGYIHQGDEAGLFARLDTLLDLGRNSLEIKRKVIQRHMDHGLFPYTKRYLGTLRNHF
STLGVNGINEMIRNFTAGAEDITTPYGHALAVRFLDHVRARIVGFQEETGHLYNLEATPAEGTTYRFAREDQKRFPDILQ
AGTPDQPYYTNSSQLPVGFTDDPFEALERQEELQAKYTGGTVVHLYMGSRVSSAEACKRLVRRALERFRLPYITVTPTFS
ICPTHGYIEGEHAFCPKCDEDIIARKRAKSACC

Specific function: Unknown

COG id: COG1328

COG function: function code F; Oxygen-sensitive ribonucleoside-triphosphate reductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 glycine radical domain [H]

Homologues:

Organism=Escherichia coli, GI1790686, Length=641, Percent_Identity=25.7410296411856, Blast_Score=140, Evalue=3e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005144
- InterPro:   IPR001150
- InterPro:   IPR019777
- InterPro:   IPR012833 [H]

Pfam domain/function: PF03477 ATP-cone; PF01228 Gly_radical [H]

EC number: =1.17.4.2 [H]

Molecular weight: Translated: 75550; Mature: 75550

Theoretical pI: Translated: 6.30; Mature: 6.30

Prosite motif: PS51161 ATP_CONE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPEIVSPPPGVVKRSGRTVPFDAVKIRSAIERAGKATGDFDPIEAQLLAIQAVKVLSHR
CCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
FTEDAPHIEQIQDVVEQVLISANHFATARAYIVYREQHARLRIDRKTVVDVESSINEYLD
HCCCCCHHHHHHHHHHHHHHCCCCHHEEEEEEEEECCCCEEEECCHHHHHHHHHHHHHHH
RADWRVNANANQGYSLGGLILNVSGKVVANYWLSHVYPPEIGNAHRQGDLHIHDLDMLAG
HCCEEEECCCCCCCEECCEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEHHHHHHH
YCAGWSLRTLLTEGLNGVPGKVEAGPPKHLSSAVGQIVNFLGTLQNEWAGAQAFSSFDTY
HHCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
LAPFVRADRLSYAEVRQFIQELVYNLNVPSRWGTQTPFTNLTFDWTCPEDLRDQVPVIGG
HHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCHHHHHCCCEECC
VEVDFTYGDLQVEMDLINRAYMEVMTEGDAKGRVFTFPIPTYNITKDFPWDSENADRLFE
EEEEEEECCEEEHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHH
MTAKYGLPYFQNFVNSELNPSMIRSMCCRLQLDLTELLKRGNGLFGSAEQTGSLGVVTLN
HHHHHCCHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCEEEEEEE
CARLGYIHQGDEAGLFARLDTLLDLGRNSLEIKRKVIQRHMDHGLFPYTKRYLGTLRNHF
HHHCCCEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
STLGVNGINEMIRNFTAGAEDITTPYGHALAVRFLDHVRARIVGFQEETGHLYNLEATPA
HHCCCCHHHHHHHHHCCCCHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCC
EGTTYRFAREDQKRFPDILQAGTPDQPYYTNSSQLPVGFTDDPFEALERQEELQAKYTGG
CCCEEEHHHHHHHHCHHHHHCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
TVVHLYMGSRVSSAEACKRLVRRALERFRLPYITVTPTFSICPTHGYIEGEHAFCPKCDE
CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEECCCEEECCCCCEECCCCCCCCCCCH
DIIARKRAKSACC
HHHHHHHHHCCCC
>Mature Secondary Structure
MIPEIVSPPPGVVKRSGRTVPFDAVKIRSAIERAGKATGDFDPIEAQLLAIQAVKVLSHR
CCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
FTEDAPHIEQIQDVVEQVLISANHFATARAYIVYREQHARLRIDRKTVVDVESSINEYLD
HCCCCCHHHHHHHHHHHHHHCCCCHHEEEEEEEEECCCCEEEECCHHHHHHHHHHHHHHH
RADWRVNANANQGYSLGGLILNVSGKVVANYWLSHVYPPEIGNAHRQGDLHIHDLDMLAG
HCCEEEECCCCCCCEECCEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEHHHHHHH
YCAGWSLRTLLTEGLNGVPGKVEAGPPKHLSSAVGQIVNFLGTLQNEWAGAQAFSSFDTY
HHCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
LAPFVRADRLSYAEVRQFIQELVYNLNVPSRWGTQTPFTNLTFDWTCPEDLRDQVPVIGG
HHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCHHHHHCCCEECC
VEVDFTYGDLQVEMDLINRAYMEVMTEGDAKGRVFTFPIPTYNITKDFPWDSENADRLFE
EEEEEEECCEEEHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHH
MTAKYGLPYFQNFVNSELNPSMIRSMCCRLQLDLTELLKRGNGLFGSAEQTGSLGVVTLN
HHHHHCCHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCEEEEEEE
CARLGYIHQGDEAGLFARLDTLLDLGRNSLEIKRKVIQRHMDHGLFPYTKRYLGTLRNHF
HHHCCCEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
STLGVNGINEMIRNFTAGAEDITTPYGHALAVRFLDHVRARIVGFQEETGHLYNLEATPA
HHCCCCHHHHHHHHHCCCCHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCC
EGTTYRFAREDQKRFPDILQAGTPDQPYYTNSSQLPVGFTDDPFEALERQEELQAKYTGG
CCCEEEHHHHHHHHCHHHHHCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
TVVHLYMGSRVSSAEACKRLVRRALERFRLPYITVTPTFSICPTHGYIEGEHAFCPKCDE
CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEECCCEEECCCCCEECCCCCCCCCCCH
DIIARKRAKSACC
HHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8421692; 7610040; 9278503; 8083158; 7852304 [H]