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The map label for this gene is ctpA [H]

Identifier: 83592568

GI number: 83592568

Start: 1454447

End: 1455769

Strand: Reverse

Name: ctpA [H]

Synonym: Rru_A1232

Alternate gene names: 83592568

Gene position: 1455769-1454447 (Counterclockwise)

Preceding gene: 83592569

Following gene: 83592567

Centisome position: 33.44

GC content: 63.27

Gene sequence:

>1323_bases
ATGACCTGGAAGACTTGGATCTCGGCCAGCGCGATCGCCTTCACGGCGTTCACGGCTGGACAGCTTTATCATACCGAACA
GGCCGAGGCGGCCCGGGGAGAGGAGACCTATCAGCTTCTCGACCTGTTCGCCGACGTTTTCGAGCGGGTCAAACGCGACT
ATGTCGAGGAAGTTGGCGATGACCAACTGATCGAAGCCGCGATCAACGGCATGCTGACCTCGCTCGATCCCCACTCCAGT
TACCTGAACGCCAAGCACTTCGAGGACATGCAGGTCCAGACCAAGGGCGAATTCGGCGGCCTTGGCATTGAAGTGACCCA
GGAGGACGGGTTTATCAAGGTGGTCTCGCCGATCGACGAGACCCCCGCCGCCCTGGCCGGACTGCAGCCCGGCGATTTCA
TCACCCATCTCGACGGCGAAAGCGTTCTTGGGCTGTCGCTGGCCGATGCGGTGGAAAAGATGCGCGGCCCGGTGGGCAAG
GAAATCCGCCTCACCATTCAGCGGGTGGGCAAGGAACCCTTCGACGTCACCCTCAAGCGCGACACCATCAAGATCCAGTC
GGTCAAATCCCGCATGGAAGGCGATGTCGGCTATGTCCGCATCACCAGCTTCTCCGAGCAGACCGAGAAATCCCTGCGCG
AGGCGCTCGACGATCTGCGCTCCAAGGGCGGGGACTCGATCAAGGGCTATGTGCTTGATCTGCGCAACAACCCCGGTGGC
CTGCTGGAACAGGCGATCGCCGTGTCCGATGTCTTCCTCGACAAGGGCGAGATCGTCTCGACCCGCGCCCGCGACGCCAA
GGACACCCAGCGCTTCAACGCCCGGCCGGGTGATCTGACCAAGGGCATGCCCGTGGTCGTTCTGATCAACAGCGGGTCGG
CCTCGGCCAGCGAAATCGTCGCCGGCGCCTTGCAAGATCATCATCGGGCGCTGATCGTCGGCACCAAGTCCTTTGGCAAG
GGCTCGGTCCAGACCATCATGCCGCTGCCCGGCCATGGCGCCATGCGCCTGACCACGGCCCGCTACTACACGCCGTCCGG
GCGCTCCATCCAGGCGCTGGGCATCGATCCCGACATCCAGGTCGAACCCGCCCGGATCGAGGCGATCAGCGCCCAGAACG
AGATGCGCAGCGAAGCCGAACTGCGCAACGCCTTGAAGAACGACACCCTCAAGCCGAGCCTGGGGGTCAAGCCGGCCAAT
GGTCTGCCGCCCAGTCAGGTTCGCAACGACCAGACTCCGCAGGCCGATACCGACTATCAGCTCGCCCGCGCCGTGGATCT
GATCCGCGGTCTGGCGATCTATCGCTCCAAGTCCATCCAGTAA

Upstream 100 bases:

>100_bases
GCGGCGATGGTTCTCCTACGCTCTACGTTGAATTACGCCGCAAGGGCCAACCCATAAATCCCCTCCCCTGGCTTACGGCA
AGCAAAGGCAACGCTAGCGG

Downstream 100 bases:

>100_bases
GACAGGCGAGCTCACCGGTGCGCGACGGAAACAGGTGGTGAAAATCCCCTCCCTGCCCAAATCTGGCAAGCCGTCGCGCC
CCGGGGCCTCGCGCCCGGGC

Product: C-terminal processing peptidase S41A

Products: NA

Alternate protein names: C-terminal-processing protease [H]

Number of amino acids: Translated: 440; Mature: 439

Protein sequence:

>440_residues
MTWKTWISASAIAFTAFTAGQLYHTEQAEAARGEETYQLLDLFADVFERVKRDYVEEVGDDQLIEAAINGMLTSLDPHSS
YLNAKHFEDMQVQTKGEFGGLGIEVTQEDGFIKVVSPIDETPAALAGLQPGDFITHLDGESVLGLSLADAVEKMRGPVGK
EIRLTIQRVGKEPFDVTLKRDTIKIQSVKSRMEGDVGYVRITSFSEQTEKSLREALDDLRSKGGDSIKGYVLDLRNNPGG
LLEQAIAVSDVFLDKGEIVSTRARDAKDTQRFNARPGDLTKGMPVVVLINSGSASASEIVAGALQDHHRALIVGTKSFGK
GSVQTIMPLPGHGAMRLTTARYYTPSGRSIQALGIDPDIQVEPARIEAISAQNEMRSEAELRNALKNDTLKPSLGVKPAN
GLPPSQVRNDQTPQADTDYQLARAVDLIRGLAIYRSKSIQ

Sequences:

>Translated_440_residues
MTWKTWISASAIAFTAFTAGQLYHTEQAEAARGEETYQLLDLFADVFERVKRDYVEEVGDDQLIEAAINGMLTSLDPHSS
YLNAKHFEDMQVQTKGEFGGLGIEVTQEDGFIKVVSPIDETPAALAGLQPGDFITHLDGESVLGLSLADAVEKMRGPVGK
EIRLTIQRVGKEPFDVTLKRDTIKIQSVKSRMEGDVGYVRITSFSEQTEKSLREALDDLRSKGGDSIKGYVLDLRNNPGG
LLEQAIAVSDVFLDKGEIVSTRARDAKDTQRFNARPGDLTKGMPVVVLINSGSASASEIVAGALQDHHRALIVGTKSFGK
GSVQTIMPLPGHGAMRLTTARYYTPSGRSIQALGIDPDIQVEPARIEAISAQNEMRSEAELRNALKNDTLKPSLGVKPAN
GLPPSQVRNDQTPQADTDYQLARAVDLIRGLAIYRSKSIQ
>Mature_439_residues
TWKTWISASAIAFTAFTAGQLYHTEQAEAARGEETYQLLDLFADVFERVKRDYVEEVGDDQLIEAAINGMLTSLDPHSSY
LNAKHFEDMQVQTKGEFGGLGIEVTQEDGFIKVVSPIDETPAALAGLQPGDFITHLDGESVLGLSLADAVEKMRGPVGKE
IRLTIQRVGKEPFDVTLKRDTIKIQSVKSRMEGDVGYVRITSFSEQTEKSLREALDDLRSKGGDSIKGYVLDLRNNPGGL
LEQAIAVSDVFLDKGEIVSTRARDAKDTQRFNARPGDLTKGMPVVVLINSGSASASEIVAGALQDHHRALIVGTKSFGKG
SVQTIMPLPGHGAMRLTTARYYTPSGRSIQALGIDPDIQVEPARIEAISAQNEMRSEAELRNALKNDTLKPSLGVKPANG
LPPSQVRNDQTPQADTDYQLARAVDLIRGLAIYRSKSIQ

Specific function: Involved in protection of the bacterium from thermal and osmotic stresses (Potential) [H]

COG id: COG0793

COG function: function code M; Periplasmic protease

Gene ontology:

Cell location: Secreted (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PDZ (DHR) domain [H]

Homologues:

Organism=Escherichia coli, GI1788134, Length=330, Percent_Identity=30.6060606060606, Blast_Score=134, Evalue=1e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001478
- InterPro:   IPR005151
- InterPro:   IPR004447 [H]

Pfam domain/function: PF00595 PDZ; PF03572 Peptidase_S41 [H]

EC number: =3.4.21.102 [H]

Molecular weight: Translated: 47897; Mature: 47765

Theoretical pI: Translated: 5.13; Mature: 5.13

Prosite motif: PS50106 PDZ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTWKTWISASAIAFTAFTAGQLYHTEQAEAARGEETYQLLDLFADVFERVKRDYVEEVGD
CCCHHHHCCCHHEEEEECCCCEEECCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
DQLIEAAINGMLTSLDPHSSYLNAKHFEDMQVQTKGEFGGLGIEVTQEDGFIKVVSPIDE
HHHHHHHHHHHHCCCCCCHHHCCCCCCCCCEEEECCCCCCCEEEEECCCCEEEEECCCCC
TPAALAGLQPGDFITHLDGESVLGLSLADAVEKMRGPVGKEIRLTIQRVGKEPFDVTLKR
CCHHHHCCCCCCEEEECCCCCEECHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEEEEC
DTIKIQSVKSRMEGDVGYVRITSFSEQTEKSLREALDDLRSKGGDSIKGYVLDLRNNPGG
CEEHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCH
LLEQAIAVSDVFLDKGEIVSTRARDAKDTQRFNARPGDLTKGMPVVVLINSGSASASEIV
HHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHH
AGALQDHHRALIVGTKSFGKGSVQTIMPLPGHGAMRLTTARYYTPSGRSIQALGIDPDIQ
HHHHHCCCEEEEEEECCCCCCCCEEEEECCCCCCEEEEEEEEECCCCCEEEEECCCCCCE
VEPARIEAISAQNEMRSEAELRNALKNDTLKPSLGVKPANGLPPSQVRNDQTPQADTDYQ
ECCHHHEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCHH
LARAVDLIRGLAIYRSKSIQ
HHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TWKTWISASAIAFTAFTAGQLYHTEQAEAARGEETYQLLDLFADVFERVKRDYVEEVGD
CCHHHHCCCHHEEEEECCCCEEECCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
DQLIEAAINGMLTSLDPHSSYLNAKHFEDMQVQTKGEFGGLGIEVTQEDGFIKVVSPIDE
HHHHHHHHHHHHCCCCCCHHHCCCCCCCCCEEEECCCCCCCEEEEECCCCEEEEECCCCC
TPAALAGLQPGDFITHLDGESVLGLSLADAVEKMRGPVGKEIRLTIQRVGKEPFDVTLKR
CCHHHHCCCCCCEEEECCCCCEECHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEEEEC
DTIKIQSVKSRMEGDVGYVRITSFSEQTEKSLREALDDLRSKGGDSIKGYVLDLRNNPGG
CEEHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCH
LLEQAIAVSDVFLDKGEIVSTRARDAKDTQRFNARPGDLTKGMPVVVLINSGSASASEIV
HHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHH
AGALQDHHRALIVGTKSFGKGSVQTIMPLPGHGAMRLTTARYYTPSGRSIQALGIDPDIQ
HHHHHCCCEEEEEEECCCCCCCCEEEEECCCCCCEEEEEEEEECCCCCEEEEECCCCCCE
VEPARIEAISAQNEMRSEAELRNALKNDTLKPSLGVKPANGLPPSQVRNDQTPQADTDYQ
ECCHHHEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCHH
LARAVDLIRGLAIYRSKSIQ
HHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9141685 [H]