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The map label for this gene is yhcM [H]

Identifier: 83592544

GI number: 83592544

Start: 1425264

End: 1426412

Strand: Direct

Name: yhcM [H]

Synonym: Rru_A1208

Alternate gene names: 83592544

Gene position: 1425264-1426412 (Clockwise)

Preceding gene: 83592543

Following gene: 83592546

Centisome position: 32.74

GC content: 65.19

Gene sequence:

>1149_bases
ATGTCCCAAACACCTTTTGGGGTTTACCGCCAGAGGCTTGCCGAAGGCGGGCTGATTGGCGACCCCGCCCAGGAAAAGGC
CCTGGAACACCTGGACGCCTTGTTCGCCGAGGTTCTCGCCTATCGTCTGCCGCCACCGCCCGCGGAACGCTCGGCGGGCT
GGGGGGCGCGGCTGGGCTTTGGCCGCGAGCGGGAACGCGTCGCCCCCGCCGGCCCCAAGGGGCTTTATATCTTTGGCGAG
GTCGGGCGCGGCAAATCGATGCTGATGGATCTGTTCCATGGCTGCCTGCCCGAAGGCCGTGGGCGGCGCCTGCATTTCCA
CGGCTTCATGCGCGAGGCCCATGCCACCTTGCATGGCTGGCGTTCACAGGCGCAAGGGCGCGCTAGCGAGGGCGGCGATC
CGATCCCGCGCTTAGCCCGGGCGTTGACCCAGGGCAGGGCTGTGCTGTGCCTGGATGAAATGGATATCCAAGACATCGGC
GATGCGATGATCGTCGGCCGGCTGTTCAAAGAGATCAATGATCTGGGGGTGGTGGTGGTCACCACCTCGAACCGGGCGCC
CGATGATCTTTACAAGCACGGCCTTCAGCGCGAGAAGTTCCTGCCCTTCATCGCCTTGATCAAGCAGCGCCTTGGTCTGG
TCGAACTGGCCGGGCCGCGCGATTACCGCCTTGATCGCATGAAGGGCATGACCGTCTATTTCACCCCCACGGGCGCGGCG
GCCGATGACTGGCTGGGGCGTTGCCTGACCCGCTTGGCCGGAGAGGAAACCCCGGCCCCCGAGGTGGTCACGGTCCATGG
CCGGGCGGTTCCGGTGCGGGCGGCGACCCGTCAGGTCGGCTGTTTCTCGTTTGGCGATCTTTGCGCCAAGCCTTTGGGCA
GTCACGATTATCTGGCGATCGCCGAGCGCTTCGACACGGTGCTGATCTCGGATATCCCCCGTCTTGGTCCGCGCAACGCC
GACGAAGTCCGGCGCTTCGTCGTGCTGATCGACGCCCTTTATGATCACAAGACGGCCTTGATCTGTTCGGCCGAGGCGCC
GCCCCAGCGGCTTTATGACGATGGTCCCGGCGCCTTCGAGTTCCAGCGCACCGTGTCGCGGCTGATGGAGATGCAAAGCG
AGGCCTATCTGGCCCAGGCCCACGTATAG

Upstream 100 bases:

>100_bases
GGCGGCGGCCATCACGCGGCGGGAACCTGCCAAGTCGACAATGCCCAGGCCGCCGACGTTCTGGCCCGCCTCATCGCCCG
CATCACCGAAGACGGCTGAT

Downstream 100 bases:

>100_bases
GCTTGCTCGCCTATAGCATTCCCGCCGCCCCGGCCAGGGCCGGGATCAGCACGGCCAGCCAGGGCGGCGCTCGCCAAAAG
CGCAGCGCCAGGAAGGTCAG

Product: AFG1-like ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 382; Mature: 381

Protein sequence:

>382_residues
MSQTPFGVYRQRLAEGGLIGDPAQEKALEHLDALFAEVLAYRLPPPPAERSAGWGARLGFGRERERVAPAGPKGLYIFGE
VGRGKSMLMDLFHGCLPEGRGRRLHFHGFMREAHATLHGWRSQAQGRASEGGDPIPRLARALTQGRAVLCLDEMDIQDIG
DAMIVGRLFKEINDLGVVVVTTSNRAPDDLYKHGLQREKFLPFIALIKQRLGLVELAGPRDYRLDRMKGMTVYFTPTGAA
ADDWLGRCLTRLAGEETPAPEVVTVHGRAVPVRAATRQVGCFSFGDLCAKPLGSHDYLAIAERFDTVLISDIPRLGPRNA
DEVRRFVVLIDALYDHKTALICSAEAPPQRLYDDGPGAFEFQRTVSRLMEMQSEAYLAQAHV

Sequences:

>Translated_382_residues
MSQTPFGVYRQRLAEGGLIGDPAQEKALEHLDALFAEVLAYRLPPPPAERSAGWGARLGFGRERERVAPAGPKGLYIFGE
VGRGKSMLMDLFHGCLPEGRGRRLHFHGFMREAHATLHGWRSQAQGRASEGGDPIPRLARALTQGRAVLCLDEMDIQDIG
DAMIVGRLFKEINDLGVVVVTTSNRAPDDLYKHGLQREKFLPFIALIKQRLGLVELAGPRDYRLDRMKGMTVYFTPTGAA
ADDWLGRCLTRLAGEETPAPEVVTVHGRAVPVRAATRQVGCFSFGDLCAKPLGSHDYLAIAERFDTVLISDIPRLGPRNA
DEVRRFVVLIDALYDHKTALICSAEAPPQRLYDDGPGAFEFQRTVSRLMEMQSEAYLAQAHV
>Mature_381_residues
SQTPFGVYRQRLAEGGLIGDPAQEKALEHLDALFAEVLAYRLPPPPAERSAGWGARLGFGRERERVAPAGPKGLYIFGEV
GRGKSMLMDLFHGCLPEGRGRRLHFHGFMREAHATLHGWRSQAQGRASEGGDPIPRLARALTQGRAVLCLDEMDIQDIGD
AMIVGRLFKEINDLGVVVVTTSNRAPDDLYKHGLQREKFLPFIALIKQRLGLVELAGPRDYRLDRMKGMTVYFTPTGAAA
DDWLGRCLTRLAGEETPAPEVVTVHGRAVPVRAATRQVGCFSFGDLCAKPLGSHDYLAIAERFDTVLISDIPRLGPRNAD
EVRRFVVLIDALYDHKTALICSAEAPPQRLYDDGPGAFEFQRTVSRLMEMQSEAYLAQAHV

Specific function: Unknown

COG id: COG1485

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AFG1 ATPase family [H]

Homologues:

Organism=Homo sapiens, GI21918872, Length=411, Percent_Identity=33.0900243309002, Blast_Score=233, Evalue=2e-61,
Organism=Escherichia coli, GI1789627, Length=382, Percent_Identity=35.8638743455497, Blast_Score=238, Evalue=6e-64,
Organism=Caenorhabditis elegans, GI17505769, Length=412, Percent_Identity=31.5533980582524, Blast_Score=213, Evalue=1e-55,
Organism=Saccharomyces cerevisiae, GI6320783, Length=398, Percent_Identity=32.1608040201005, Blast_Score=194, Evalue=2e-50,
Organism=Drosophila melanogaster, GI20129913, Length=425, Percent_Identity=33.1764705882353, Blast_Score=220, Evalue=2e-57,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005654 [H]

Pfam domain/function: PF03969 AFG1_ATPase [H]

EC number: NA

Molecular weight: Translated: 42183; Mature: 42052

Theoretical pI: Translated: 7.61; Mature: 7.61

Prosite motif: PS00133 CARBOXYPEPT_ZN_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQTPFGVYRQRLAEGGLIGDPAQEKALEHLDALFAEVLAYRLPPPPAERSAGWGARLGF
CCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
GRERERVAPAGPKGLYIFGEVGRGKSMLMDLFHGCLPEGRGRRLHFHGFMREAHATLHGW
CCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHH
RSQAQGRASEGGDPIPRLARALTQGRAVLCLDEMDIQDIGDAMIVGRLFKEINDLGVVVV
HHHHCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCEEEEE
TTSNRAPDDLYKHGLQREKFLPFIALIKQRLGLVELAGPRDYRLDRMKGMTVYFTPTGAA
EECCCCCHHHHHCCCCHHHHHHHHHHHHHHCCEEEECCCCCCCHHHHCCCEEEECCCCCC
ADDWLGRCLTRLAGEETPAPEVVTVHGRAVPVRAATRQVGCFSFGDLCAKPLGSHDYLAI
HHHHHHHHHHHHCCCCCCCCCEEEECCCEEEHHHHHHHCCCCCHHHHHHCCCCCCCHHHH
AERFDTVLISDIPRLGPRNADEVRRFVVLIDALYDHKTALICSAEAPPQRLYDDGPGAFE
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHCCCCCCCHH
FQRTVSRLMEMQSEAYLAQAHV
HHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SQTPFGVYRQRLAEGGLIGDPAQEKALEHLDALFAEVLAYRLPPPPAERSAGWGARLGF
CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
GRERERVAPAGPKGLYIFGEVGRGKSMLMDLFHGCLPEGRGRRLHFHGFMREAHATLHGW
CCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHH
RSQAQGRASEGGDPIPRLARALTQGRAVLCLDEMDIQDIGDAMIVGRLFKEINDLGVVVV
HHHHCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCEEEEE
TTSNRAPDDLYKHGLQREKFLPFIALIKQRLGLVELAGPRDYRLDRMKGMTVYFTPTGAA
EECCCCCHHHHHCCCCHHHHHHHHHHHHHHCCEEEECCCCCCCHHHHCCCEEEECCCCCC
ADDWLGRCLTRLAGEETPAPEVVTVHGRAVPVRAATRQVGCFSFGDLCAKPLGSHDYLAI
HHHHHHHHHHHHCCCCCCCCCEEEECCCEEEHHHHHHHCCCCCHHHHHHCCCCCCCHHHH
AERFDTVLISDIPRLGPRNADEVRRFVVLIDALYDHKTALICSAEAPPQRLYDDGPGAFE
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHCCCCCCCHH
FQRTVSRLMEMQSEAYLAQAHV
HHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]