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The map label for this gene is yvrB [H]

Identifier: 83592473

GI number: 83592473

Start: 1342004

End: 1343032

Strand: Direct

Name: yvrB [H]

Synonym: Rru_A1137

Alternate gene names: 83592473

Gene position: 1342004-1343032 (Clockwise)

Preceding gene: 83592472

Following gene: 83592474

Centisome position: 30.83

GC content: 68.71

Gene sequence:

>1029_bases
ATGAAGGTCGGCCCCGCGGCTTTGCGGATCACCGCGATCTGTCTGCTTGCCGTCGTTGTCCTGGGGGTGGCGCTCGCCGC
GGGCGCCGCCCTTGGCGAAGCGCCGATCCCCCTCGTCACCGTGATCGAAGTGGTGGCCAACAAGGTTCTGGGCGCCGGCT
ATGCGCTCGACCCTATCGATGAGGGGATCATCTGGAACTACCGGGTCGCCCGCGCCCTCGTCGCCGCGTCTTGCGGGGCC
TCGCTGGCGGTCAGCGGCGTCGTCCTCCAATCCCTGCTGCTCAACGCCCTGGCCGATCCCTATATCCTCGGCATCTCGGC
CGGCGCGTCGAGCGGGGCGGTGGCGGTGGCGGTTCTCGGCCTGGGCGGCGGCCTCGTTTCGCTATCGGTCGGGGCCTTCC
TGGGCGCCGTCCTCGCTTTCGCGCTGGTGTCCTTCATCGCGCTGAAGGCCGGGCGCGGGCCGGCGGCGATCATCCTGGCC
GGCATCGCCGGATCGCAGTTGTTCAATGCGCTCACCTCGTTCGTCGTGACCAAGGTGGCGACCGCCGATCAGGCGCGCGG
CATCATGTTCTGGCTTCTGGGCAATCTTTCGGGCGTGCGCTGGCCCGACGTGTCGCTTGCCGTTCCGGTGGCGCTGGGCG
GGCTGGTCATTTGCCTGTTTTACGCCCGCGCCCTCGACGCCTTCGCCTTCGGCGCCGATTCCGCCGCCTCGCTCGGCATC
CCGGTGCGCCGGGTTTATATCATGATGATCGCCATCGCCGCCGGCACGACGGCGACGATGGTCAGCATCGTCGGATCGAT
CGGCTTCGTCGGCCTTGTCATCCCCCATGTGGCGCGCTTGACCGTCGGCGTTCGCCACAACAAGGTGCTGCCGGCGGCGG
CCCTGATCGGCGCGATCTTCATGATCGCCGCCGATATCCTGTCGCGAAAGATCATCCCCGGACAGGTCCTGCCGATCGGC
GTCATGACCGCCCTGGTCGGCGCCCCGGCCTTCGCCCTGATCCTCATGCGCAGGCCGGCGCACCGATGA

Upstream 100 bases:

>100_bases
GTATCGTGCCCCTTGACGCCCAGGCGATGAACCCGACCATCCGCACCATCGAGGGCATCGAGGTCGTGGCCGATGCGGTC
ATCAAGGCCGGCCTCGCCCA

Downstream 100 bases:

>100_bases
TGCTGTGCGCGCGCGATGTCAGCTTCACGATCGATCGGCGAACCATTGTCGACCGGGTTCATCTCGAGGTCGCGGCCGGC
GAGTTCTTCGGCATCGTCGG

Product: transport system permease protein

Products: ADP; phosphate; iron dicitrate [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 342; Mature: 342

Protein sequence:

>342_residues
MKVGPAALRITAICLLAVVVLGVALAAGAALGEAPIPLVTVIEVVANKVLGAGYALDPIDEGIIWNYRVARALVAASCGA
SLAVSGVVLQSLLLNALADPYILGISAGASSGAVAVAVLGLGGGLVSLSVGAFLGAVLAFALVSFIALKAGRGPAAIILA
GIAGSQLFNALTSFVVTKVATADQARGIMFWLLGNLSGVRWPDVSLAVPVALGGLVICLFYARALDAFAFGADSAASLGI
PVRRVYIMMIAIAAGTTATMVSIVGSIGFVGLVIPHVARLTVGVRHNKVLPAAALIGAIFMIAADILSRKIIPGQVLPIG
VMTALVGAPAFALILMRRPAHR

Sequences:

>Translated_342_residues
MKVGPAALRITAICLLAVVVLGVALAAGAALGEAPIPLVTVIEVVANKVLGAGYALDPIDEGIIWNYRVARALVAASCGA
SLAVSGVVLQSLLLNALADPYILGISAGASSGAVAVAVLGLGGGLVSLSVGAFLGAVLAFALVSFIALKAGRGPAAIILA
GIAGSQLFNALTSFVVTKVATADQARGIMFWLLGNLSGVRWPDVSLAVPVALGGLVICLFYARALDAFAFGADSAASLGI
PVRRVYIMMIAIAAGTTATMVSIVGSIGFVGLVIPHVARLTVGVRHNKVLPAAALIGAIFMIAADILSRKIIPGQVLPIG
VMTALVGAPAFALILMRRPAHR
>Mature_342_residues
MKVGPAALRITAICLLAVVVLGVALAAGAALGEAPIPLVTVIEVVANKVLGAGYALDPIDEGIIWNYRVARALVAASCGA
SLAVSGVVLQSLLLNALADPYILGISAGASSGAVAVAVLGLGGGLVSLSVGAFLGAVLAFALVSFIALKAGRGPAAIILA
GIAGSQLFNALTSFVVTKVATADQARGIMFWLLGNLSGVRWPDVSLAVPVALGGLVICLFYARALDAFAFGADSAASLGI
PVRRVYIMMIAIAAGTTATMVSIVGSIGFVGLVIPHVARLTVGVRHNKVLPAAALIGAIFMIAADILSRKIIPGQVLPIG
VMTALVGAPAFALILMRRPAHR

Specific function: Probably part of an ABC transporter complex. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0609

COG function: function code P; ABC-type Fe3+-siderophore transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790740, Length=272, Percent_Identity=35.6617647058824, Blast_Score=140, Evalue=9e-35,
Organism=Escherichia coli, GI1788004, Length=294, Percent_Identity=34.0136054421769, Blast_Score=127, Evalue=9e-31,
Organism=Escherichia coli, GI1790741, Length=286, Percent_Identity=34.2657342657343, Blast_Score=122, Evalue=4e-29,
Organism=Escherichia coli, GI1786805, Length=313, Percent_Identity=31.3099041533546, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI1786804, Length=277, Percent_Identity=29.2418772563177, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1786347, Length=274, Percent_Identity=29.9270072992701, Blast_Score=84, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000522 [H]

Pfam domain/function: PF01032 FecCD [H]

EC number: NA

Molecular weight: Translated: 34320; Mature: 34320

Theoretical pI: Translated: 10.55; Mature: 10.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVGPAALRITAICLLAVVVLGVALAAGAALGEAPIPLVTVIEVVANKVLGAGYALDPID
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC
EGIIWNYRVARALVAASCGASLAVSGVVLQSLLLNALADPYILGISAGASSGAVAVAVLG
CCCEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEEC
LGGGLVSLSVGAFLGAVLAFALVSFIALKAGRGPAAIILAGIAGSQLFNALTSFVVTKVA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHH
TADQARGIMFWLLGNLSGVRWPDVSLAVPVALGGLVICLFYARALDAFAFGADSAASLGI
HHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PVRRVYIMMIAIAAGTTATMVSIVGSIGFVGLVIPHVARLTVGVRHNKVLPAAALIGAIF
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
MIAADILSRKIIPGQVLPIGVMTALVGAPAFALILMRRPAHR
HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKVGPAALRITAICLLAVVVLGVALAAGAALGEAPIPLVTVIEVVANKVLGAGYALDPID
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC
EGIIWNYRVARALVAASCGASLAVSGVVLQSLLLNALADPYILGISAGASSGAVAVAVLG
CCCEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEEC
LGGGLVSLSVGAFLGAVLAFALVSFIALKAGRGPAAIILAGIAGSQLFNALTSFVVTKVA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHH
TADQARGIMFWLLGNLSGVRWPDVSLAVPVALGGLVICLFYARALDAFAFGADSAASLGI
HHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PVRRVYIMMIAIAAGTTATMVSIVGSIGFVGLVIPHVARLTVGVRHNKVLPAAALIGAIF
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
MIAADILSRKIIPGQVLPIGVMTALVGAPAFALILMRRPAHR
HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; iron dicitrate [Periplasm]; H2O [C]

Specific reaction: ATP + iron dicitrate [Periplasm] + H2O = ADP + phosphate + iron dicitrate [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377 [H]