Click here to switch to the map view.

The map label for this gene is 83592464

Identifier: 83592464

GI number: 83592464

Start: 1329614

End: 1330456

Strand: Direct

Name: 83592464

Synonym: Rru_A1128

Alternate gene names: NA

Gene position: 1329614-1330456 (Clockwise)

Preceding gene: 83592463

Following gene: 83592470

Centisome position: 30.55

GC content: 58.6

Gene sequence:

>843_bases
TTGTCGCGACCAGTTTATGCATCGCCTAGCTTCAGCCTCCTGTTCAACCGCCTTGGCCAGCAGGCGCCGCGCGCCTTGGC
GCAAGATCTCGGTCAGCGGATCGTCAAGCTCATCAGGCTGACGCAGGCGAGACACGGTGCTATCTTCCTTTATGGCGTAT
CGCTTCTTCTGGGAGGGGCTGGCAGGCTGGTTACCCGCCTCGATACGCCGCCTTCTTCAGACCGTCATCACCCAGTTTCC
CCCATAGCTCCTTACGAGATCGGCTACGTCCATATTGACAGCTGCGAGTTGTGCCACGCCGACGGCAAACTGGTGATGTT
CCTGGCTATCGATCGCGTCTCGAAGTTCACCTATGTCGATTTCCACGATTGCGCCGGAAAAATGGAAGGGGCAGCCTTCC
TCAGAAATGTCGTGGAGGCCTTCCCCTACCAGATCCACATCGTGCTCACCGACAACGGTATGGCCTTCGCTGATCTACCC
AAGAACCGCAACGGTCCCAGCCGCCGCTTCTTCGGCCCACATATCTTCGACCGGGTCTGCATCGAACACGGCATCGAGCA
TCGGCTCACCAAACCCTACCATCCGTGGACCAACGGCCAAGCCGAGCGGATGAACCGCACCATCAAGGACGCCACCATCA
AGGCCTACCACTATGACGACCTGGAAAGCCTCAAGGCTCACGTCTTGGCCTTTGTCACCGCCTACAACTTTGCCAAGCAC
CTCAAGGCACTCCGCTGGCGAACTCCCTACCAGGCGATCTGCGACGCCCGGACTAAAGACCCGTCAATCTTCAAGATCGA
CCCGCACCATCTCACCCAGGGACCACACACTCTGTCGTCCTGA

Upstream 100 bases:

>100_bases
TCGGCCGGACGAGGCGGCAAAAGCGGTTGAGGCGGATTGATCTGGGGAAGATCGCGCTTCTCCTCATCGATTGCCTTCGC
TTCGCCAATCGTTGCCATGA

Downstream 100 bases:

>100_bases
AAAAAAAGGGGGCGCCCCGCGGAGCGCCCCCGTTTCCATCGAATGTGTGTGATCGCTTACTGCAGGCGCTCGCCGTGCAG
CGAGATGTCGAGGCCTTCGC

Product: integrase catalytic subunit

Products: NA

Alternate protein names: Integrase Catalytic Region; Integrase Catalytic Subunit; Integrase; Integrase Protein; Integrase Catalytic Domain-Containing Protein; Integrase Catalytic Core; ISKpn8 Transposase; LOW QUALITY PROTEIN Integrase Catalytic Subunit; Hypothethical Protein Transposase; Instegrase; Transposase Of

Number of amino acids: Translated: 280; Mature: 279

Protein sequence:

>280_residues
MSRPVYASPSFSLLFNRLGQQAPRALAQDLGQRIVKLIRLTQARHGAIFLYGVSLLLGGAGRLVTRLDTPPSSDRHHPVS
PIAPYEIGYVHIDSCELCHADGKLVMFLAIDRVSKFTYVDFHDCAGKMEGAAFLRNVVEAFPYQIHIVLTDNGMAFADLP
KNRNGPSRRFFGPHIFDRVCIEHGIEHRLTKPYHPWTNGQAERMNRTIKDATIKAYHYDDLESLKAHVLAFVTAYNFAKH
LKALRWRTPYQAICDARTKDPSIFKIDPHHLTQGPHTLSS

Sequences:

>Translated_280_residues
MSRPVYASPSFSLLFNRLGQQAPRALAQDLGQRIVKLIRLTQARHGAIFLYGVSLLLGGAGRLVTRLDTPPSSDRHHPVS
PIAPYEIGYVHIDSCELCHADGKLVMFLAIDRVSKFTYVDFHDCAGKMEGAAFLRNVVEAFPYQIHIVLTDNGMAFADLP
KNRNGPSRRFFGPHIFDRVCIEHGIEHRLTKPYHPWTNGQAERMNRTIKDATIKAYHYDDLESLKAHVLAFVTAYNFAKH
LKALRWRTPYQAICDARTKDPSIFKIDPHHLTQGPHTLSS
>Mature_279_residues
SRPVYASPSFSLLFNRLGQQAPRALAQDLGQRIVKLIRLTQARHGAIFLYGVSLLLGGAGRLVTRLDTPPSSDRHHPVSP
IAPYEIGYVHIDSCELCHADGKLVMFLAIDRVSKFTYVDFHDCAGKMEGAAFLRNVVEAFPYQIHIVLTDNGMAFADLPK
NRNGPSRRFFGPHIFDRVCIEHGIEHRLTKPYHPWTNGQAERMNRTIKDATIKAYHYDDLESLKAHVLAFVTAYNFAKHL
KALRWRTPYQAICDARTKDPSIFKIDPHHLTQGPHTLSS

Specific function: Unknown

COG id: COG2801

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31652; Mature: 31521

Theoretical pI: Translated: 9.60; Mature: 9.60

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRPVYASPSFSLLFNRLGQQAPRALAQDLGQRIVKLIRLTQARHGAIFLYGVSLLLGGA
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHEEEHHHHHCCC
GRLVTRLDTPPSSDRHHPVSPIAPYEIGYVHIDSCELCHADGKLVMFLAIDRVSKFTYVD
CCEEEEECCCCCCCCCCCCCCCCCCEECEEEECCCCEECCCCCEEEEEEEHHHHHEEEEE
FHDCAGKMEGAAFLRNVVEAFPYQIHIVLTDNGMAFADLPKNRNGPSRRFFGPHIFDRVC
HHHHCCCCHHHHHHHHHHHHCCEEEEEEEECCCEEEEECCCCCCCCCCCCCCHHHHHHHH
IEHGIEHRLTKPYHPWTNGQAERMNRTIKDATIKAYHYDDLESLKAHVLAFVTAYNFAKH
HHHCHHHHCCCCCCCCCCCHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHHHHHHHHHH
LKALRWRTPYQAICDARTKDPSIFKIDPHHLTQGPHTLSS
HHHHHCCCCHHHHHCCCCCCCCEEEECHHHHCCCCCCCCC
>Mature Secondary Structure 
SRPVYASPSFSLLFNRLGQQAPRALAQDLGQRIVKLIRLTQARHGAIFLYGVSLLLGGA
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHEEEHHHHHCCC
GRLVTRLDTPPSSDRHHPVSPIAPYEIGYVHIDSCELCHADGKLVMFLAIDRVSKFTYVD
CCEEEEECCCCCCCCCCCCCCCCCCEECEEEECCCCEECCCCCEEEEEEEHHHHHEEEEE
FHDCAGKMEGAAFLRNVVEAFPYQIHIVLTDNGMAFADLPKNRNGPSRRFFGPHIFDRVC
HHHHCCCCHHHHHHHHHHHHCCEEEEEEEECCCEEEEECCCCCCCCCCCCCCHHHHHHHH
IEHGIEHRLTKPYHPWTNGQAERMNRTIKDATIKAYHYDDLESLKAHVLAFVTAYNFAKH
HHHCHHHHCCCCCCCCCCCHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHHHHHHHHHH
LKALRWRTPYQAICDARTKDPSIFKIDPHHLTQGPHTLSS
HHHHHCCCCHHHHHCCCCCCCCEEEECHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA