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The map label for this gene is rlpA [C]

Identifier: 83592361

GI number: 83592361

Start: 1213848

End: 1214456

Strand: Direct

Name: rlpA [C]

Synonym: Rru_A1025

Alternate gene names: 83592361

Gene position: 1213848-1214456 (Clockwise)

Preceding gene: 83592360

Following gene: 83592363

Centisome position: 27.89

GC content: 67.98

Gene sequence:

>609_bases
ATGGGGCATAGGCACCCACCTGCGGCCGCCGGGCCGACAGGACGTGAGCAGACGACACAAACAGGGGCCATGAGGTTCCA
CGCGACCGCGGCCATCGCTCCGCGGTCCATGACGAAGATCCCCGCCGCCCGATCGCGGCGCCTGCCTTGGCCGGCTTTTC
TGGCCATCACCCTGACAGCGCTCACGGCCGCTTGCGCCCAGACGGCGCCCGTGGTTGCCCCCGCCCCCGCCCCGATGGTG
GAGGTGATTCCCGCCAAGCCCGCCGTCGATCGGATCTATGTGTCCTGGTATGGCCGCAGCCATCAGGGCAAACGCACCGC
CAGCGGTGAGATCTTCGACGCCAACGGCATGACCGCAGCCCATCCCAAGCTTCCCTTCGGCAGCAAGGTCAAGATGCGCA
ATCCCGAGAGCGGCCAGTCCGTGGTCGTGCGGGTCAACGATCGCGGTCCCTTCGTCTCGACGCGCGGCATGGATGTTTCC
GAAGCCGCCGCCAAGGCCCTGGGGATCTGGGCCAAGGGCATCGCCCTGGTCGAAGTCGAATCTCCGCTTCTTGGCCGCCC
GATCACGCCGGGCCGGTTCACGGTGGACTCCCTGGCTAGCAGCCGGTAA

Upstream 100 bases:

>100_bases
GCCTTAGGGCAAGATAGGGCATTTTCCTTTTCTGGCTATTTTCGCTGGCGGGCATTCTCCGCCGTTCTCAATCAAGGACG
ACTTAGTGAGGGGGACCCTC

Downstream 100 bases:

>100_bases
GCCGCGCCGCCCTGGCCATCAGACAGACCTGATCTTGAGGTGGGGTCGCGCGCGGGGGCAGTCAATGCCACTCGTGGCGG
CACGCGTTGATGGGGGTCGT

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 202; Mature: 201

Protein sequence:

>202_residues
MGHRHPPAAAGPTGREQTTQTGAMRFHATAAIAPRSMTKIPAARSRRLPWPAFLAITLTALTAACAQTAPVVAPAPAPMV
EVIPAKPAVDRIYVSWYGRSHQGKRTASGEIFDANGMTAAHPKLPFGSKVKMRNPESGQSVVVRVNDRGPFVSTRGMDVS
EAAAKALGIWAKGIALVEVESPLLGRPITPGRFTVDSLASSR

Sequences:

>Translated_202_residues
MGHRHPPAAAGPTGREQTTQTGAMRFHATAAIAPRSMTKIPAARSRRLPWPAFLAITLTALTAACAQTAPVVAPAPAPMV
EVIPAKPAVDRIYVSWYGRSHQGKRTASGEIFDANGMTAAHPKLPFGSKVKMRNPESGQSVVVRVNDRGPFVSTRGMDVS
EAAAKALGIWAKGIALVEVESPLLGRPITPGRFTVDSLASSR
>Mature_201_residues
GHRHPPAAAGPTGREQTTQTGAMRFHATAAIAPRSMTKIPAARSRRLPWPAFLAITLTALTAACAQTAPVVAPAPAPMVE
VIPAKPAVDRIYVSWYGRSHQGKRTASGEIFDANGMTAAHPKLPFGSKVKMRNPESGQSVVVRVNDRGPFVSTRGMDVSE
AAAKALGIWAKGIALVEVESPLLGRPITPGRFTVDSLASSR

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=62, Percent_Identity=50, Blast_Score=63, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014733
- InterPro:   IPR009009
- InterPro:   IPR012997 [H]

Pfam domain/function: PF03330 DPBB_1 [H]

EC number: NA

Molecular weight: Translated: 21309; Mature: 21178

Theoretical pI: Translated: 11.64; Mature: 11.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGHRHPPAAAGPTGREQTTQTGAMRFHATAAIAPRSMTKIPAARSRRLPWPAFLAITLTA
CCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCHHHCCCHHCCCCCCHHHHHHHHHH
LTAACAQTAPVVAPAPAPMVEVIPAKPAVDRIYVSWYGRSHQGKRTASGEIFDANGMTAA
HHHHHHHCCCEECCCCCCEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCEEECCCCEEC
HPKLPFGSKVKMRNPESGQSVVVRVNDRGPFVSTRGMDVSEAAAKALGIWAKGIALVEVE
CCCCCCCCEEEECCCCCCCEEEEEECCCCCEEEECCCCHHHHHHHHHHHHHCCEEEEEEC
SPLLGRPITPGRFTVDSLASSR
CCCCCCCCCCCCEEHHHHHCCC
>Mature Secondary Structure 
GHRHPPAAAGPTGREQTTQTGAMRFHATAAIAPRSMTKIPAARSRRLPWPAFLAITLTA
CCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCHHHCCCHHCCCCCCHHHHHHHHHH
LTAACAQTAPVVAPAPAPMVEVIPAKPAVDRIYVSWYGRSHQGKRTASGEIFDANGMTAA
HHHHHHHCCCEECCCCCCEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCEEECCCCEEC
HPKLPFGSKVKMRNPESGQSVVVRVNDRGPFVSTRGMDVSEAAAKALGIWAKGIALVEVE
CCCCCCCCEEEECCCCCCCEEEEEECCCCCEEEECCCCHHHHHHHHHHHHHCCEEEEEEC
SPLLGRPITPGRFTVDSLASSR
CCCCCCCCCCCCEEHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]