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The map label for this gene is yciR [C]

Identifier: 83592326

GI number: 83592326

Start: 1176529

End: 1179009

Strand: Reverse

Name: yciR [C]

Synonym: Rru_A0990

Alternate gene names: 83592326

Gene position: 1179009-1176529 (Counterclockwise)

Preceding gene: 83592337

Following gene: 83592325

Centisome position: 27.09

GC content: 66.14

Gene sequence:

>2481_bases
ATGGAGCCATCCATCCAAGACCTGCGGTCCTCCGCCAGCGCGACCGATCCCAAACGCCCCCGACGCCTGCGCCTGGGCAT
TGGCACCCATCTCTGGATCGCCTTTCTCTCCATCGGCGCGCTGTCCACCGTGGTGACGCTGATCGCCTTTAATTCCTATA
ATCAGGCGACCGCCACCTTCAAAGCGATCACCCATGACCGTCTGCCGGCGATCGTGGCGGTGGCGAAGCTCGCCGACGAC
AGCAACGCCCTGCTGACCACCTTGCCCCATGTCGTTCTCGTCGACAGCGCCGGCACCTTAAGCGAGCATTGGCGCGATGT
GGCCGAGGCCGAAGAGCGCCTGAACCGTTCGATCGCCGCCGTCGAGGCCCTGCCCGCCCCCAACACCCGCCTTACGGATT
TCAGCGATTTGTCGGGGCGCATTTCGGCGCAGCTGCAAATCCTGCTGTCCGCCCTTCAGGAAGCCCGCGGCGCCCAGCGC
GACATCCTTGATCTGGCGACCCAGATGGATCTCCTCCATCAGAAGGTTCGCCTGCTGATGGCCGATGCCGGAACCCAGGG
CCGCATCCCCCCGGACTCGCTGTATCTGGCCACGCGCCTTTTGTCCTTGCTGGGCGAGGTTCTGGCCAGCGACGACGCCA
ACGATATCGCCGTCAATGCCGGTCGGATCGATCAATCGCTCCAGCGCCTGCAAGCCAGCATCTCGGCCAAGCCCAACGAC
GCCATCGCCGAGATGAACAATACCCTGATCGCCATCGGCTCCGGCCCGAATGGACTGGTCGCGCGCAAGCGTCTCGCCCT
GCGCGCCGGCGCCGTCGCCAAGGACCGCCTGCGCGACGTGCGGGCCCTGTCGCGCCAGATCGGCGAGCGGGTTCAGGGCA
TGTTGGGCGACACCATGATCGCCGTCGACGCCGATCGACAGGCGACGGAGAAACAGCTTCACCTGTCGAAGATCCTGCTG
GCGGCGACAAGCGCCACGGGGCTTCTTGGCGCCATCCTCATCGCCTGGCTCTACGTCGGGCGGGCGATCGTCGCCCGCCT
CGACCGGCTTTCCTATGGCATGCGGGAAATCGCCGATGGTCACCTCAAGGGATCGCTCCCCATCGGCGGGAAAGACGAAA
TCGGCGAGATGGCCCGCGCCGTATCGGTCTTTCGCGACGCCATGGAGCGCATTGATTATCTGGCCAGCAACGACAGCCTG
ACCGGCCTGCTCAACCGCCACGGCTTTCTCGCCGGGGGGGAACGCCTGCTGGCGCGCGGGCAGCGTCGGGGTTGGCTGAT
CAGCATCAACCTGCGGCGCTTCAAGGACGTCAATCAGATGTTCGGGCATCAGACCGGCGACACCATCCTGGGCGAGGTCG
CCGATCGCCTGCGCCGACTCGCCGGGCCCGAGGATCTGGTGGCCCGGCTCGGCGGCGATGATTTCGCCCTGCTCGCCCTC
GACCCCGATGACGAAGGCCGGGCCCTGGCGTTATGCCGAAACATTCTCGCCGCCTTGCGGCCGGCGATCGTCATCGGTCA
CGCCTCGCTCGATATCGAAGCCTGCATCGGCTTTGCCGGTTGGCCCGAGGACGCCGAGGATCAGGGAAGCCTGCTGCGCC
GCGCCGAACTGGCGATGCAACAGGCCAAGAACGATCCCGGCGACCCGATCTGCCGCTATCGCTCGGCGTTGAGCGAGGAT
CTCGAGGTCCGCTCGCAGGTTCGCAAGGATCTGCGCGCGGGCATCATCGCCGGAGAGTTGCGCCTGCTCTACCAGCCCAA
GGTCGATCTGCGCAGCGGCCGGGTGGTGGGCATGGAGGCTCTGGTCCGTTGGAACCATCCCCGGCACGGCCTCATCCCCC
CGGCCCGCTTCATCCCGGTGGCCGAAACCTCGGGCCTCATCATCCCCCTTGGCGAATGGGTCCTGGAGGAATGCTGCCGG
CAATTGCGCCTCTGGCGCGATGACGGCATGAGCGATCTGAAGGGGTCGGTCAACATGTCGCCGGTCCAGGTCTTCAGCCA
GGATGTGGCCGCCCTGGTCGCCGAGGCCCTGCACACCACCGGCCTGCCGGCCGAGGCCTTGGAAATCGAGATCACCGAAG
GCGTCTTCGTCCATGACGAGCAGCGCGCCCGCCGGCGGCTGGAAGGCTTGCGCGCCCTGGGCGTCGGACTGGCCATCGAT
GATTTCGGCACCGGCTACTCGGCGCTCGCCTATCTCAAACGCCTGCCCGCCACCTCGCTGAAGATCGACCAAAGCTTCAT
CCGCGAAGTGACCGACCAACCCGAACAGGCCCGGCTGTGTCGGGCGATCATCGGCGTCGGCCATGATTTCGGGCTGACGG
TGGTGGCCGAGGGCATCGAGACCGCCGAGCATTTGGCCTTTTTGCGCGCCGAAGGCTGTGATTTCGGCCAGGGTTACTAT
TTCGCCAAGCCGCTCGAGGCCCAAGATTTCGCCAAGGTGCTGCGTGACCAGCCCTGGCTGACCGGGGATGCCGCCCAATG
A

Upstream 100 bases:

>100_bases
GGATTCATTTTTTCATGAGCCCCCCCTTGCCTTGCCGGTCTTGTGAAAAATAAGCCTAAGGCGCTTACGCCGTTCGTGGA
GACGGCTTTTCGGAGACGTC

Downstream 100 bases:

>100_bases
TCGACCGCCGTCGCTTGATGACCGGCCTTGCCGGCCTGCCGCTTGTCGCCGCCTTGGCCGCGCTCGGAGGCCGGGCGCAA
GCGGGCGACGAGGAAGCGGC

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 826; Mature: 826

Protein sequence:

>826_residues
MEPSIQDLRSSASATDPKRPRRLRLGIGTHLWIAFLSIGALSTVVTLIAFNSYNQATATFKAITHDRLPAIVAVAKLADD
SNALLTTLPHVVLVDSAGTLSEHWRDVAEAEERLNRSIAAVEALPAPNTRLTDFSDLSGRISAQLQILLSALQEARGAQR
DILDLATQMDLLHQKVRLLMADAGTQGRIPPDSLYLATRLLSLLGEVLASDDANDIAVNAGRIDQSLQRLQASISAKPND
AIAEMNNTLIAIGSGPNGLVARKRLALRAGAVAKDRLRDVRALSRQIGERVQGMLGDTMIAVDADRQATEKQLHLSKILL
AATSATGLLGAILIAWLYVGRAIVARLDRLSYGMREIADGHLKGSLPIGGKDEIGEMARAVSVFRDAMERIDYLASNDSL
TGLLNRHGFLAGGERLLARGQRRGWLISINLRRFKDVNQMFGHQTGDTILGEVADRLRRLAGPEDLVARLGGDDFALLAL
DPDDEGRALALCRNILAALRPAIVIGHASLDIEACIGFAGWPEDAEDQGSLLRRAELAMQQAKNDPGDPICRYRSALSED
LEVRSQVRKDLRAGIIAGELRLLYQPKVDLRSGRVVGMEALVRWNHPRHGLIPPARFIPVAETSGLIIPLGEWVLEECCR
QLRLWRDDGMSDLKGSVNMSPVQVFSQDVAALVAEALHTTGLPAEALEIEITEGVFVHDEQRARRRLEGLRALGVGLAID
DFGTGYSALAYLKRLPATSLKIDQSFIREVTDQPEQARLCRAIIGVGHDFGLTVVAEGIETAEHLAFLRAEGCDFGQGYY
FAKPLEAQDFAKVLRDQPWLTGDAAQ

Sequences:

>Translated_826_residues
MEPSIQDLRSSASATDPKRPRRLRLGIGTHLWIAFLSIGALSTVVTLIAFNSYNQATATFKAITHDRLPAIVAVAKLADD
SNALLTTLPHVVLVDSAGTLSEHWRDVAEAEERLNRSIAAVEALPAPNTRLTDFSDLSGRISAQLQILLSALQEARGAQR
DILDLATQMDLLHQKVRLLMADAGTQGRIPPDSLYLATRLLSLLGEVLASDDANDIAVNAGRIDQSLQRLQASISAKPND
AIAEMNNTLIAIGSGPNGLVARKRLALRAGAVAKDRLRDVRALSRQIGERVQGMLGDTMIAVDADRQATEKQLHLSKILL
AATSATGLLGAILIAWLYVGRAIVARLDRLSYGMREIADGHLKGSLPIGGKDEIGEMARAVSVFRDAMERIDYLASNDSL
TGLLNRHGFLAGGERLLARGQRRGWLISINLRRFKDVNQMFGHQTGDTILGEVADRLRRLAGPEDLVARLGGDDFALLAL
DPDDEGRALALCRNILAALRPAIVIGHASLDIEACIGFAGWPEDAEDQGSLLRRAELAMQQAKNDPGDPICRYRSALSED
LEVRSQVRKDLRAGIIAGELRLLYQPKVDLRSGRVVGMEALVRWNHPRHGLIPPARFIPVAETSGLIIPLGEWVLEECCR
QLRLWRDDGMSDLKGSVNMSPVQVFSQDVAALVAEALHTTGLPAEALEIEITEGVFVHDEQRARRRLEGLRALGVGLAID
DFGTGYSALAYLKRLPATSLKIDQSFIREVTDQPEQARLCRAIIGVGHDFGLTVVAEGIETAEHLAFLRAEGCDFGQGYY
FAKPLEAQDFAKVLRDQPWLTGDAAQ
>Mature_826_residues
MEPSIQDLRSSASATDPKRPRRLRLGIGTHLWIAFLSIGALSTVVTLIAFNSYNQATATFKAITHDRLPAIVAVAKLADD
SNALLTTLPHVVLVDSAGTLSEHWRDVAEAEERLNRSIAAVEALPAPNTRLTDFSDLSGRISAQLQILLSALQEARGAQR
DILDLATQMDLLHQKVRLLMADAGTQGRIPPDSLYLATRLLSLLGEVLASDDANDIAVNAGRIDQSLQRLQASISAKPND
AIAEMNNTLIAIGSGPNGLVARKRLALRAGAVAKDRLRDVRALSRQIGERVQGMLGDTMIAVDADRQATEKQLHLSKILL
AATSATGLLGAILIAWLYVGRAIVARLDRLSYGMREIADGHLKGSLPIGGKDEIGEMARAVSVFRDAMERIDYLASNDSL
TGLLNRHGFLAGGERLLARGQRRGWLISINLRRFKDVNQMFGHQTGDTILGEVADRLRRLAGPEDLVARLGGDDFALLAL
DPDDEGRALALCRNILAALRPAIVIGHASLDIEACIGFAGWPEDAEDQGSLLRRAELAMQQAKNDPGDPICRYRSALSED
LEVRSQVRKDLRAGIIAGELRLLYQPKVDLRSGRVVGMEALVRWNHPRHGLIPPARFIPVAETSGLIIPLGEWVLEECCR
QLRLWRDDGMSDLKGSVNMSPVQVFSQDVAALVAEALHTTGLPAEALEIEITEGVFVHDEQRARRRLEGLRALGVGLAID
DFGTGYSALAYLKRLPATSLKIDQSFIREVTDQPEQARLCRAIIGVGHDFGLTVVAEGIETAEHLAFLRAEGCDFGQGYY
FAKPLEAQDFAKVLRDQPWLTGDAAQ

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=448, Percent_Identity=34.5982142857143, Blast_Score=256, Evalue=4e-69,
Organism=Escherichia coli, GI87081921, Length=422, Percent_Identity=32.9383886255924, Blast_Score=239, Evalue=6e-64,
Organism=Escherichia coli, GI226510982, Length=496, Percent_Identity=27.4193548387097, Blast_Score=164, Evalue=2e-41,
Organism=Escherichia coli, GI87081845, Length=251, Percent_Identity=35.8565737051793, Blast_Score=158, Evalue=2e-39,
Organism=Escherichia coli, GI1788502, Length=268, Percent_Identity=34.3283582089552, Blast_Score=152, Evalue=9e-38,
Organism=Escherichia coli, GI87081980, Length=262, Percent_Identity=34.3511450381679, Blast_Score=144, Evalue=3e-35,
Organism=Escherichia coli, GI1790496, Length=251, Percent_Identity=31.4741035856574, Blast_Score=141, Evalue=2e-34,
Organism=Escherichia coli, GI1787055, Length=286, Percent_Identity=29.020979020979, Blast_Score=125, Evalue=9e-30,
Organism=Escherichia coli, GI87081743, Length=230, Percent_Identity=32.6086956521739, Blast_Score=121, Evalue=1e-28,
Organism=Escherichia coli, GI1786507, Length=232, Percent_Identity=29.7413793103448, Blast_Score=121, Evalue=2e-28,
Organism=Escherichia coli, GI1788849, Length=276, Percent_Identity=30.4347826086957, Blast_Score=102, Evalue=1e-22,
Organism=Escherichia coli, GI87082096, Length=198, Percent_Identity=30.3030303030303, Blast_Score=95, Evalue=2e-20,
Organism=Escherichia coli, GI87081881, Length=203, Percent_Identity=31.0344827586207, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1788956, Length=162, Percent_Identity=31.4814814814815, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI1787410, Length=221, Percent_Identity=25.7918552036199, Blast_Score=67, Evalue=4e-12,
Organism=Escherichia coli, GI1788381, Length=164, Percent_Identity=31.0975609756098, Blast_Score=65, Evalue=2e-11,
Organism=Escherichia coli, GI87081977, Length=150, Percent_Identity=33.3333333333333, Blast_Score=64, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 89874; Mature: 89874

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: PS50885 HAMP ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEPSIQDLRSSASATDPKRPRRLRLGIGTHLWIAFLSIGALSTVVTLIAFNSYNQATATF
CCCCHHHHHHCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
KAITHDRLPAIVAVAKLADDSNALLTTLPHVVLVDSAGTLSEHWRDVAEAEERLNRSIAA
HHHHHHHHHHHHHHHHHCCCCCHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
VEALPAPNTRLTDFSDLSGRISAQLQILLSALQEARGAQRDILDLATQMDLLHQKVRLLM
HHCCCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
ADAGTQGRIPPDSLYLATRLLSLLGEVLASDDANDIAVNAGRIDQSLQRLQASISAKPND
HCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHCCCCCH
AIAEMNNTLIAIGSGPNGLVARKRLALRAGAVAKDRLRDVRALSRQIGERVQGMLGDTMI
HHHHCCCCEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEE
AVDADRQATEKQLHLSKILLAATSATGLLGAILIAWLYVGRAIVARLDRLSYGMREIADG
EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
HLKGSLPIGGKDEIGEMARAVSVFRDAMERIDYLASNDSLTGLLNRHGFLAGGERLLARG
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHCC
QRRGWLISINLRRFKDVNQMFGHQTGDTILGEVADRLRRLAGPEDLVARLGGDDFALLAL
CCCCEEEEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHCCCCCEEEEEE
DPDDEGRALALCRNILAALRPAIVIGHASLDIEACIGFAGWPEDAEDQGSLLRRAELAMQ
CCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
QAKNDPGDPICRYRSALSEDLEVRSQVRKDLRAGIIAGELRLLYQPKVDLRSGRVVGMEA
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCCCEEHHHH
LVRWNHPRHGLIPPARFIPVAETSGLIIPLGEWVLEECCRQLRLWRDDGMSDLKGSVNMS
HHHCCCCCCCCCCCHHEEECCCCCCCEEECHHHHHHHHHHHHHHHHCCCHHHHCCCCCCC
PVQVFSQDVAALVAEALHTTGLPAEALEIEITEGVFVHDEQRARRRLEGLRALGVGLAID
HHHHHHHHHHHHHHHHHHHCCCCCHHEEEEEECCEEEECHHHHHHHHHHHHHHHCCEEEC
DFGTGYSALAYLKRLPATSLKIDQSFIREVTDQPEQARLCRAIIGVGHDFGLTVVAEGIE
CCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHH
TAEHLAFLRAEGCDFGQGYYFAKPLEAQDFAKVLRDQPWLTGDAAQ
HHHHHHHHHHCCCCCCCCCEEECCCCHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MEPSIQDLRSSASATDPKRPRRLRLGIGTHLWIAFLSIGALSTVVTLIAFNSYNQATATF
CCCCHHHHHHCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
KAITHDRLPAIVAVAKLADDSNALLTTLPHVVLVDSAGTLSEHWRDVAEAEERLNRSIAA
HHHHHHHHHHHHHHHHHCCCCCHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
VEALPAPNTRLTDFSDLSGRISAQLQILLSALQEARGAQRDILDLATQMDLLHQKVRLLM
HHCCCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
ADAGTQGRIPPDSLYLATRLLSLLGEVLASDDANDIAVNAGRIDQSLQRLQASISAKPND
HCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHCCCCCH
AIAEMNNTLIAIGSGPNGLVARKRLALRAGAVAKDRLRDVRALSRQIGERVQGMLGDTMI
HHHHCCCCEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEE
AVDADRQATEKQLHLSKILLAATSATGLLGAILIAWLYVGRAIVARLDRLSYGMREIADG
EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
HLKGSLPIGGKDEIGEMARAVSVFRDAMERIDYLASNDSLTGLLNRHGFLAGGERLLARG
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHCC
QRRGWLISINLRRFKDVNQMFGHQTGDTILGEVADRLRRLAGPEDLVARLGGDDFALLAL
CCCCEEEEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHCCCCCEEEEEE
DPDDEGRALALCRNILAALRPAIVIGHASLDIEACIGFAGWPEDAEDQGSLLRRAELAMQ
CCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
QAKNDPGDPICRYRSALSEDLEVRSQVRKDLRAGIIAGELRLLYQPKVDLRSGRVVGMEA
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCCCEEHHHH
LVRWNHPRHGLIPPARFIPVAETSGLIIPLGEWVLEECCRQLRLWRDDGMSDLKGSVNMS
HHHCCCCCCCCCCCHHEEECCCCCCCEEECHHHHHHHHHHHHHHHHCCCHHHHCCCCCCC
PVQVFSQDVAALVAEALHTTGLPAEALEIEITEGVFVHDEQRARRRLEGLRALGVGLAID
HHHHHHHHHHHHHHHHHHHCCCCCHHEEEEEECCEEEECHHHHHHHHHHHHHHHCCEEEC
DFGTGYSALAYLKRLPATSLKIDQSFIREVTDQPEQARLCRAIIGVGHDFGLTVVAEGIE
CCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHH
TAEHLAFLRAEGCDFGQGYYFAKPLEAQDFAKVLRDQPWLTGDAAQ
HHHHHHHHHHCCCCCCCCCEEECCCCHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]