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The map label for this gene is acoR [H]

Identifier: 83592268

GI number: 83592268

Start: 1109040

End: 1111001

Strand: Direct

Name: acoR [H]

Synonym: Rru_A0932

Alternate gene names: 83592268

Gene position: 1109040-1111001 (Clockwise)

Preceding gene: 83592265

Following gene: 83592269

Centisome position: 25.48

GC content: 70.18

Gene sequence:

>1962_bases
ATGAATATCGCCAGCACCCAACCGGGGACCGCGCTGCGGCGCGCCCGTCACCTGCTTGAAGGCGGCAGTCTTCCGCCGGC
CGGACTGATTGCCCCGACCGTCGCCCATTCCTGGGAGCGCAGCCTGCGGGCCGGGCTGCTTCCCTTCAGCCCGCCCGCCG
TGGCCGATCATCTGGCCGCCCGCCATCTCGCCCAGGCGGTGGAGCGCCGGCGCGAACTGCTGATGCGCGCCCGCCCGGTC
ATGGATTATCTGCACGCCCAGACCAAGGGGTCCGACAGCGTCGTCATCCTCGCCGATGACAACGGCGTGCTGATCGAGGC
CCTGGGCGACGCCGCCTTTGTCGAACGCGCCGAACGGGTGGCCCTCAAGCCCGGGGCCTCGTGGCATGAACGCCACCGTG
GCACCAACGCCATCGGCACCGCCCTGGTCGAGGCCCAGCCGGTGGCGGTGCATGGCGGCGAGCATTTCTTCGAGCACAAT
CGCTTCCTGACCTGCGCCGCGGCGCCGATCGCCGGTCCCGATGGCCGGGTGCTGGGCGTGCTTGATATCTCCGGCCCGCA
GCGCGGCCGCCATCCCCACACCTTCGGGTTGGTGCGCGCCGCCACCCATATGATCGAGAACAAGCTGTTCGAGGCCCGCC
ACGAGGGGGAGTATCGGATCCGCTTCCATCCCCAGGCCGATGGCATCGGCACCCTGGCCGAGGGCATGGTCGCCTTGTCG
GAGGAAGGGCTGGTCATCGGCGCCAATCGGGCGGCCCTGGCTTTTCTCGCCATCACGCCAAGCGACATCGGCAAGGCGCT
GATCGAGGCGCTGTTGCCCTTGCGCATGGCCGATATCCTGGATCATGGCCACCGCCACCCCGGCACCACCCTGGGCTTGG
CCTGTCCGGGGGGAGGGCGGTTCTCCCTGCGCGTCGAGCCCGGCTGGCGGGCGGTGGTGCGGCCGGCGGCGATGCCCGCG
CCCGACCGGGTGCAAGATGCCCTGGCCGATCTTGATACGGGCGATCCGACGATGGCCGGGGCGATCGAGCGGGTGCGCAA
GATCCTCGGTAAGCCGATCCCCTTGCTGCTGCAAGGTGAATCCGGGGTGGGCAAGGAGGTGTTCGCCACCGCCCTTCATG
CCACCGGCCCCCGCCGTGGCCGTCCCTTCGTCGCCGTCAATTGCGCCGCCCTGCCCGAGCATCTGATCGAGGCCGAATTG
TTCGGCTATGCGCCGGGTGCCTTCACCGGAGCGCGGCGCGAAGGCTCGGCTGGGCGGATCCGCGAGGCCGAGGGCGGGAC
CTTGTTCCTTGACGAAATCGGCGATATGCCGCTGGCCCTGCAATGCCGGCTGCTGCGCGTGCTCCAGGACCGGCAGGTGG
TGCCCTTGGGCGGCGGCAAGGCGGTTAGCGTCGATTTCGCCCTGATCGCGGCCAGCCATCGCCCGCTCAAGGCCGAGGCC
GAGGCCGGGCGCTTCCGCGCCGATCTTTATTACCGCCTCAACGGCCTGACCCTCTGTCTGCCGCCCTTGCGGGCGCGCCG
CGATTTCGCCGCCCTGGTCGCGCGCATGATCGAAACGATGGAACCCGGCGCCGGCATCGGCCTTGATCCCGATGTCGCCG
ACGCCCTGGCCGGCCACGGCTGGCCGGGCAATCTGCGCCAGCTTGCCAATGTGCTGCGCTTCGCCTGCGCCCTGCGCGAT
CCCGGCGAAATCCGCCTGGGCTGGCACCATCTGCCCGAAGATCTGATCGAGGAACTGCGCTGCCCGTCAGGCGTGGACAC
CGACGCGGGAGCGGGGCCGGCGACCCTGCGCGCCGCCTCGGATTCCCTGATCGAGCGCATGGTGGCGGCCAGCGGCGGCA
ATCTGTCGGAAGCCGCCCGGCGTTTGGGCATCAGCCGCAATACCTTGTACCGCAGGATGAACGGCTGGGCCAAACCGCCG
GCGCCGCTCCCCATGGGGCCGGCCCGTCCCTGCATGAAATAG

Upstream 100 bases:

>100_bases
CGATGTTTTACTTGCGCTCTCCCCTTAGGTGCATATAGACACTAGGGGTAAGAGCGAGGGCGCCGCCATCAGGCAGGACG
CCCCAGGGAGGATCATCGTC

Downstream 100 bases:

>100_bases
CCCGCCGCTCCGCCGGACCGGGGTGCGCCATCCCCCCCCGTCCGGCGGTTTGCCGCGCGCGGGTCCCCTGGGAGAAGGGG
GGGACCGACCTGTTCAACTT

Product: sigma54 specific transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 653; Mature: 653

Protein sequence:

>653_residues
MNIASTQPGTALRRARHLLEGGSLPPAGLIAPTVAHSWERSLRAGLLPFSPPAVADHLAARHLAQAVERRRELLMRARPV
MDYLHAQTKGSDSVVILADDNGVLIEALGDAAFVERAERVALKPGASWHERHRGTNAIGTALVEAQPVAVHGGEHFFEHN
RFLTCAAAPIAGPDGRVLGVLDISGPQRGRHPHTFGLVRAATHMIENKLFEARHEGEYRIRFHPQADGIGTLAEGMVALS
EEGLVIGANRAALAFLAITPSDIGKALIEALLPLRMADILDHGHRHPGTTLGLACPGGGRFSLRVEPGWRAVVRPAAMPA
PDRVQDALADLDTGDPTMAGAIERVRKILGKPIPLLLQGESGVGKEVFATALHATGPRRGRPFVAVNCAALPEHLIEAEL
FGYAPGAFTGARREGSAGRIREAEGGTLFLDEIGDMPLALQCRLLRVLQDRQVVPLGGGKAVSVDFALIAASHRPLKAEA
EAGRFRADLYYRLNGLTLCLPPLRARRDFAALVARMIETMEPGAGIGLDPDVADALAGHGWPGNLRQLANVLRFACALRD
PGEIRLGWHHLPEDLIEELRCPSGVDTDAGAGPATLRAASDSLIERMVAASGGNLSEAARRLGISRNTLYRRMNGWAKPP
APLPMGPARPCMK

Sequences:

>Translated_653_residues
MNIASTQPGTALRRARHLLEGGSLPPAGLIAPTVAHSWERSLRAGLLPFSPPAVADHLAARHLAQAVERRRELLMRARPV
MDYLHAQTKGSDSVVILADDNGVLIEALGDAAFVERAERVALKPGASWHERHRGTNAIGTALVEAQPVAVHGGEHFFEHN
RFLTCAAAPIAGPDGRVLGVLDISGPQRGRHPHTFGLVRAATHMIENKLFEARHEGEYRIRFHPQADGIGTLAEGMVALS
EEGLVIGANRAALAFLAITPSDIGKALIEALLPLRMADILDHGHRHPGTTLGLACPGGGRFSLRVEPGWRAVVRPAAMPA
PDRVQDALADLDTGDPTMAGAIERVRKILGKPIPLLLQGESGVGKEVFATALHATGPRRGRPFVAVNCAALPEHLIEAEL
FGYAPGAFTGARREGSAGRIREAEGGTLFLDEIGDMPLALQCRLLRVLQDRQVVPLGGGKAVSVDFALIAASHRPLKAEA
EAGRFRADLYYRLNGLTLCLPPLRARRDFAALVARMIETMEPGAGIGLDPDVADALAGHGWPGNLRQLANVLRFACALRD
PGEIRLGWHHLPEDLIEELRCPSGVDTDAGAGPATLRAASDSLIERMVAASGGNLSEAARRLGISRNTLYRRMNGWAKPP
APLPMGPARPCMK
>Mature_653_residues
MNIASTQPGTALRRARHLLEGGSLPPAGLIAPTVAHSWERSLRAGLLPFSPPAVADHLAARHLAQAVERRRELLMRARPV
MDYLHAQTKGSDSVVILADDNGVLIEALGDAAFVERAERVALKPGASWHERHRGTNAIGTALVEAQPVAVHGGEHFFEHN
RFLTCAAAPIAGPDGRVLGVLDISGPQRGRHPHTFGLVRAATHMIENKLFEARHEGEYRIRFHPQADGIGTLAEGMVALS
EEGLVIGANRAALAFLAITPSDIGKALIEALLPLRMADILDHGHRHPGTTLGLACPGGGRFSLRVEPGWRAVVRPAAMPA
PDRVQDALADLDTGDPTMAGAIERVRKILGKPIPLLLQGESGVGKEVFATALHATGPRRGRPFVAVNCAALPEHLIEAEL
FGYAPGAFTGARREGSAGRIREAEGGTLFLDEIGDMPLALQCRLLRVLQDRQVVPLGGGKAVSVDFALIAASHRPLKAEA
EAGRFRADLYYRLNGLTLCLPPLRARRDFAALVARMIETMEPGAGIGLDPDVADALAGHGWPGNLRQLANVLRFACALRD
PGEIRLGWHHLPEDLIEELRCPSGVDTDAGAGPATLRAASDSLIERMVAASGGNLSEAARRLGISRNTLYRRMNGWAKPP
APLPMGPARPCMK

Specific function: Required for sigma-54-dependent transcription of acoXABC [H]

COG id: COG3284

COG function: function code QK; Transcriptional activator of acetoin/glycerol metabolism

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1789233, Length=464, Percent_Identity=32.5431034482759, Blast_Score=221, Evalue=1e-58,
Organism=Escherichia coli, GI1790437, Length=315, Percent_Identity=40.6349206349206, Blast_Score=207, Evalue=2e-54,
Organism=Escherichia coli, GI1788905, Length=359, Percent_Identity=35.933147632312, Blast_Score=206, Evalue=3e-54,
Organism=Escherichia coli, GI1788550, Length=324, Percent_Identity=39.1975308641975, Blast_Score=206, Evalue=4e-54,
Organism=Escherichia coli, GI1790299, Length=324, Percent_Identity=40.4320987654321, Blast_Score=201, Evalue=1e-52,
Organism=Escherichia coli, GI87082117, Length=326, Percent_Identity=37.1165644171779, Blast_Score=185, Evalue=6e-48,
Organism=Escherichia coli, GI1786524, Length=336, Percent_Identity=37.5, Blast_Score=181, Evalue=1e-46,
Organism=Escherichia coli, GI1789087, Length=305, Percent_Identity=38.0327868852459, Blast_Score=177, Evalue=1e-45,
Organism=Escherichia coli, GI1787583, Length=321, Percent_Identity=33.0218068535826, Blast_Score=171, Evalue=1e-43,
Organism=Escherichia coli, GI87082152, Length=308, Percent_Identity=36.038961038961, Blast_Score=165, Evalue=9e-42,
Organism=Escherichia coli, GI87081858, Length=633, Percent_Identity=24.9605055292259, Blast_Score=159, Evalue=7e-40,
Organism=Escherichia coli, GI87081872, Length=217, Percent_Identity=38.7096774193548, Blast_Score=145, Evalue=1e-35,
Organism=Escherichia coli, GI1789828, Length=318, Percent_Identity=33.6477987421384, Blast_Score=124, Evalue=3e-29,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR002078 [H]

Pfam domain/function: PF02954 HTH_8; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 69724; Mature: 69724

Theoretical pI: Translated: 8.43; Mature: 8.43

Prosite motif: PS00675 SIGMA54_INTERACT_1 ; PS00676 SIGMA54_INTERACT_2 ; PS00688 SIGMA54_INTERACT_3 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIASTQPGTALRRARHLLEGGSLPPAGLIAPTVAHSWERSLRAGLLPFSPPAVADHLAA
CCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
RHLAQAVERRRELLMRARPVMDYLHAQTKGSDSVVILADDNGVLIEALGDAAFVERAERV
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEEECCCHHHHHHHHHH
ALKPGASWHERHRGTNAIGTALVEAQPVAVHGGEHFFEHNRFLTCAAAPIAGPDGRVLGV
EECCCCCHHHHHCCCCHHHHHHHCCCCEEEECCHHHHHCCCEEEEEECCCCCCCCCEEEE
LDISGPQRGRHPHTFGLVRAATHMIENKLFEARHEGEYRIRFHPQADGIGTLAEGMVALS
EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCC
EEGLVIGANRAALAFLAITPSDIGKALIEALLPLRMADILDHGHRHPGTTLGLACPGGGR
CCCEEEECCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCE
FSLRVEPGWRAVVRPAAMPAPDRVQDALADLDTGDPTMAGAIERVRKILGKPIPLLLQGE
EEEEECCCCHHHCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCEEEECC
SGVGKEVFATALHATGPRRGRPFVAVNCAALPEHLIEAELFGYAPGAFTGARREGSAGRI
CCCCHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCE
REAEGGTLFLDEIGDMPLALQCRLLRVLQDRQVVPLGGGKAVSVDFALIAASHRPLKAEA
EECCCCEEEHHHHCCCCHHHHHHHHHHHCCCCEEECCCCCEEEEEEEEEEECCCCCCCCC
EAGRFRADLYYRLNGLTLCLPPLRARRDFAALVARMIETMEPGAGIGLDPDVADALAGHG
CCCCEEEEEEEEECCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCC
WPGNLRQLANVLRFACALRDPGEIRLGWHHLPEDLIEELRCPSGVDTDAGAGPATLRAAS
CCCCHHHHHHHHHHHHHCCCCCCEEECHHHCCHHHHHHHCCCCCCCCCCCCCCHHHHHHH
DSLIERMVAASGGNLSEAARRLGISRNTLYRRMNGWAKPPAPLPMGPARPCMK
HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNIASTQPGTALRRARHLLEGGSLPPAGLIAPTVAHSWERSLRAGLLPFSPPAVADHLAA
CCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
RHLAQAVERRRELLMRARPVMDYLHAQTKGSDSVVILADDNGVLIEALGDAAFVERAERV
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEEECCCHHHHHHHHHH
ALKPGASWHERHRGTNAIGTALVEAQPVAVHGGEHFFEHNRFLTCAAAPIAGPDGRVLGV
EECCCCCHHHHHCCCCHHHHHHHCCCCEEEECCHHHHHCCCEEEEEECCCCCCCCCEEEE
LDISGPQRGRHPHTFGLVRAATHMIENKLFEARHEGEYRIRFHPQADGIGTLAEGMVALS
EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCC
EEGLVIGANRAALAFLAITPSDIGKALIEALLPLRMADILDHGHRHPGTTLGLACPGGGR
CCCEEEECCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCE
FSLRVEPGWRAVVRPAAMPAPDRVQDALADLDTGDPTMAGAIERVRKILGKPIPLLLQGE
EEEEECCCCHHHCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCEEEECC
SGVGKEVFATALHATGPRRGRPFVAVNCAALPEHLIEAELFGYAPGAFTGARREGSAGRI
CCCCHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCE
REAEGGTLFLDEIGDMPLALQCRLLRVLQDRQVVPLGGGKAVSVDFALIAASHRPLKAEA
EECCCCEEEHHHHCCCCHHHHHHHHHHHCCCCEEECCCCCEEEEEEEEEEECCCCCCCCC
EAGRFRADLYYRLNGLTLCLPPLRARRDFAALVARMIETMEPGAGIGLDPDVADALAGHG
CCCCEEEEEEEEECCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCC
WPGNLRQLANVLRFACALRDPGEIRLGWHHLPEDLIEELRCPSGVDTDAGAGPATLRAAS
CCCCHHHHHHHHHHHHHCCCCCCEEECHHHCCHHHHHHHCCCCCCCCCCCCCCHHHHHHH
DSLIERMVAASGGNLSEAARRLGISRNTLYRRMNGWAKPPAPLPMGPARPCMK
HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1378052 [H]