Click here to switch to the map view.

The map label for this gene is fecI [H]

Identifier: 83592219

GI number: 83592219

Start: 1056769

End: 1057284

Strand: Direct

Name: fecI [H]

Synonym: Rru_A0883

Alternate gene names: 83592219

Gene position: 1056769-1057284 (Clockwise)

Preceding gene: 83592218

Following gene: 83592220

Centisome position: 24.28

GC content: 68.22

Gene sequence:

>516_bases
GTGTCTCAGCCCAACGACGAGGCTCTCTCTCTTTACCTGTCCCATCGCGGCGCGCTGGTCACCTATGCCAGCGGCATCCT
TGGCGATCGCGCCCAGGCCGAAGACGTGGTGCAAGAGGCTTGGCTGCGGTTCGCCGGGCGGGCGCCGGGGGGCGAGGGGG
TGCGCCAGCCTCTGGCCTATCTTTACCGCGTCGTCCGCAACACCGCTGTGGATTGCCTGCGTCGGCTGAGTGCCGAGGAG
CGCCGCAACGAGGCCGGCGAGATCCTGTCCGACCCCGACCGTCAGGCCCCTTCACCCGAGGAGATCGCCTTGGGGCGCGA
CCATCTGCGCCTTGTCGCTGCGGCTTTGTCCGAACTGCCCGAGCGCAATCGCCGGGCTTTTGAGTTGCAGCGGTTCGAAG
GCTTGTCGTTCCAGCAGATCGCCCAGCACCTGGAGGTTTCCCCGGCCACCGCCCACCGTTTGGCCCGCGACGCCATGGTC
CACGTGATGGGGCGCCTGCAGGGCGCGCAAGGGTAA

Upstream 100 bases:

>100_bases
TGTTTTCCCCAAGGCCGGCGGTTGCTTGGGCTTTTTCATTGCACGGATCGACCTGTTGCGGGTAGAGGGATATGCTAATG
CGTCTTATTTGGATCGTGCG

Downstream 100 bases:

>100_bases
GGCGCCATGATCCCCGCCGATCATTCGCTTCCCGCCAGCGTTCTTGAACAGGCCTCCGACTGGGTCTTTCGCCAGCAAGG
AGCCCTGGGGGAGCCGCCCC

Product: sigma-24 (FecI)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 171; Mature: 170

Protein sequence:

>171_residues
MSQPNDEALSLYLSHRGALVTYASGILGDRAQAEDVVQEAWLRFAGRAPGGEGVRQPLAYLYRVVRNTAVDCLRRLSAEE
RRNEAGEILSDPDRQAPSPEEIALGRDHLRLVAAALSELPERNRRAFELQRFEGLSFQQIAQHLEVSPATAHRLARDAMV
HVMGRLQGAQG

Sequences:

>Translated_171_residues
MSQPNDEALSLYLSHRGALVTYASGILGDRAQAEDVVQEAWLRFAGRAPGGEGVRQPLAYLYRVVRNTAVDCLRRLSAEE
RRNEAGEILSDPDRQAPSPEEIALGRDHLRLVAAALSELPERNRRAFELQRFEGLSFQQIAQHLEVSPATAHRLARDAMV
HVMGRLQGAQG
>Mature_170_residues
SQPNDEALSLYLSHRGALVTYASGILGDRAQAEDVVQEAWLRFAGRAPGGEGVRQPLAYLYRVVRNTAVDCLRRLSAEER
RNEAGEILSDPDRQAPSPEEIALGRDHLRLVAAALSELPERNRRAFELQRFEGLSFQQIAQHLEVSPATAHRLARDAMVH
VMGRLQGAQG

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates the fec genes for iron dicitrate transport (Probable) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790746, Length=154, Percent_Identity=29.2207792207792, Blast_Score=67, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 18950; Mature: 18818

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQPNDEALSLYLSHRGALVTYASGILGDRAQAEDVVQEAWLRFAGRAPGGEGVRQPLAY
CCCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
LYRVVRNTAVDCLRRLSAEERRNEAGEILSDPDRQAPSPEEIALGRDHLRLVAAALSELP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHH
ERNRRAFELQRFEGLSFQQIAQHLEVSPATAHRLARDAMVHVMGRLQGAQG
HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SQPNDEALSLYLSHRGALVTYASGILGDRAQAEDVVQEAWLRFAGRAPGGEGVRQPLAY
CCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
LYRVVRNTAVDCLRRLSAEERRNEAGEILSDPDRQAPSPEEIALGRDHLRLVAAALSELP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHH
ERNRRAFELQRFEGLSFQQIAQHLEVSPATAHRLARDAMVHVMGRLQGAQG
HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2254251; 7610040; 9278503; 8052622 [H]