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The map label for this gene is pchR [H]

Identifier: 83592198

GI number: 83592198

Start: 1027507

End: 1028394

Strand: Direct

Name: pchR [H]

Synonym: Rru_A0862

Alternate gene names: 83592198

Gene position: 1027507-1028394 (Clockwise)

Preceding gene: 83592192

Following gene: 83592201

Centisome position: 23.61

GC content: 63.85

Gene sequence:

>888_bases
ATGCGCGAACTTCGCTCCTCTGATTTTTTCACGGATCGGCCCGCCGTGACGGGGATGCCGTTGGAGGTGGAGGTCAAACC
CGTTTCGCTGCAGACGGGGATGATGGTGTCCTTGATGTCTCTTCCTTCGGCCTTTGAGGCCACCGCCTATAACGACCGGC
CCTTTATTCATTTTAGTTGTTTGTTCCAGGGAATGGTCGATGTGACCTTTGGCGGTGGCGCGTTCCGTTTGGAGCCCGGG
GCCTTGCTGACCAGCTACGCCCCGGAGGAGCGCTTTCATTTGTCGTTTTCCGGGCCCTATCGCACCATCGAACTGATGGT
GACGCCCGAAACCCTGGCGGCGCTGGCGGGACCCCAGTACGATCGCATCGGCGACGATATCCACCGGGGTTTTTGCGTGC
ATCACAAGGCGAACGACCGCCGTGTCCGCGATGCCGCCGCCCGCCTCGCCTGGCTCATGGACGAGGGGCAGGCGCCGCCC
CTGCTGATCCATGCCGCCACCCTCGAATTCCTCGCCTGGCACCTCGCGTCCTATCGGTCCGCCGAGGATGGCGAAGCGGT
GCCCTTGCGGGAGCGCAAGCTGCTGCTGGCGGCGCGGGAGCGGTTGCTTCAAGATCTCAGCGCCCCGCCGACGATCGCCG
AACTGGCCCGGGAGACCGGCCTGAACCAGCTCAAGCTCAAGCGTGGGTTCAAGACGGTTTTCGGTCATAGCGTCTATGGG
CTATTCCAACGCGAACGCATGGATCGGGCGCGGCTGCTGCTCCAGCACCATGGGGTGACGGAAACCGCCATGATGCTGGG
CTATAGCAATGTCAGCCATTTCGGCGCGGCCTTCCGCAAGCAGTTCGGCATCCTGCCCCGCGAAGCCCGCCGGGGCGCCC
TCGGGTGA

Upstream 100 bases:

>100_bases
CTGGAATTGATAGTAAGAATTAATTTCTTCTGCATCTAACGGAAAGGAACCGCGGTGGGAGAGCGCAAGAGCAGTATCTC
GAACAGCCCGGAGGGCTCCC

Downstream 100 bases:

>100_bases
TCCGATAAGCCGGGCGACCGCTTAGCGGCTTTGTTCCCGCCACAGCGCGGCATAAAGGCCGGCCTGGGCGAGGAGGTCGT
CATGGCGGCCCTGTTCAAGG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MRELRSSDFFTDRPAVTGMPLEVEVKPVSLQTGMMVSLMSLPSAFEATAYNDRPFIHFSCLFQGMVDVTFGGGAFRLEPG
ALLTSYAPEERFHLSFSGPYRTIELMVTPETLAALAGPQYDRIGDDIHRGFCVHHKANDRRVRDAAARLAWLMDEGQAPP
LLIHAATLEFLAWHLASYRSAEDGEAVPLRERKLLLAARERLLQDLSAPPTIAELARETGLNQLKLKRGFKTVFGHSVYG
LFQRERMDRARLLLQHHGVTETAMMLGYSNVSHFGAAFRKQFGILPREARRGALG

Sequences:

>Translated_295_residues
MRELRSSDFFTDRPAVTGMPLEVEVKPVSLQTGMMVSLMSLPSAFEATAYNDRPFIHFSCLFQGMVDVTFGGGAFRLEPG
ALLTSYAPEERFHLSFSGPYRTIELMVTPETLAALAGPQYDRIGDDIHRGFCVHHKANDRRVRDAAARLAWLMDEGQAPP
LLIHAATLEFLAWHLASYRSAEDGEAVPLRERKLLLAARERLLQDLSAPPTIAELARETGLNQLKLKRGFKTVFGHSVYG
LFQRERMDRARLLLQHHGVTETAMMLGYSNVSHFGAAFRKQFGILPREARRGALG
>Mature_295_residues
MRELRSSDFFTDRPAVTGMPLEVEVKPVSLQTGMMVSLMSLPSAFEATAYNDRPFIHFSCLFQGMVDVTFGGGAFRLEPG
ALLTSYAPEERFHLSFSGPYRTIELMVTPETLAALAGPQYDRIGDDIHRGFCVHHKANDRRVRDAAARLAWLMDEGQAPP
LLIHAATLEFLAWHLASYRSAEDGEAVPLRERKLLLAARERLLQDLSAPPTIAELARETGLNQLKLKRGFKTVFGHSVYG
LFQRERMDRARLLLQHHGVTETAMMLGYSNVSHFGAAFRKQFGILPREARRGALG

Specific function: Positive activator of the genes for pyochelin and ferripyochelin receptors [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 32999; Mature: 32999

Theoretical pI: Translated: 8.68; Mature: 8.68

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2 ; PS00228 TUBULIN_B_AUTOREG

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRELRSSDFFTDRPAVTGMPLEVEVKPVSLQTGMMVSLMSLPSAFEATAYNDRPFIHFSC
CCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCHHHHHHHCCCHHHHCCCCCCCCEEHHH
LFQGMVDVTFGGGAFRLEPGALLTSYAPEERFHLSFSGPYRTIELMVTPETLAALAGPQY
HHHCCEEEEECCCEEEECCCCCEECCCCCCEEEEEECCCCEEEEEEECHHHHHHHCCCCH
DRIGDDIHRGFCVHHKANDRRVRDAAARLAWLMDEGQAPPLLIHAATLEFLAWHLASYRS
HHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHCC
AEDGEAVPLRERKLLLAARERLLQDLSAPPTIAELARETGLNQLKLKRGFKTVFGHSVYG
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
LFQRERMDRARLLLQHHGVTETAMMLGYSNVSHFGAAFRKQFGILPREARRGALG
HHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHCCCCC
>Mature Secondary Structure
MRELRSSDFFTDRPAVTGMPLEVEVKPVSLQTGMMVSLMSLPSAFEATAYNDRPFIHFSC
CCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCHHHHHHHCCCHHHHCCCCCCCCEEHHH
LFQGMVDVTFGGGAFRLEPGALLTSYAPEERFHLSFSGPYRTIELMVTPETLAALAGPQY
HHHCCEEEEECCCEEEECCCCCEECCCCCCEEEEEECCCCEEEEEEECHHHHHHHCCCCH
DRIGDDIHRGFCVHHKANDRRVRDAAARLAWLMDEGQAPPLLIHAATLEFLAWHLASYRS
HHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHCC
AEDGEAVPLRERKLLLAARERLLQDLSAPPTIAELARETGLNQLKLKRGFKTVFGHSVYG
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
LFQRERMDRARLLLQHHGVTETAMMLGYSNVSHFGAAFRKQFGILPREARRGALG
HHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8397186; 10984043 [H]