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The map label for this gene is trbB [H]

Identifier: 83592147

GI number: 83592147

Start: 961964

End: 962944

Strand: Reverse

Name: trbB [H]

Synonym: Rru_A0808

Alternate gene names: 83592147

Gene position: 962944-961964 (Counterclockwise)

Preceding gene: 83592150

Following gene: 83592146

Centisome position: 22.12

GC content: 68.4

Gene sequence:

>981_bases
ATGACCGTTGCCGCCACCCGGTCCGAAGCCTTTGTTCGCAGCGCGCGCATGCTGCGCACGGCGCTGGGGCCGGCCATTGC
CGCCTTCCTGGAAGACCCCACCATCGTCGAGGTGATGCTCAACCCCGATGGCCGACTGTGGGTGGATCGGCTGTCGGGCG
GGCTCGCGGATAGCGGCGCCACCCTGTCGCCGGCCGATGGCGAACGGATCGTTCGGCTGGTGGCGCATCATGTCGGCGCC
GAAGTTCACGCCAACAGCCCTCGCGTTTCCACCGAACTCCCCGAGACCGGCGAGCGCTTCGAGGGCCTGCTTCCGCCCGT
CGTGGCGGCCCCGGCTTTCGCCATCCGCAAACCGGCGGTGGCGGTGTTCACCTTCGACGACTACGTCGTCGCCGGCATCA
TGACGGCGGAGCAGGCGGCTGTGTTGCGCCACGCCGTGGCCACCCGCCGCAATATCCTGGTGGCCGGCGGCACCTCGACC
GGCAAGACCACGCTGACCAACGCCCTGCTCACCGAGGTCGCCAAGACCACCGACCGCGTAGTGTTGATCGAGGACACCCG
CGAACTGCAATGTCGGACCCAAAACTTGGTGGCATTGCGCACCAAGGAAGGGATCGCCTCGCTTTCCGATCTCGTCCGCT
CCTCCCTTCGTCTGCGTCCCGACCGCATCCCCATTGGCGAGGTACGCGGCGCCGAGGCCCTCGATCTGCTCAAGGCCTGG
GGCACCGGCCATCCCGGCGGCATCGGCACCATCCATGCCGGCACCGCGCTCGGCGCGCTGCGCCGCCTCGAACAACTCAT
CCAGGAGGCGGTGATCACCGTGCCCAAAGCCCTGATCGCCGAGACCATCACCGTCGTCGCCGTGTTGGCCGGACGGGGGC
GACAGCGCCGCCTTATCGAACTGGCCGAAATCGCCGGCCTTGAGCCCGCCAGCGGTGATTACCGCGTTATCGCCGCCACG
TTGCCCGGAGAAGCCCCATGA

Upstream 100 bases:

>100_bases
CTACGCCCATGACCTTGTTGCGGCGGGATAATTTCTGCTTCTTCTAATGATCCTCGTTGCCGGTCCCGAAGGAAGGGATC
GGCCCTGAACGGGGATCATT

Downstream 100 bases:

>100_bases
CCCGATTTGCTCTTCGCACGCGCCGTCATCTGGCGACAGTCGGCTCTATCACCGTCATGACCCTGGCCCTGGCTCCAGCC
GCTTATGCCTCCGGCTCGTC

Product: type II secretion system protein E

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 326; Mature: 325

Protein sequence:

>326_residues
MTVAATRSEAFVRSARMLRTALGPAIAAFLEDPTIVEVMLNPDGRLWVDRLSGGLADSGATLSPADGERIVRLVAHHVGA
EVHANSPRVSTELPETGERFEGLLPPVVAAPAFAIRKPAVAVFTFDDYVVAGIMTAEQAAVLRHAVATRRNILVAGGTST
GKTTLTNALLTEVAKTTDRVVLIEDTRELQCRTQNLVALRTKEGIASLSDLVRSSLRLRPDRIPIGEVRGAEALDLLKAW
GTGHPGGIGTIHAGTALGALRRLEQLIQEAVITVPKALIAETITVVAVLAGRGRQRRLIELAEIAGLEPASGDYRVIAAT
LPGEAP

Sequences:

>Translated_326_residues
MTVAATRSEAFVRSARMLRTALGPAIAAFLEDPTIVEVMLNPDGRLWVDRLSGGLADSGATLSPADGERIVRLVAHHVGA
EVHANSPRVSTELPETGERFEGLLPPVVAAPAFAIRKPAVAVFTFDDYVVAGIMTAEQAAVLRHAVATRRNILVAGGTST
GKTTLTNALLTEVAKTTDRVVLIEDTRELQCRTQNLVALRTKEGIASLSDLVRSSLRLRPDRIPIGEVRGAEALDLLKAW
GTGHPGGIGTIHAGTALGALRRLEQLIQEAVITVPKALIAETITVVAVLAGRGRQRRLIELAEIAGLEPASGDYRVIAAT
LPGEAP
>Mature_325_residues
TVAATRSEAFVRSARMLRTALGPAIAAFLEDPTIVEVMLNPDGRLWVDRLSGGLADSGATLSPADGERIVRLVAHHVGAE
VHANSPRVSTELPETGERFEGLLPPVVAAPAFAIRKPAVAVFTFDDYVVAGIMTAEQAAVLRHAVATRRNILVAGGTSTG
KTTLTNALLTEVAKTTDRVVLIEDTRELQCRTQNLVALRTKEGIASLSDLVRSSLRLRPDRIPIGEVRGAEALDLLKAWG
TGHPGGIGTIHAGTALGALRRLEQLIQEAVITVPKALIAETITVVAVLAGRGRQRRLIELAEIAGLEPASGDYRVIAATL
PGEAP

Specific function: Unknown

COG id: COG4962

COG function: function code U; Flp pilus assembly protein, ATPase CpaF

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014149
- InterPro:   IPR001482 [H]

Pfam domain/function: PF00437 GSPII_E [H]

EC number: NA

Molecular weight: Translated: 34457; Mature: 34326

Theoretical pI: Translated: 7.78; Mature: 7.78

Prosite motif: PS00141 ASP_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVAATRSEAFVRSARMLRTALGPAIAAFLEDPTIVEVMLNPDGRLWVDRLSGGLADSGA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEHHHHCCCCCCCCC
TLSPADGERIVRLVAHHVGAEVHANSPRVSTELPETGERFEGLLPPVVAAPAFAIRKPAV
CCCCCCHHHHHHHHHHHHCCEEECCCCCCCCCCCCCHHHHHCCCCHHHHCCHHHHCCCEE
AVFTFDDYVVAGIMTAEQAAVLRHAVATRRNILVAGGTSTGKTTLTNALLTEVAKTTDRV
EEEEECCHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHCCCCE
VLIEDTRELQCRTQNLVALRTKEGIASLSDLVRSSLRLRPDRIPIGEVRGAEALDLLKAW
EEEECCCHHHHHHCCEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
GTGHPGGIGTIHAGTALGALRRLEQLIQEAVITVPKALIAETITVVAVLAGRGRQRRLIE
CCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
LAEIAGLEPASGDYRVIAATLPGEAP
HHHHCCCCCCCCCEEEEEEECCCCCC
>Mature Secondary Structure 
TVAATRSEAFVRSARMLRTALGPAIAAFLEDPTIVEVMLNPDGRLWVDRLSGGLADSGA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEHHHHCCCCCCCCC
TLSPADGERIVRLVAHHVGAEVHANSPRVSTELPETGERFEGLLPPVVAAPAFAIRKPAV
CCCCCCHHHHHHHHHHHHCCEEECCCCCCCCCCCCCHHHHHCCCCHHHHCCHHHHCCCEE
AVFTFDDYVVAGIMTAEQAAVLRHAVATRRNILVAGGTSTGKTTLTNALLTEVAKTTDRV
EEEEECCHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHCCCCE
VLIEDTRELQCRTQNLVALRTKEGIASLSDLVRSSLRLRPDRIPIGEVRGAEALDLLKAW
EEEECCCHHHHHHCCEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
GTGHPGGIGTIHAGTALGALRRLEQLIQEAVITVPKALIAETITVVAVLAGRGRQRRLIE
CCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
LAEIAGLEPASGDYRVIAATLPGEAP
HHHHCCCCCCCCCEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]