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The map label for this gene is ybdL [H]

Identifier: 83592115

GI number: 83592115

Start: 927523

End: 928698

Strand: Direct

Name: ybdL [H]

Synonym: Rru_A0776

Alternate gene names: 83592115

Gene position: 927523-928698 (Clockwise)

Preceding gene: 83592114

Following gene: 83592116

Centisome position: 21.31

GC content: 69.47

Gene sequence:

>1176_bases
ATGATCCCCCCCGGCAACGCCATTTTCGCCGCCGCCGGGGCTTCGGTCTTCGAGACGATGTCGCAACTGGCCCACGAGCA
CGGGGCGATCAACCTCGGCCAGGGCTTTCCCGAGGCCCTGGAGCCGCCCGAGGTGATCGAGGCGGCGGCGCGGGCCTTGC
GCGATGGCCCCCACCAATACCCCTCGGCCTGGGGCGTTCCGGCGCTGCGTCAGGCGGTGGCCGAGGCCAACGAGCGTTTC
TGGGGGCTGGCGACCGATCCGACCCGCGAGGTTTTGGTGACCTCGGGGGCGACCGAGGCGCTGGCCGCCTGTTTTCTCGG
CCTGCTCAATGCCGGCGACGAGGTGATCGTCTTGCAGCCGGCCTTCGACTGCTATCAAGCCCAGATCCGCCGCGCCGGGG
CGGTGGCGGTGGGTGTGGCTTTGAGCGCCCCCGATTGGACCCTGCCGCGCGCCGCCCTGGCGGCGGCGATCACCCCGCGC
ACCCGGGCGATCGTTCTCAACACGCCGATGAACCCCTGCGGCAAGGTCTTCGATGGCCCAGAGCTTGATTTCATCGCCGA
ACTGCTGATCGCCCATGATCTGGTGGCGATCTGCGACGAGGTTTACGAGCATCTGACCTTTGAGGACCGCGCTCCTCTGC
CTTTGATGACCCGGCCGGGGGTGCGCGCGCGCTGCCTGCGCATCGGATCGGCGGGCAAGACCTTTTCGGTCACCGGCTGG
AAGATCGGCTATGTCAGCGGCGATGCGGCCTTGCTGGCGCCGGTGGCGCGCGCCCATCAGGTCACCACCTTTTCCACGCC
GCCCTTCCTGCAAACCGCCGTCGCCCATGGGCTGCGGCTGGCGGACGGCTATTTCGATGGACTGCGCGCCACCTTGCGGA
CCCGGCGCGACCTTCTGTCGCGCGGGCTGACCGAGGCCGGCTTCGAGGTTCTGGGCTGCCAGGGCACCTATTTCCTGCTG
GCCGGCACCGATGGGGCCGAGGACGACGTGGGCTTCTGCCGGCGGCTGGTTGAAGAGGCCGGGGTGACCGCCATCCCACT
AAGCGGCTTTTTCACCCCCGCCGGCCGGCGGCCGCTGGTCCGCTTCTGCTTTGCCAAACGCCTGGAGACCCTGGAAGGCG
GCATCGCCCGGCTGGTCGCCTGGCGCGGTGGTCAGCGCTGGAGGCGGGCATCATGA

Upstream 100 bases:

>100_bases
TCCTTGATGTCGGCGAGAACCGTCTGAAGGGCCGGTTGCGCTCCCACCCCGATGTGGCGCGGCGCCATTACGCCGATCTT
CTTGGCCCGGATGGCCCGTC

Downstream 100 bases:

>100_bases
GCGGGGTCATCGCCCGCTCCCGGCCTCCGGCAAGCGGGCTGGCGGCGGCCCTGGCGGAGCTGTCGACGCTGCTTGGCGCG
CGGCTGAGCACGGCTTTGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 391; Mature: 391

Protein sequence:

>391_residues
MIPPGNAIFAAAGASVFETMSQLAHEHGAINLGQGFPEALEPPEVIEAAARALRDGPHQYPSAWGVPALRQAVAEANERF
WGLATDPTREVLVTSGATEALAACFLGLLNAGDEVIVLQPAFDCYQAQIRRAGAVAVGVALSAPDWTLPRAALAAAITPR
TRAIVLNTPMNPCGKVFDGPELDFIAELLIAHDLVAICDEVYEHLTFEDRAPLPLMTRPGVRARCLRIGSAGKTFSVTGW
KIGYVSGDAALLAPVARAHQVTTFSTPPFLQTAVAHGLRLADGYFDGLRATLRTRRDLLSRGLTEAGFEVLGCQGTYFLL
AGTDGAEDDVGFCRRLVEEAGVTAIPLSGFFTPAGRRPLVRFCFAKRLETLEGGIARLVAWRGGQRWRRAS

Sequences:

>Translated_391_residues
MIPPGNAIFAAAGASVFETMSQLAHEHGAINLGQGFPEALEPPEVIEAAARALRDGPHQYPSAWGVPALRQAVAEANERF
WGLATDPTREVLVTSGATEALAACFLGLLNAGDEVIVLQPAFDCYQAQIRRAGAVAVGVALSAPDWTLPRAALAAAITPR
TRAIVLNTPMNPCGKVFDGPELDFIAELLIAHDLVAICDEVYEHLTFEDRAPLPLMTRPGVRARCLRIGSAGKTFSVTGW
KIGYVSGDAALLAPVARAHQVTTFSTPPFLQTAVAHGLRLADGYFDGLRATLRTRRDLLSRGLTEAGFEVLGCQGTYFLL
AGTDGAEDDVGFCRRLVEEAGVTAIPLSGFFTPAGRRPLVRFCFAKRLETLEGGIARLVAWRGGQRWRRAS
>Mature_391_residues
MIPPGNAIFAAAGASVFETMSQLAHEHGAINLGQGFPEALEPPEVIEAAARALRDGPHQYPSAWGVPALRQAVAEANERF
WGLATDPTREVLVTSGATEALAACFLGLLNAGDEVIVLQPAFDCYQAQIRRAGAVAVGVALSAPDWTLPRAALAAAITPR
TRAIVLNTPMNPCGKVFDGPELDFIAELLIAHDLVAICDEVYEHLTFEDRAPLPLMTRPGVRARCLRIGSAGKTFSVTGW
KIGYVSGDAALLAPVARAHQVTTFSTPPFLQTAVAHGLRLADGYFDGLRATLRTRRDLLSRGLTEAGFEVLGCQGTYFLL
AGTDGAEDDVGFCRRLVEEAGVTAIPLSGFFTPAGRRPLVRFCFAKRLETLEGGIARLVAWRGGQRWRRAS

Specific function: Shows aminotransferase activity with methionine and histidine as substrates, and to a lesser extent also with phenylalanine [H]

COG id: COG0436

COG function: function code E; Aspartate/tyrosine/aromatic aminotransferase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

Organism=Homo sapiens, GI56713254, Length=400, Percent_Identity=34.75, Blast_Score=234, Evalue=7e-62,
Organism=Homo sapiens, GI56713256, Length=400, Percent_Identity=34.75, Blast_Score=234, Evalue=8e-62,
Organism=Homo sapiens, GI95147551, Length=397, Percent_Identity=35.7682619647355, Blast_Score=233, Evalue=2e-61,
Organism=Homo sapiens, GI169881279, Length=397, Percent_Identity=35.7682619647355, Blast_Score=233, Evalue=2e-61,
Organism=Homo sapiens, GI169881281, Length=395, Percent_Identity=31.1392405063291, Blast_Score=181, Evalue=1e-45,
Organism=Homo sapiens, GI4507369, Length=337, Percent_Identity=25.2225519287834, Blast_Score=91, Evalue=2e-18,
Organism=Escherichia coli, GI1786816, Length=368, Percent_Identity=38.5869565217391, Blast_Score=265, Evalue=5e-72,
Organism=Escherichia coli, GI1788722, Length=328, Percent_Identity=26.5243902439024, Blast_Score=121, Evalue=9e-29,
Organism=Escherichia coli, GI1788627, Length=226, Percent_Identity=26.5486725663717, Blast_Score=80, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI71994476, Length=402, Percent_Identity=35.3233830845771, Blast_Score=238, Evalue=3e-63,
Organism=Caenorhabditis elegans, GI71994472, Length=402, Percent_Identity=35.3233830845771, Blast_Score=238, Evalue=3e-63,
Organism=Caenorhabditis elegans, GI17567369, Length=400, Percent_Identity=33.25, Blast_Score=217, Evalue=9e-57,
Organism=Caenorhabditis elegans, GI17567663, Length=363, Percent_Identity=24.7933884297521, Blast_Score=89, Evalue=3e-18,
Organism=Saccharomyces cerevisiae, GI6322401, Length=383, Percent_Identity=34.4647519582245, Blast_Score=203, Evalue=4e-53,
Organism=Drosophila melanogaster, GI28573069, Length=402, Percent_Identity=33.5820895522388, Blast_Score=234, Evalue=6e-62,
Organism=Drosophila melanogaster, GI24646114, Length=402, Percent_Identity=33.5820895522388, Blast_Score=234, Evalue=6e-62,
Organism=Drosophila melanogaster, GI28573067, Length=402, Percent_Identity=33.5820895522388, Blast_Score=234, Evalue=6e-62,
Organism=Drosophila melanogaster, GI28573065, Length=402, Percent_Identity=33.5820895522388, Blast_Score=234, Evalue=6e-62,
Organism=Drosophila melanogaster, GI18859735, Length=336, Percent_Identity=25.5952380952381, Blast_Score=97, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00155 Aminotran_1_2 [H]

EC number: 2.6.1.- [C]

Molecular weight: Translated: 41799; Mature: 41799

Theoretical pI: Translated: 6.62; Mature: 6.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPPGNAIFAAAGASVFETMSQLAHEHGAINLGQGFPEALEPPEVIEAAARALRDGPHQY
CCCCCCEEEECCCHHHHHHHHHHHHHCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCCCC
PSAWGVPALRQAVAEANERFWGLATDPTREVLVTSGATEALAACFLGLLNAGDEVIVLQP
CCCCCCHHHHHHHHHHHHCEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCEEEECC
AFDCYQAQIRRAGAVAVGVALSAPDWTLPRAALAAAITPRTRAIVLNTPMNPCGKVFDGP
CHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHCCCCCEEEEEECCCCHHHCCCCCC
ELDFIAELLIAHDLVAICDEVYEHLTFEDRAPLPLMTRPGVRARCLRIGSAGKTFSVTGW
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHEEECCCCCEEEECCE
KIGYVSGDAALLAPVARAHQVTTFSTPPFLQTAVAHGLRLADGYFDGLRATLRTRRDLLS
EEEEECCCHHHHHHHHHHHEEEECCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
RGLTEAGFEVLGCQGTYFLLAGTDGAEDDVGFCRRLVEEAGVTAIPLSGFFTPAGRRPLV
CCCHHHCCEEEECCCEEEEEECCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHH
RFCFAKRLETLEGGIARLVAWRGGQRWRRAS
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MIPPGNAIFAAAGASVFETMSQLAHEHGAINLGQGFPEALEPPEVIEAAARALRDGPHQY
CCCCCCEEEECCCHHHHHHHHHHHHHCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCCCC
PSAWGVPALRQAVAEANERFWGLATDPTREVLVTSGATEALAACFLGLLNAGDEVIVLQP
CCCCCCHHHHHHHHHHHHCEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCEEEECC
AFDCYQAQIRRAGAVAVGVALSAPDWTLPRAALAAAITPRTRAIVLNTPMNPCGKVFDGP
CHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHCCCCCEEEEEECCCCHHHCCCCCC
ELDFIAELLIAHDLVAICDEVYEHLTFEDRAPLPLMTRPGVRARCLRIGSAGKTFSVTGW
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHEEECCCCCEEEECCE
KIGYVSGDAALLAPVARAHQVTTFSTPPFLQTAVAHGLRLADGYFDGLRATLRTRRDLLS
EEEEECCCHHHHHHHHHHHEEEECCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
RGLTEAGFEVLGCQGTYFLLAGTDGAEDDVGFCRRLVEEAGVTAIPLSGFFTPAGRRPLV
CCCHHHCCEEEECCCEEEEEECCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHH
RFCFAKRLETLEGGIARLVAWRGGQRWRRAS
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: Pyridoxal Phosphate. [C]

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]