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The map label for this gene is yebA [H]

Identifier: 83592109

GI number: 83592109

Start: 908584

End: 910185

Strand: Reverse

Name: yebA [H]

Synonym: Rru_A0770

Alternate gene names: 83592109

Gene position: 910185-908584 (Counterclockwise)

Preceding gene: 83592111

Following gene: 83592108

Centisome position: 20.91

GC content: 66.17

Gene sequence:

>1602_bases
ATGCCGCCGACCGGAAGGCCGGTCCGATTTACCTTAGTCGGATCAGCCATCGGTGCCGCCCTTGGCGCCACTCTGTATTT
TAACCCGCCCGTTTCGGCGACACCGCTTTTCGCGCTGTCGCCCAAGCCGGCCGAGATCGGTAGCGCAGCGTCTGCCTTTT
CTCCCGCCTTCGCCGCGACGCCGCCTTTCGCGCCGTCGCTGGCCGACCGCGTTCCCGAACCCGCCCTCCCCGCCCTGGCG
ATGACCGGGGCCAACCACCCCTTCCGCGGTCTGTCATCCCACGACAGCAGCTATCCCCGGCGCTCGCTCGATGCCACCGC
TCTCGACTGGCAGGGATCGGGCGACAGCCTGACCGCCACCGTCGGCGCCGAGTTCCTGGCCGAGCTCGACATCATGGTGC
CGCCCGCCCCCGGGCTGGATGAGGATCTGGCCGCCGCCCTGGCCGCCTTGCCGGCGGGGAAAGCGGGCGCGGGCGACTCC
TCGGCGGTCGATCTGACCATCACCGTGTCGCGCGGCGATACCTTGATGGAGCTGCTGAGCGAGCAGGACGTGCCCCTGAC
CGAAGCCCATGACGCCATTGAGGCCCTGCGCGCAAGCTTCGATCCGCGCGAGATCCGCCCCGGCCATGAATTGACCCTGT
CGTTCGAGCCGCGCGATGAGGGGGCGCCGCTGTTTCGCGGTCTGAGCTTCGAGCCGACCATCGGCACCACCATCACCCTC
ACCCGCACCGCCGAGAACGGCTTCGCCTCGACCAAGCAGGAAGCCAAGCTGGTCCGCAAGGTGGCGCGCTATGACGGTGA
AATCTCGAGCAGCCTGTTTGAGGCCGGCATCAAGGCCGGTATCGAGCAGACCGCCCTGTCCGAGCTGATCCGCATCTATT
CCTATGACGTCGACTTCCAGCGCGATCTGCAAAAAGGCGATCGCTTCTCGATGTTCTACGAGCAGTATTACACCGATGAC
GGCCGTCTGGTGCGGGCGGGCAATGTGCTGTTCGCCTCGATGACGCTGTCGGGCACCGTCATGCCGCTCTACCGCTTCGA
AGATACCGAGGGCTTCGTCGATTACTACAACGGCAAGGGCGAGGGCATCCGCAAGGCCCTGTTGCGCACGCCGATCAACG
GCGCCCGCCTGTCTTCGGGCTTTGGCCTGCGCCGCCATCCGGTTCTCGGCTTTTCGAAGATGCATAAGGGTGTCGACTTC
GCCGCCCCGCCCGGCACCCCGATCTATGCGGCGGGCGACGGCGTGGTCGAGAAGGCCGGACCCTTCAGCAGCTACGGCAA
TTACGTGCGGCTCCGCCATACCGAGGATTACAAGACCGCCTATGCCCATATGAAGGGCTTCGCCGCCGGGATCACGGCGG
GCAAGAAGGTCCGCCAGGGTCAGGTGATCGGCTATGTCGGCACCACCGGCCGCTCGACCGGCCCCCATCTGCATTATGAA
ATCCTGCGCCAGAACGCCCAGGTCAATCCGATGGGCGTGCGCTTCCCCTCGGGCAAAAGCCTGCGCGGCAAGGAACTGGC
CGCCTTCCAGAAAGAGCGGGCCCGGGTCGATATGGCCTTCCAGGCGACTCCGTCGGGGACCAAGCTGGCCAGCGCCAATT
AG

Upstream 100 bases:

>100_bases
GGCCTCAAAAACCGGAACACCCGGTGCGGTCGGAAGCCCAGCGGACGGGATGACCCCCGACGATGTCACCGACCCCGCGA
GAACTTTGGGAGCTCCTGCC

Downstream 100 bases:

>100_bases
AGCCGATCCCCGCGCGCGCCCAAGCGGAGCGCGCCGGGGATTTGCCTGACGATCAAGACCGTGAAACGGCGGACGGGGGG
CGGGTTTCGCGCTCGCCGCC

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 533; Mature: 532

Protein sequence:

>533_residues
MPPTGRPVRFTLVGSAIGAALGATLYFNPPVSATPLFALSPKPAEIGSAASAFSPAFAATPPFAPSLADRVPEPALPALA
MTGANHPFRGLSSHDSSYPRRSLDATALDWQGSGDSLTATVGAEFLAELDIMVPPAPGLDEDLAAALAALPAGKAGAGDS
SAVDLTITVSRGDTLMELLSEQDVPLTEAHDAIEALRASFDPREIRPGHELTLSFEPRDEGAPLFRGLSFEPTIGTTITL
TRTAENGFASTKQEAKLVRKVARYDGEISSSLFEAGIKAGIEQTALSELIRIYSYDVDFQRDLQKGDRFSMFYEQYYTDD
GRLVRAGNVLFASMTLSGTVMPLYRFEDTEGFVDYYNGKGEGIRKALLRTPINGARLSSGFGLRRHPVLGFSKMHKGVDF
AAPPGTPIYAAGDGVVEKAGPFSSYGNYVRLRHTEDYKTAYAHMKGFAAGITAGKKVRQGQVIGYVGTTGRSTGPHLHYE
ILRQNAQVNPMGVRFPSGKSLRGKELAAFQKERARVDMAFQATPSGTKLASAN

Sequences:

>Translated_533_residues
MPPTGRPVRFTLVGSAIGAALGATLYFNPPVSATPLFALSPKPAEIGSAASAFSPAFAATPPFAPSLADRVPEPALPALA
MTGANHPFRGLSSHDSSYPRRSLDATALDWQGSGDSLTATVGAEFLAELDIMVPPAPGLDEDLAAALAALPAGKAGAGDS
SAVDLTITVSRGDTLMELLSEQDVPLTEAHDAIEALRASFDPREIRPGHELTLSFEPRDEGAPLFRGLSFEPTIGTTITL
TRTAENGFASTKQEAKLVRKVARYDGEISSSLFEAGIKAGIEQTALSELIRIYSYDVDFQRDLQKGDRFSMFYEQYYTDD
GRLVRAGNVLFASMTLSGTVMPLYRFEDTEGFVDYYNGKGEGIRKALLRTPINGARLSSGFGLRRHPVLGFSKMHKGVDF
AAPPGTPIYAAGDGVVEKAGPFSSYGNYVRLRHTEDYKTAYAHMKGFAAGITAGKKVRQGQVIGYVGTTGRSTGPHLHYE
ILRQNAQVNPMGVRFPSGKSLRGKELAAFQKERARVDMAFQATPSGTKLASAN
>Mature_532_residues
PPTGRPVRFTLVGSAIGAALGATLYFNPPVSATPLFALSPKPAEIGSAASAFSPAFAATPPFAPSLADRVPEPALPALAM
TGANHPFRGLSSHDSSYPRRSLDATALDWQGSGDSLTATVGAEFLAELDIMVPPAPGLDEDLAAALAALPAGKAGAGDSS
AVDLTITVSRGDTLMELLSEQDVPLTEAHDAIEALRASFDPREIRPGHELTLSFEPRDEGAPLFRGLSFEPTIGTTITLT
RTAENGFASTKQEAKLVRKVARYDGEISSSLFEAGIKAGIEQTALSELIRIYSYDVDFQRDLQKGDRFSMFYEQYYTDDG
RLVRAGNVLFASMTLSGTVMPLYRFEDTEGFVDYYNGKGEGIRKALLRTPINGARLSSGFGLRRHPVLGFSKMHKGVDFA
APPGTPIYAAGDGVVEKAGPFSSYGNYVRLRHTEDYKTAYAHMKGFAAGITAGKKVRQGQVIGYVGTTGRSTGPHLHYEI
LRQNAQVNPMGVRFPSGKSLRGKELAAFQKERARVDMAFQATPSGTKLASAN

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=346, Percent_Identity=32.3699421965318, Blast_Score=157, Evalue=2e-39,
Organism=Escherichia coli, GI87082174, Length=105, Percent_Identity=39.0476190476191, Blast_Score=73, Evalue=5e-14,
Organism=Escherichia coli, GI1789099, Length=98, Percent_Identity=37.7551020408163, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 56923; Mature: 56792

Theoretical pI: Translated: 7.10; Mature: 7.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPPTGRPVRFTLVGSAIGAALGATLYFNPPVSATPLFALSPKPAEIGSAASAFSPAFAAT
CCCCCCCEEEEEECHHHHHHHCCEEEECCCCCCCEEEEECCCCHHHCCHHHHCCCCCCCC
PPFAPSLADRVPEPALPALAMTGANHPFRGLSSHDSSYPRRSLDATALDWQGSGDSLTAT
CCCCCHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEH
VGAEFLAELDIMVPPAPGLDEDLAAALAALPAGKAGAGDSSAVDLTITVSRGDTLMELLS
HHHHHHHHCCEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCHHHHHHHC
EQDVPLTEAHDAIEALRASFDPREIRPGHELTLSFEPRDEGAPLFRGLSFEPTIGTTITL
CCCCCHHHHHHHHHHHHHCCCHHHCCCCCEEEEEECCCCCCCHHHCCCCCCCCCCCEEEE
TRTAENGFASTKQEAKLVRKVARYDGEISSSLFEAGIKAGIEQTALSELIRIYSYDVDFQ
EEECCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHH
RDLQKGDRFSMFYEQYYTDDGRLVRAGNVLFASMTLSGTVMPLYRFEDTEGFVDYYNGKG
HHHCCCCHHHHHHHHHCCCCCCEEEECCEEEEEEEECCEEEEEEEECCCCCCEEEECCCC
EGIRKALLRTPINGARLSSGFGLRRHPVLGFSKMHKGVDFAAPPGTPIYAAGDGVVEKAG
HHHHHHHHHCCCCCCEECCCCCCCCCCCCCHHHHHCCCCCCCCCCCEEEECCCCCCCCCC
PFSSYGNYVRLRHTEDYKTAYAHMKGFAAGITAGKKVRQGQVIGYVGTTGRSTGPHLHYE
CCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHH
ILRQNAQVNPMGVRFPSGKSLRGKELAAFQKERARVDMAFQATPSGTKLASAN
HHHCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHEEEEEEECCCCCEECCCC
>Mature Secondary Structure 
PPTGRPVRFTLVGSAIGAALGATLYFNPPVSATPLFALSPKPAEIGSAASAFSPAFAAT
CCCCCCEEEEEECHHHHHHHCCEEEECCCCCCCEEEEECCCCHHHCCHHHHCCCCCCCC
PPFAPSLADRVPEPALPALAMTGANHPFRGLSSHDSSYPRRSLDATALDWQGSGDSLTAT
CCCCCHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEH
VGAEFLAELDIMVPPAPGLDEDLAAALAALPAGKAGAGDSSAVDLTITVSRGDTLMELLS
HHHHHHHHCCEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCHHHHHHHC
EQDVPLTEAHDAIEALRASFDPREIRPGHELTLSFEPRDEGAPLFRGLSFEPTIGTTITL
CCCCCHHHHHHHHHHHHHCCCHHHCCCCCEEEEEECCCCCCCHHHCCCCCCCCCCCEEEE
TRTAENGFASTKQEAKLVRKVARYDGEISSSLFEAGIKAGIEQTALSELIRIYSYDVDFQ
EEECCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHH
RDLQKGDRFSMFYEQYYTDDGRLVRAGNVLFASMTLSGTVMPLYRFEDTEGFVDYYNGKG
HHHCCCCHHHHHHHHHCCCCCCEEEECCEEEEEEEECCEEEEEEEECCCCCCEEEECCCC
EGIRKALLRTPINGARLSSGFGLRRHPVLGFSKMHKGVDFAAPPGTPIYAAGDGVVEKAG
HHHHHHHHHCCCCCCEECCCCCCCCCCCCCHHHHHCCCCCCCCCCCEEEECCCCCCCCCC
PFSSYGNYVRLRHTEDYKTAYAHMKGFAAGITAGKKVRQGQVIGYVGTTGRSTGPHLHYE
CCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHH
ILRQNAQVNPMGVRFPSGKSLRGKELAAFQKERARVDMAFQATPSGTKLASAN
HHHCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHEEEEEEECCCCCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]