BacMap

Definition	Rhodospirillum rubrum ATCC 11170 chromosome, complete genome.
Accession	NC_007643
Length	4,352,825

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The map label for this gene is ucpA [C]

Identifier: 83592068

GI number: 83592068

Start: 856840

End: 857619

Strand: Reverse

Name: ucpA [C]

Synonym: Rru_A0729

Alternate gene names: 83592068

Gene position: 857619-856840 (Counterclockwise)

Preceding gene: 83592069

Following gene: 83592067

Centisome position: 19.7

GC content: 67.56

Gene sequence:

>780_bases
ATGAGCGAAGCGCCGCGTCCGGTCACCTGGATCACCGGGGCGGGGAAGGGCATCGGCCGCGCGCTCGCCCTGCATCTGGC
CGCCGAGGGCGCCACGGTGGCCGCCAGCGCCCGCACCCTCGGCGATCTCGATACCCTGGTCGCCGAGGCCGACCGCTCAA
AAGGTGGATCGATCCACCCCTTCGCCCTTGATACCACCCAGCCCGAGGCGGTGGCCGCCGGGGTCGAGGCCATCGAAGGC
GGCCTGGGGCCGATCACCCAGGCCGTGCTCAACGCCGGCACCGACCAGTCGATGGGGGTGGCGGATTTCTCGACCCAAAC
CCTGCGCGCGGTGATCGAGGTCAATCTTCTGGGCACCGCCTCCTGTCTTGAAGCGGTGCTGCCACCGATGCGACGGCGCA
AGAGCGGGCGCATCGCCGTTGTCAGCTCGGTGGCCGGCTATCGCGGCCTGCCGACGGCGGCTGCCTATGGGCCAACCAAG
GCGGCGCTGACCAATATGATGGAATCCCTGAAGATCGAGGCGGCCCAGGCCGGCATCCTCCTGCAGGTGATCAATCCGGG
ATTCGTGCGCACGCCGCTGACCGACCGCAACCCCTTTCCCATGCCCTTTCTGATCGAGGCCGACGAGGCGGCGGCGCGCA
TCGCCGATGGCTTGCGAAGCAAGGCCTTCGAGATCACCTTCCCCAAACGCTTCACCTATGGGCTGAAGCTGGCCCGCCTG
CTGCCCTATGCCCTTTACTTCCCTTTGATCGCCAAGATAACCGGGAGCCCCAAGCGATGA

Upstream 100 bases:

>100_bases
TTGACTATATCTGCGAAAGCTGCGGCAGCGGCGAGGCCATGGCGGCGCGTCCCGCCCCCGGGGCATCTGGCGATAGGACC
GCCCCCGCCGGGGCGCGGCC

Downstream 100 bases:

>100_bases
GCCAAGACACCGCCTTGCAGCGGGCCGCCGCCCTGGAAGCCGGGGCCAACGCTTATTTGGCCTTTTATTCCTCGATGACG
CCGCTGACCCTGGGCCAGCT

Product: short-chain dehydrogenase/reductase sDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 258

Protein sequence:

>259_residues
MSEAPRPVTWITGAGKGIGRALALHLAAEGATVAASARTLGDLDTLVAEADRSKGGSIHPFALDTTQPEAVAAGVEAIEG
GLGPITQAVLNAGTDQSMGVADFSTQTLRAVIEVNLLGTASCLEAVLPPMRRRKSGRIAVVSSVAGYRGLPTAAAYGPTK
AALTNMMESLKIEAAQAGILLQVINPGFVRTPLTDRNPFPMPFLIEADEAAARIADGLRSKAFEITFPKRFTYGLKLARL
LPYALYFPLIAKITGSPKR

Sequences:

>Translated_259_residues
MSEAPRPVTWITGAGKGIGRALALHLAAEGATVAASARTLGDLDTLVAEADRSKGGSIHPFALDTTQPEAVAAGVEAIEG
GLGPITQAVLNAGTDQSMGVADFSTQTLRAVIEVNLLGTASCLEAVLPPMRRRKSGRIAVVSSVAGYRGLPTAAAYGPTK
AALTNMMESLKIEAAQAGILLQVINPGFVRTPLTDRNPFPMPFLIEADEAAARIADGLRSKAFEITFPKRFTYGLKLARL
LPYALYFPLIAKITGSPKR
>Mature_258_residues
SEAPRPVTWITGAGKGIGRALALHLAAEGATVAASARTLGDLDTLVAEADRSKGGSIHPFALDTTQPEAVAAGVEAIEGG
LGPITQAVLNAGTDQSMGVADFSTQTLRAVIEVNLLGTASCLEAVLPPMRRRKSGRIAVVSSVAGYRGLPTAAAYGPTKA
ALTNMMESLKIEAAQAGILLQVINPGFVRTPLTDRNPFPMPFLIEADEAAARIADGLRSKAFEITFPKRFTYGLKLARLL
PYALYFPLIAKITGSPKR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI7657478, Length=194, Percent_Identity=35.0515463917526, Blast_Score=96, Evalue=2e-20,
Organism=Homo sapiens, GI7706318, Length=197, Percent_Identity=33.502538071066, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI210032110, Length=243, Percent_Identity=27.5720164609054, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI142976729, Length=261, Percent_Identity=27.5862068965517, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI223718074, Length=196, Percent_Identity=34.6938775510204, Blast_Score=88, Evalue=6e-18,
Organism=Homo sapiens, GI20149619, Length=192, Percent_Identity=30.2083333333333, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI109715829, Length=200, Percent_Identity=31.5, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI32455239, Length=166, Percent_Identity=35.5421686746988, Blast_Score=82, Evalue=5e-16,
Organism=Homo sapiens, GI5031765, Length=166, Percent_Identity=35.5421686746988, Blast_Score=82, Evalue=5e-16,
Organism=Homo sapiens, GI40807363, Length=244, Percent_Identity=26.2295081967213, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI40254992, Length=195, Percent_Identity=28.7179487179487, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI210032112, Length=240, Percent_Identity=26.6666666666667, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI150247226, Length=230, Percent_Identity=27.8260869565217, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI4503817, Length=202, Percent_Identity=27.7227722772277, Blast_Score=71, Evalue=8e-13,
Organism=Homo sapiens, GI310128830, Length=246, Percent_Identity=24.390243902439, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI310115468, Length=246, Percent_Identity=24.390243902439, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI32483357, Length=191, Percent_Identity=28.2722513089005, Blast_Score=69, Evalue=6e-12,
Organism=Homo sapiens, GI119392083, Length=193, Percent_Identity=29.5336787564767, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI4557649, Length=188, Percent_Identity=27.1276595744681, Blast_Score=68, Evalue=8e-12,
Organism=Homo sapiens, GI15277342, Length=201, Percent_Identity=31.3432835820896, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI7705925, Length=184, Percent_Identity=31.5217391304348, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI19923817, Length=193, Percent_Identity=27.979274611399, Blast_Score=65, Evalue=8e-11,
Organism=Escherichia coli, GI87082100, Length=189, Percent_Identity=35.4497354497354, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1787335, Length=188, Percent_Identity=30.8510638297872, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1790717, Length=184, Percent_Identity=29.3478260869565, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI2367175, Length=235, Percent_Identity=28.936170212766, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1786812, Length=187, Percent_Identity=28.3422459893048, Blast_Score=64, Evalue=7e-12,
Organism=Escherichia coli, GI1786701, Length=186, Percent_Identity=29.5698924731183, Blast_Score=64, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17567345, Length=231, Percent_Identity=28.1385281385281, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17508895, Length=247, Percent_Identity=26.7206477732794, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI32563809, Length=202, Percent_Identity=29.2079207920792, Blast_Score=78, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI17507613, Length=202, Percent_Identity=29.2079207920792, Blast_Score=77, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI115534660, Length=224, Percent_Identity=29.4642857142857, Blast_Score=77, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI17532725, Length=191, Percent_Identity=31.413612565445, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17536651, Length=180, Percent_Identity=27.2222222222222, Blast_Score=66, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=196, Percent_Identity=30.1020408163265, Blast_Score=74, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6322067, Length=205, Percent_Identity=27.8048780487805, Blast_Score=65, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6322861, Length=197, Percent_Identity=27.9187817258883, Blast_Score=64, Evalue=3e-11,
Organism=Drosophila melanogaster, GI281364892, Length=246, Percent_Identity=30.0813008130081, Blast_Score=106, Evalue=1e-23,
Organism=Drosophila melanogaster, GI24640492, Length=243, Percent_Identity=30.8641975308642, Blast_Score=94, Evalue=1e-19,
Organism=Drosophila melanogaster, GI23397609, Length=192, Percent_Identity=35.4166666666667, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI21358495, Length=198, Percent_Identity=29.2929292929293, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI28571387, Length=222, Percent_Identity=31.0810810810811, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI21355319, Length=189, Percent_Identity=28.5714285714286, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI116007236, Length=222, Percent_Identity=27.4774774774775, Blast_Score=79, Evalue=4e-15,
Organism=Drosophila melanogaster, GI24641232, Length=204, Percent_Identity=27.9411764705882, Blast_Score=78, Evalue=6e-15,
Organism=Drosophila melanogaster, GI21356301, Length=200, Percent_Identity=30.5, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24648693, Length=216, Percent_Identity=29.1666666666667, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI21355889, Length=216, Percent_Identity=29.1666666666667, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24649181, Length=242, Percent_Identity=29.7520661157025, Blast_Score=76, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24641388, Length=208, Percent_Identity=30.2884615384615, Blast_Score=76, Evalue=3e-14,
Organism=Drosophila melanogaster, GI21355631, Length=253, Percent_Identity=26.4822134387352, Blast_Score=74, Evalue=7e-14,
Organism=Drosophila melanogaster, GI24643142, Length=191, Percent_Identity=32.4607329842932, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI116007238, Length=181, Percent_Identity=27.0718232044199, Blast_Score=71, Evalue=8e-13,
Organism=Drosophila melanogaster, GI24663911, Length=204, Percent_Identity=28.4313725490196, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24648944, Length=191, Percent_Identity=29.8429319371728, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI18859837, Length=191, Percent_Identity=29.3193717277487, Blast_Score=68, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24640442, Length=194, Percent_Identity=27.8350515463918, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24580925, Length=173, Percent_Identity=28.9017341040462, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24581726, Length=212, Percent_Identity=24.0566037735849, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI281364494, Length=222, Percent_Identity=28.8288288288288, Blast_Score=65, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 27110; Mature: 26979

Theoretical pI: Translated: 9.90; Mature: 9.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEAPRPVTWITGAGKGIGRALALHLAAEGATVAASARTLGDLDTLVAEADRSKGGSIHP
CCCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCCC
FALDTTQPEAVAAGVEAIEGGLGPITQAVLNAGTDQSMGVADFSTQTLRAVIEVNLLGTA
EEECCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCHH
SCLEAVLPPMRRRKSGRIAVVSSVAGYRGLPTAAAYGPTKAALTNMMESLKIEAAQAGIL
HHHHHHCCHHHHCCCCCEEEEEECCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHCCEE
LQVINPGFVRTPLTDRNPFPMPFLIEADEAAARIADGLRSKAFEITFPKRFTYGLKLARL
EEEECCCEEECCCCCCCCCCCCEEEECHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHHH
LPYALYFPLIAKITGSPKR
HHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SEAPRPVTWITGAGKGIGRALALHLAAEGATVAASARTLGDLDTLVAEADRSKGGSIHP
CCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCCC
FALDTTQPEAVAAGVEAIEGGLGPITQAVLNAGTDQSMGVADFSTQTLRAVIEVNLLGTA
EEECCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCHH
SCLEAVLPPMRRRKSGRIAVVSSVAGYRGLPTAAAYGPTKAALTNMMESLKIEAAQAGIL
HHHHHHCCHHHHCCCCCEEEEEECCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHCCEE
LQVINPGFVRTPLTDRNPFPMPFLIEADEAAARIADGLRSKAFEITFPKRFTYGLKLARL
EEEECCCEEECCCCCCCCCCCCEEEECHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHHH
LPYALYFPLIAKITGSPKR
HHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1730672 [H]