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The map label for this gene is yhcS [C]

Identifier: 83591801

GI number: 83591801

Start: 540748

End: 541641

Strand: Direct

Name: yhcS [C]

Synonym: Rru_A0461

Alternate gene names: 83591801

Gene position: 540748-541641 (Clockwise)

Preceding gene: 83591799

Following gene: 83591802

Centisome position: 12.42

GC content: 66.44

Gene sequence:

>894_bases
ATGGACCGCTTGACCAGCATGGGCGTTTTCATCAAGGCCGCCGATCTTGGGTCTTTCGCCGCGGCGGCCGAGGCTTTGGC
GATGTCGCCGCAGATGGTGGCCAAGCATGTGGTGTTTCTGGAAGACCGCCTGGGCACCGCCCTGCTCAACCGCACGACGC
GCCGCCAAAGCCTGACCGATGTTGGGCGGGCCTATTACGATCGCTGCAAGCTGGTGCTGTCGGAAGCCGAGGCCGCCGAG
GCCCTGGCCCATGACATGCGCAGCCGGCCCCAGGGCGTTTTGCGGGTGAACGCGCCGATGACCTTTGGCGCCTTCACCTT
GGCGCCCTTCGTCACCCGCTATTTGACGCGTTATCCCGAGATGCGGGTCGACCTTACCCTGAACGATCGTTTCGTCGATC
CGCTGGAAGACGGGGTCGAGGTGATGGTGCGTATTGGCGAGATCGCCGATACGGCGCTGATCGCCCATCCCTTGGCGCCC
TATCGGCTGATCGCTTGCGCCGCGCCTAGCTATCTGGCGGCGCGCGGCACGCCGAAGGAGCCGGCCGATCTGCAAGGCCA
CGACTGTCTGGTCTATGCCTATTGGTCGCCCAGCATTCCCTGCCCCTGGGTCTTCACCCGCGAGGGTCAAAGCCACGAGG
TGCGGGCCAACGGCCGGTTTCGCAGCACCGATTGGAAGGCTTTGCTGCATGCGGCGACGGCGGGGTTTGGCATCACCCTG
GGGCCGGAAAGCGTTCTGGCCGACGAGGTGGCCGCCGGGCGGCTGGTGCGGGTGCTGCCCGACTACCAGGGTCCGGCCCG
GCCGATGCATGTGCTTTATCCCGCCGGCCGCCGACCAACCGTCAAGCTGCGCAGCTTCGTGGACGCCGTGGTCGAGGAAT
TCGGCCCGCGCTAG

Upstream 100 bases:

>100_bases
CTCTCTCCGTGTGAGGACTGACCGGAGAGAGGATAATTCGCCATCGTATGGTGATAAATTCCCATGATATCTTGACACTC
CCAACCAACAGGAGGGAATC

Downstream 100 bases:

>100_bases
GAGAGGGAAACGGCGGGTTATCCCGGTTGATCGGCAGGCGGGGAACTTCGCGCTCGTGGCGGCGTTTCTTGGGCAATCCA
ACGTCGTGGGTCGGTCTGGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MDRLTSMGVFIKAADLGSFAAAAEALAMSPQMVAKHVVFLEDRLGTALLNRTTRRQSLTDVGRAYYDRCKLVLSEAEAAE
ALAHDMRSRPQGVLRVNAPMTFGAFTLAPFVTRYLTRYPEMRVDLTLNDRFVDPLEDGVEVMVRIGEIADTALIAHPLAP
YRLIACAAPSYLAARGTPKEPADLQGHDCLVYAYWSPSIPCPWVFTREGQSHEVRANGRFRSTDWKALLHAATAGFGITL
GPESVLADEVAAGRLVRVLPDYQGPARPMHVLYPAGRRPTVKLRSFVDAVVEEFGPR

Sequences:

>Translated_297_residues
MDRLTSMGVFIKAADLGSFAAAAEALAMSPQMVAKHVVFLEDRLGTALLNRTTRRQSLTDVGRAYYDRCKLVLSEAEAAE
ALAHDMRSRPQGVLRVNAPMTFGAFTLAPFVTRYLTRYPEMRVDLTLNDRFVDPLEDGVEVMVRIGEIADTALIAHPLAP
YRLIACAAPSYLAARGTPKEPADLQGHDCLVYAYWSPSIPCPWVFTREGQSHEVRANGRFRSTDWKALLHAATAGFGITL
GPESVLADEVAAGRLVRVLPDYQGPARPMHVLYPAGRRPTVKLRSFVDAVVEEFGPR
>Mature_297_residues
MDRLTSMGVFIKAADLGSFAAAAEALAMSPQMVAKHVVFLEDRLGTALLNRTTRRQSLTDVGRAYYDRCKLVLSEAEAAE
ALAHDMRSRPQGVLRVNAPMTFGAFTLAPFVTRYLTRYPEMRVDLTLNDRFVDPLEDGVEVMVRIGEIADTALIAHPLAP
YRLIACAAPSYLAARGTPKEPADLQGHDCLVYAYWSPSIPCPWVFTREGQSHEVRANGRFRSTDWKALLHAATAGFGITL
GPESVLADEVAAGRLVRVLPDYQGPARPMHVLYPAGRRPTVKLRSFVDAVVEEFGPR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789639, Length=294, Percent_Identity=34.0136054421769, Blast_Score=170, Evalue=1e-43,
Organism=Escherichia coli, GI145693193, Length=297, Percent_Identity=31.6498316498317, Blast_Score=155, Evalue=2e-39,
Organism=Escherichia coli, GI1786401, Length=289, Percent_Identity=32.8719723183391, Blast_Score=154, Evalue=7e-39,
Organism=Escherichia coli, GI1789440, Length=285, Percent_Identity=30.8771929824561, Blast_Score=145, Evalue=4e-36,
Organism=Escherichia coli, GI87081978, Length=292, Percent_Identity=31.5068493150685, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI1787128, Length=288, Percent_Identity=30.5555555555556, Blast_Score=137, Evalue=8e-34,
Organism=Escherichia coli, GI1787589, Length=288, Percent_Identity=25, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1788481, Length=300, Percent_Identity=25, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1789173, Length=258, Percent_Identity=29.4573643410853, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI157672245, Length=131, Percent_Identity=29.7709923664122, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32684; Mature: 32684

Theoretical pI: Translated: 7.99; Mature: 7.99

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRLTSMGVFIKAADLGSFAAAAEALAMSPQMVAKHVVFLEDRLGTALLNRTTRRQSLTD
CCCCHHCCEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VGRAYYDRCKLVLSEAEAAEALAHDMRSRPQGVLRVNAPMTFGAFTLAPFVTRYLTRYPE
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCC
MRVDLTLNDRFVDPLEDGVEVMVRIGEIADTALIAHPLAPYRLIACAAPSYLAARGTPKE
EEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEECCCCHHHHCCCCCCC
PADLQGHDCLVYAYWSPSIPCPWVFTREGQSHEVRANGRFRSTDWKALLHAATAGFGITL
CCCCCCCCEEEEEEECCCCCCCEEEECCCCCCEEECCCCCCCCHHHHHHHHHHCCCEEEE
GPESVLADEVAAGRLVRVLPDYQGPARPMHVLYPAGRRPTVKLRSFVDAVVEEFGPR
CCHHHHHHHHHHCHHEEECCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDRLTSMGVFIKAADLGSFAAAAEALAMSPQMVAKHVVFLEDRLGTALLNRTTRRQSLTD
CCCCHHCCEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VGRAYYDRCKLVLSEAEAAEALAHDMRSRPQGVLRVNAPMTFGAFTLAPFVTRYLTRYPE
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCC
MRVDLTLNDRFVDPLEDGVEVMVRIGEIADTALIAHPLAPYRLIACAAPSYLAARGTPKE
EEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEECCCCHHHHCCCCCCC
PADLQGHDCLVYAYWSPSIPCPWVFTREGQSHEVRANGRFRSTDWKALLHAATAGFGITL
CCCCCCCCEEEEEEECCCCCCCEEEECCCCCCEEECCCCCCCCHHHHHHHHHHCCCEEEE
GPESVLADEVAAGRLVRVLPDYQGPARPMHVLYPAGRRPTVKLRSFVDAVVEEFGPR
CCHHHHHHHHHHCHHEEECCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]