Click here to switch to the map view.

The map label for this gene is yedA [H]

Identifier: 83591728

GI number: 83591728

Start: 465562

End: 466524

Strand: Direct

Name: yedA [H]

Synonym: Rru_A0388

Alternate gene names: 83591728

Gene position: 465562-466524 (Clockwise)

Preceding gene: 83591727

Following gene: 83591730

Centisome position: 10.7

GC content: 66.15

Gene sequence:

>963_bases
ATGGTCGGCAAAGTCATAATGGCCAAGGAATTGGCCCTTCTTCTGATGCTCGCCACCCTGTGGGGGGCGTCTTACACCTT
CATCAAGATCGGCGTTGAAACCATCCCGCCGCTGACCCTGATCGCCCTGCGCACGCTGATCGCCGGGACCCTTCTGGCGG
CTATCATCGGCGGGCGCGGGCTGCGTTTGCCAAACGACCGGGGGACCTGGGCGCGGTTTCTGGTTCAAGCCTGCCTCAAC
AGCGCCATCCCCTTCACCTTGATCGCCTGGGCCGAACAAACGACCGACGCCGGATTGGCGGCGATCCTGAACGCCACCAC
CCCGGTTTTCGCCTTCCTGATGACGGCGCTGATCACCCGCCACGAGGCGGTGAGCGGGCGCAAGCTTTTGGGCGTCATCG
CCGGTTTGGCCGGCATTGGCCTGATCGTCGGCGTTCAGGCGCTGGGCGGCCTGGGGCGGGAGCTTTGGGCCCAACTGGCC
ATTGTCGCCGCCACGCTGTGCTACGCCGCCGCGGCGATCTTCGGCAAGACCTTCAAGGGTCTGGACCCGATGATGCCGGC
GGCCGGCTCGCTGATCTGCGGCGCGGCGCTCCTTGTTCCGCTCAGCCTTGTCGTCGATCATCCCTGGACCCTTGCCCCCA
GCGGGCGCTCCCTGCTGGCGCTGCTGGCGCTTTCGGTCTTTTCGACGGCGCTGGCTTTCGCCCTTTATTTCCGCCTGATC
CAGACCCTCGGATCGATCGGAACAACCGCCCAAGCCTATCTGCGGGTGCCGATCGGCGTCGCCATCGGCGTCGTGGTCCT
GGGGGAGGATCTCAGCGCGACGGCTTGGCTTGGCCTGGGCTGCGTTGTCGCCGGGGTCATCGCCATGACCCTTCCTGGGC
GAAAGCCGGCGGAAGGCGCCGCGATCAGGCGGGGACGGCATCCATCAGAACGACGGTTCCGTCCTGGCGTTGATGGGCGT
TGA

Upstream 100 bases:

>100_bases
GGCTGGCCAATCCGTTCGAGCCTTAGGCTCAACGAACGACACGCCTTTGTAAAAAAGAGGAGAGGGGCGCGAGCCCTTCT
TGCGCGGAGAGAAGGCCACG

Downstream 100 bases:

>100_bases
TCAAGGGAACCAAGCGGGTGAAATGCTCGGTGGCGCAATGGATGTCGAGGGCGGCGCGATCGGGCCATTCTTCGATGAAA
ACAAAGTGACCGGGATCCTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MVGKVIMAKELALLLMLATLWGASYTFIKIGVETIPPLTLIALRTLIAGTLLAAIIGGRGLRLPNDRGTWARFLVQACLN
SAIPFTLIAWAEQTTDAGLAAILNATTPVFAFLMTALITRHEAVSGRKLLGVIAGLAGIGLIVGVQALGGLGRELWAQLA
IVAATLCYAAAAIFGKTFKGLDPMMPAAGSLICGAALLVPLSLVVDHPWTLAPSGRSLLALLALSVFSTALAFALYFRLI
QTLGSIGTTAQAYLRVPIGVAIGVVVLGEDLSATAWLGLGCVVAGVIAMTLPGRKPAEGAAIRRGRHPSERRFRPGVDGR

Sequences:

>Translated_320_residues
MVGKVIMAKELALLLMLATLWGASYTFIKIGVETIPPLTLIALRTLIAGTLLAAIIGGRGLRLPNDRGTWARFLVQACLN
SAIPFTLIAWAEQTTDAGLAAILNATTPVFAFLMTALITRHEAVSGRKLLGVIAGLAGIGLIVGVQALGGLGRELWAQLA
IVAATLCYAAAAIFGKTFKGLDPMMPAAGSLICGAALLVPLSLVVDHPWTLAPSGRSLLALLALSVFSTALAFALYFRLI
QTLGSIGTTAQAYLRVPIGVAIGVVVLGEDLSATAWLGLGCVVAGVIAMTLPGRKPAEGAAIRRGRHPSERRFRPGVDGR
>Mature_320_residues
MVGKVIMAKELALLLMLATLWGASYTFIKIGVETIPPLTLIALRTLIAGTLLAAIIGGRGLRLPNDRGTWARFLVQACLN
SAIPFTLIAWAEQTTDAGLAAILNATTPVFAFLMTALITRHEAVSGRKLLGVIAGLAGIGLIVGVQALGGLGRELWAQLA
IVAATLCYAAAAIFGKTFKGLDPMMPAAGSLICGAALLVPLSLVVDHPWTLAPSGRSLLALLALSVFSTALAFALYFRLI
QTLGSIGTTAQAYLRVPIGVAIGVVVLGEDLSATAWLGLGCVVAGVIAMTLPGRKPAEGAAIRRGRHPSERRFRPGVDGR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 DUF6 domains [H]

Homologues:

Organism=Escherichia coli, GI1788269, Length=280, Percent_Identity=30.3571428571429, Blast_Score=89, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004779
- InterPro:   IPR000620 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 33235; Mature: 33235

Theoretical pI: Translated: 10.77; Mature: 10.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVGKVIMAKELALLLMLATLWGASYTFIKIGVETIPPLTLIALRTLIAGTLLAAIIGGRG
CCCCHHHHHHHHHHHHHHHHHCCCEEEEEECHHHCCHHHHHHHHHHHHHHHHHHHHCCCC
LRLPNDRGTWARFLVQACLNSAIPFTLIAWAEQTTDAGLAAILNATTPVFAFLMTALITR
CCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
HEAVSGRKLLGVIAGLAGIGLIVGVQALGGLGRELWAQLAIVAATLCYAAAAIFGKTFKG
HHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LDPMMPAAGSLICGAALLVPLSLVVDHPWTLAPSGRSLLALLALSVFSTALAFALYFRLI
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH
QTLGSIGTTAQAYLRVPIGVAIGVVVLGEDLSATAWLGLGCVVAGVIAMTLPGRKPAEGA
HHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCH
AIRRGRHPSERRFRPGVDGR
HHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MVGKVIMAKELALLLMLATLWGASYTFIKIGVETIPPLTLIALRTLIAGTLLAAIIGGRG
CCCCHHHHHHHHHHHHHHHHHCCCEEEEEECHHHCCHHHHHHHHHHHHHHHHHHHHCCCC
LRLPNDRGTWARFLVQACLNSAIPFTLIAWAEQTTDAGLAAILNATTPVFAFLMTALITR
CCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
HEAVSGRKLLGVIAGLAGIGLIVGVQALGGLGRELWAQLAIVAATLCYAAAAIFGKTFKG
HHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LDPMMPAAGSLICGAALLVPLSLVVDHPWTLAPSGRSLLALLALSVFSTALAFALYFRLI
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH
QTLGSIGTTAQAYLRVPIGVAIGVVVLGEDLSATAWLGLGCVVAGVIAMTLPGRKPAEGA
HHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCH
AIRRGRHPSERRFRPGVDGR
HHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]