| Definition | Rhodospirillum rubrum ATCC 11170 chromosome, complete genome. |
|---|---|
| Accession | NC_007643 |
| Length | 4,352,825 |
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The map label for this gene is cobT [H]
Identifier: 83591547
GI number: 83591547
Start: 256107
End: 258008
Strand: Direct
Name: cobT [H]
Synonym: Rru_A0207
Alternate gene names: 83591547
Gene position: 256107-258008 (Clockwise)
Preceding gene: 83591546
Following gene: 83591548
Centisome position: 5.88
GC content: 67.09
Gene sequence:
>1902_bases ATGACGCGTATTCCGGTGCCCGGTGCCGGCGGCCGGGCGAACGAGCCGCAGGAAGCCTTGAAAAACGTCACCTCGGCGAC GCTGCGCGCCGTGGCCGGGCGGCCGGGGCTGGTGGTGTCTTATACCCCGGGCGGGGCGGCGCTGATCGGCGGGCAGGCCC GTCTGCCCCTGCCGCCGCGCAAGCTCGATCCCGGACAGATCACCCGGCTGCGCGGCACCGCCGACAGTCTGGCCCTGAAA CTGCGCCACCACGACATCACCATCCAGGCCGGGCTGGAACCGACCGGGATCGAAGCCCGCGAGGTGTTTTCCGCCCTGGA ACAGGCGCGCTATGAAACCCTGGGGGCGGGGCGGATGGCCGGGGTGGCGGCCAATATCGCTGGGGCGGTCGAAGAACGGC TGGCCGGCGAAGGCTATGACAAGGCCACCGATCCCGGTCAGATCCCCTTGGGCGAGGCGGTGCGCCTGTTGGCTCTGGAA CGCTTTGGCAAGGTCGCGCCCGGGCCGGTGACCCGTCATGTGCTCGATCTGGCCCGTCAGGTGCTGCCCGAGTCCGCCCA GGCGGCGCTGGAGCGGATGATCGCCGAAGTGGGCGATCAGAAGCGCTTCGCCCGCTCGACCCGCGAATTGCTCGATGAAA TGGGCCTGGAGGATTTCGATCCGACCCAGGCCGACCGCTCCGATGACGAAACCCGCAGCGGCGAGAGCGAGCCCGAAGCT GGCGAAGGGGCCGAGGACAGCCCGCCCGAGGGGATTTCAAGCCCCGGTCCGGAAAGCGACATGCAGATGGCGCCGGGCGA GGGGGAAAGCGGCGAGGGCGAGGAAGAGGGCTCCGCCCAGCAGGCGACCCTGCCCGGCGAGGGCGGCGAGGATCCGGCTG GCGAGGGCGATCCGTCGCGCCGGCGCAATTCGGTCGACGAGGACGACGACGTCGACCGCTACAAGGTGTTCAGCCGCACC CATGATCAGGTGGTTGGCGCCCTGGATCTGTGCGATCCCGAAGAACTGACCCGCCTGCGCGCCCAGCTTGATATGCAGCT TTCGCCGCTTCAAGGCGTGGTGACGCGCATCGCCAACCGCTTGCAGCGCCGACTGATGGCCCAGCAGACCCGTAGCTGGG AATTCGACCTGGAAGAAGGCTTGCTTGATGTCAGCCGGCTGGCCCGCATGGTCGCCAACCCCACCTATACCTTGTCCTAC AAGCAGGAAAAGGAGATGGAGTTCCGCGATACGGTGGTCAGCCTGTTGATCGATAACTCCGGCTCGATGCGCGGCAGGCC GATTTCGGTGGCCGCCGTCAGCGCCGATATCCTGGCGCGCACCCTGGAGCGCTGCGGGGTCAAGGTCGAGATCCTGGGCT TCACCACCAGCGCCTGGAAGGGCGGCAAGGCCCGCGAGGACTGGGTGGCGGCGGGCAAGCCACCGCTTCCCGGACGGCTG AACGATCTGCGCCATATCATCTATAAGGAAGCCGATGTGCCCTGGCGGCGGGCCCGCCGGGCCTTGGGATTGATGCTCAA GGAAGGCATCCTCAAGGAAAATATCGATGGCGAGGCCTTGCTGTGGGCCCATAGCCGGTTGGTCGGCCGGCCGGAAGCCC GGCGTATCCTGATGGTGATCTCCGATGGCGCCCCGGTCGACGACAGCACGCTTTCGGCCAATACGGGCAATTACCTGGAA AAGCATCTGCGCGAGGTCATCGCCCTGATCCAGGATCGCTCGCCGGCCCAATTGGTCGCCATCGGCATCGGTCACGATGT CACCCGCTATTATCAGCGGGCGGTCACCATCAATGATCCCGAGGACCTGGGCGGCACCATGATGCGCCAGCTTCTCGAAT TGTTCGAAGAGCCCTCCGCGCCGAACCGCCGTTGGCGCAAGGCCGACCGGCTGGCCCTTTGA
Upstream 100 bases:
>100_bases CGGTGCTTTGGTAAGGAGCTCCCCGAGAGTGCGGCCTTCCGCACCGCCTTCCTGTGAGGCGCGGCGCGGGGCGGCGACAG GTCAGGGACGGATCGAAGCG
Downstream 100 bases:
>100_bases CCCTTTTTTTTCGCGGAGACGGACAATGCCGGGTTTTCTGACGGCCGATCTCATTCGGGCCCGGCTGGCGCCGAAGGATT TTCAGCGCGGCGAGGAGTAC
Product: cobalt chelatase, CobT subunit
Products: NA
Alternate protein names: Hydrogenobyrinic acid a,c-diamide cobaltochelatase subunit CobT [H]
Number of amino acids: Translated: 633; Mature: 632
Protein sequence:
>633_residues MTRIPVPGAGGRANEPQEALKNVTSATLRAVAGRPGLVVSYTPGGAALIGGQARLPLPPRKLDPGQITRLRGTADSLALK LRHHDITIQAGLEPTGIEAREVFSALEQARYETLGAGRMAGVAANIAGAVEERLAGEGYDKATDPGQIPLGEAVRLLALE RFGKVAPGPVTRHVLDLARQVLPESAQAALERMIAEVGDQKRFARSTRELLDEMGLEDFDPTQADRSDDETRSGESEPEA GEGAEDSPPEGISSPGPESDMQMAPGEGESGEGEEEGSAQQATLPGEGGEDPAGEGDPSRRRNSVDEDDDVDRYKVFSRT HDQVVGALDLCDPEELTRLRAQLDMQLSPLQGVVTRIANRLQRRLMAQQTRSWEFDLEEGLLDVSRLARMVANPTYTLSY KQEKEMEFRDTVVSLLIDNSGSMRGRPISVAAVSADILARTLERCGVKVEILGFTTSAWKGGKAREDWVAAGKPPLPGRL NDLRHIIYKEADVPWRRARRALGLMLKEGILKENIDGEALLWAHSRLVGRPEARRILMVISDGAPVDDSTLSANTGNYLE KHLREVIALIQDRSPAQLVAIGIGHDVTRYYQRAVTINDPEDLGGTMMRQLLELFEEPSAPNRRWRKADRLAL
Sequences:
>Translated_633_residues MTRIPVPGAGGRANEPQEALKNVTSATLRAVAGRPGLVVSYTPGGAALIGGQARLPLPPRKLDPGQITRLRGTADSLALK LRHHDITIQAGLEPTGIEAREVFSALEQARYETLGAGRMAGVAANIAGAVEERLAGEGYDKATDPGQIPLGEAVRLLALE RFGKVAPGPVTRHVLDLARQVLPESAQAALERMIAEVGDQKRFARSTRELLDEMGLEDFDPTQADRSDDETRSGESEPEA GEGAEDSPPEGISSPGPESDMQMAPGEGESGEGEEEGSAQQATLPGEGGEDPAGEGDPSRRRNSVDEDDDVDRYKVFSRT HDQVVGALDLCDPEELTRLRAQLDMQLSPLQGVVTRIANRLQRRLMAQQTRSWEFDLEEGLLDVSRLARMVANPTYTLSY KQEKEMEFRDTVVSLLIDNSGSMRGRPISVAAVSADILARTLERCGVKVEILGFTTSAWKGGKAREDWVAAGKPPLPGRL NDLRHIIYKEADVPWRRARRALGLMLKEGILKENIDGEALLWAHSRLVGRPEARRILMVISDGAPVDDSTLSANTGNYLE KHLREVIALIQDRSPAQLVAIGIGHDVTRYYQRAVTINDPEDLGGTMMRQLLELFEEPSAPNRRWRKADRLAL >Mature_632_residues TRIPVPGAGGRANEPQEALKNVTSATLRAVAGRPGLVVSYTPGGAALIGGQARLPLPPRKLDPGQITRLRGTADSLALKL RHHDITIQAGLEPTGIEAREVFSALEQARYETLGAGRMAGVAANIAGAVEERLAGEGYDKATDPGQIPLGEAVRLLALER FGKVAPGPVTRHVLDLARQVLPESAQAALERMIAEVGDQKRFARSTRELLDEMGLEDFDPTQADRSDDETRSGESEPEAG EGAEDSPPEGISSPGPESDMQMAPGEGESGEGEEEGSAQQATLPGEGGEDPAGEGDPSRRRNSVDEDDDVDRYKVFSRTH DQVVGALDLCDPEELTRLRAQLDMQLSPLQGVVTRIANRLQRRLMAQQTRSWEFDLEEGLLDVSRLARMVANPTYTLSYK QEKEMEFRDTVVSLLIDNSGSMRGRPISVAAVSADILARTLERCGVKVEILGFTTSAWKGGKAREDWVAAGKPPLPGRLN DLRHIIYKEADVPWRRARRALGLMLKEGILKENIDGEALLWAHSRLVGRPEARRILMVISDGAPVDDSTLSANTGNYLEK HLREVIALIQDRSPAQLVAIGIGHDVTRYYQRAVTINDPEDLGGTMMRQLLELFEEPSAPNRRWRKADRLAL
Specific function: Catalyzes cobalt insertion in the corrin ring [H]
COG id: COG4547
COG function: function code H; Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase)
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 VWFA domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006538 - InterPro: IPR002035 [H]
Pfam domain/function: PF06213 CobT [H]
EC number: =6.6.1.2 [H]
Molecular weight: Translated: 68978; Mature: 68846
Theoretical pI: Translated: 4.85; Mature: 4.85
Prosite motif: PS50234 VWFA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRIPVPGAGGRANEPQEALKNVTSATLRAVAGRPGLVVSYTPGGAALIGGQARLPLPPR CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEECCCCCCCCCCC KLDPGQITRLRGTADSLALKLRHHDITIQAGLEPTGIEAREVFSALEQARYETLGAGRMA CCCCCCEEEECCCHHHHEEEEEECEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCHHH GVAANIAGAVEERLAGEGYDKATDPGQIPLGEAVRLLALERFGKVAPGPVTRHVLDLARQ HHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH VLPESAQAALERMIAEVGDQKRFARSTRELLDEMGLEDFDPTQADRSDDETRSGESEPEA HCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCCCCC GEGAEDSPPEGISSPGPESDMQMAPGEGESGEGEEEGSAQQATLPGEGGEDPAGEGDPSR CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH RRNSVDEDDDVDRYKVFSRTHDQVVGALDLCDPEELTRLRAQLDMQLSPLQGVVTRIANR HCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHH LQRRLMAQQTRSWEFDLEEGLLDVSRLARMVANPTYTLSYKQEKEMEFRDTVVSLLIDNS HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHCCCC GSMRGRPISVAAVSADILARTLERCGVKVEILGFTTSAWKGGKAREDWVAAGKPPLPGRL CCCCCCCEEEHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCHHHHCCCCCCCCCHH NDLRHIIYKEADVPWRRARRALGLMLKEGILKENIDGEALLWAHSRLVGRPEARRILMVI HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHCCCCCCCEEEEEE SDGAPVDDSTLSANTGNYLEKHLREVIALIQDRSPAQLVAIGIGHDVTRYYQRAVTINDP ECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHCCCCCH EDLGGTMMRQLLELFEEPSAPNRRWRKADRLAL HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCC >Mature Secondary Structure TRIPVPGAGGRANEPQEALKNVTSATLRAVAGRPGLVVSYTPGGAALIGGQARLPLPPR CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEECCCCCCCCCCC KLDPGQITRLRGTADSLALKLRHHDITIQAGLEPTGIEAREVFSALEQARYETLGAGRMA CCCCCCEEEECCCHHHHEEEEEECEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCHHH GVAANIAGAVEERLAGEGYDKATDPGQIPLGEAVRLLALERFGKVAPGPVTRHVLDLARQ HHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH VLPESAQAALERMIAEVGDQKRFARSTRELLDEMGLEDFDPTQADRSDDETRSGESEPEA HCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCCCCC GEGAEDSPPEGISSPGPESDMQMAPGEGESGEGEEEGSAQQATLPGEGGEDPAGEGDPSR CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH RRNSVDEDDDVDRYKVFSRTHDQVVGALDLCDPEELTRLRAQLDMQLSPLQGVVTRIANR HCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHH LQRRLMAQQTRSWEFDLEEGLLDVSRLARMVANPTYTLSYKQEKEMEFRDTVVSLLIDNS HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHCCCC GSMRGRPISVAAVSADILARTLERCGVKVEILGFTTSAWKGGKAREDWVAAGKPPLPGRL CCCCCCCEEEHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCHHHHCCCCCCCCCHH NDLRHIIYKEADVPWRRARRALGLMLKEGILKENIDGEALLWAHSRLVGRPEARRILMVI HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHCCCCCCCEEEEEE SDGAPVDDSTLSANTGNYLEKHLREVIALIQDRSPAQLVAIGIGHDVTRYYQRAVTINDP ECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHCCCCCH EDLGGTMMRQLLELFEEPSAPNRRWRKADRLAL HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1917840 [H]