BacMap

Definition	Rhodospirillum rubrum ATCC 11170 chromosome, complete genome.
Accession	NC_007643
Length	4,352,825

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The map label for this gene is nodI [H]

Identifier: 83591457

GI number: 83591457

Start: 137327

End: 138064

Strand: Direct

Name: nodI [H]

Synonym: Rru_A0117

Alternate gene names: 83591457

Gene position: 137327-138064 (Clockwise)

Preceding gene: 83591456

Following gene: 83591460

Centisome position: 3.15

GC content: 70.6

Gene sequence:

>738_bases
ATGACGGCGGAGGTGGGGGGAACGCCGGCCCTGGCGCTTGCGGGGCTGCGCATACGGCGCGGGCGGCGGCAAACCTTGGC
GATCGACGATCTGGTCATCGGCCCCGGGGAAGTGGTTGGTCTGGTCGGCCTGAACGGGGCGGGCAAGACCACCTTGCTGC
GCGCCTGCGCCGGATTGCTGGCGCCGGCCGCCGGTTCTGTGCGGCTGTTTGGCGCCGATCCCCGCGCGGCGCCGGCCCGC
CGGGCCTTGGCCTATCTGCCTGAAAATCACCGGCCGATGGCGGTCTTGCGCGGCGATCACTGGGCGCGCGCCCTGTTGCT
TGGTCACGGCAAAACGATGGAGCCCACCGCCCTGGCCTCGGCCTGTCAGGCCTTGGCGCTTGATCCCGCCCTGCTGGGTC
GCCCGGTGGGTCAATGGTCGAAGGGCGGCGAACGCAAGCTGGCCTTGGCCGCCACCTTGCTGGCGGCAGCGCCACTGACC
TTGCTTGACGAACCGGCGGCCGGGCTTGATCCCCGGGCCCGGGTGGCGTTGAAGGATCGTTTGTTGGCGGCGCGCGCCGA
GGCGCGGACGGTGGTGCTGTCTAGCCACCTGCTGGCCGATGTGGAGGAGTTGTGCGACCGCCTGCTGGTTCTGCGCGATG
GAACGCTGATCTTCGATGGCCCGCCGGCGGCGCTGTGCGCCCGGTATGGCGGCATCGGCCTGGAACGCGCCTTTCTCGCC
CATATCGATCACGGCTGA

Upstream 100 bases:

>100_bases
TGACGCTGGCCGTTGAACGCGGCCCCGGCGACTGGCGGCGGGTCGGCCTGCGCCCGGCCCAGACCTATCGGGTGTTCGAC
GACCGCTTGGAGGGCGGCCT

Downstream 100 bases:

>100_bases
TCGGCGAAGCACCGCGCTTCGACAAGGCCTTCGGCTTCAAGGGCGTCGCGGGCGTCGGCTTCGGGCAGCATGCCCAGGCG
GCGGCCGATCTCCATCAGCG

Product: ABC transporter protein

Products: NA

Alternate protein names: Nodulation ATP-binding protein I [H]

Number of amino acids: Translated: 245; Mature: 244

Protein sequence:

>245_residues
MTAEVGGTPALALAGLRIRRGRRQTLAIDDLVIGPGEVVGLVGLNGAGKTTLLRACAGLLAPAAGSVRLFGADPRAAPAR
RALAYLPENHRPMAVLRGDHWARALLLGHGKTMEPTALASACQALALDPALLGRPVGQWSKGGERKLALAATLLAAAPLT
LLDEPAAGLDPRARVALKDRLLAARAEARTVVLSSHLLADVEELCDRLLVLRDGTLIFDGPPAALCARYGGIGLERAFLA
HIDHG

Sequences:

>Translated_245_residues
MTAEVGGTPALALAGLRIRRGRRQTLAIDDLVIGPGEVVGLVGLNGAGKTTLLRACAGLLAPAAGSVRLFGADPRAAPAR
RALAYLPENHRPMAVLRGDHWARALLLGHGKTMEPTALASACQALALDPALLGRPVGQWSKGGERKLALAATLLAAAPLT
LLDEPAAGLDPRARVALKDRLLAARAEARTVVLSSHLLADVEELCDRLLVLRDGTLIFDGPPAALCARYGGIGLERAFLA
HIDHG
>Mature_244_residues
TAEVGGTPALALAGLRIRRGRRQTLAIDDLVIGPGEVVGLVGLNGAGKTTLLRACAGLLAPAAGSVRLFGADPRAAPARR
ALAYLPENHRPMAVLRGDHWARALLLGHGKTMEPTALASACQALALDPALLGRPVGQWSKGGERKLALAATLLAAAPLTL
LDEPAAGLDPRARVALKDRLLAARAEARTVVLSSHLLADVEELCDRLLVLRDGTLIFDGPPAALCARYGGIGLERAFLAH
IDHG

Specific function: Part of the ABC transporter complex NodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modifi

COG id: COG1131

COG function: function code V; ABC-type multidrug transport system, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI150417984, Length=219, Percent_Identity=34.703196347032, Blast_Score=99, Evalue=4e-21,
Organism=Homo sapiens, GI27436953, Length=200, Percent_Identity=33, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI21536376, Length=197, Percent_Identity=29.4416243654822, Blast_Score=93, Evalue=2e-19,
Organism=Homo sapiens, GI105990541, Length=211, Percent_Identity=33.175355450237, Blast_Score=93, Evalue=2e-19,
Organism=Homo sapiens, GI153792144, Length=220, Percent_Identity=30.4545454545455, Blast_Score=92, Evalue=5e-19,
Organism=Homo sapiens, GI45446740, Length=232, Percent_Identity=30.1724137931034, Blast_Score=91, Evalue=7e-19,
Organism=Homo sapiens, GI47078218, Length=232, Percent_Identity=30.1724137931034, Blast_Score=91, Evalue=8e-19,
Organism=Homo sapiens, GI6005701, Length=198, Percent_Identity=32.3232323232323, Blast_Score=91, Evalue=8e-19,
Organism=Homo sapiens, GI27477115, Length=214, Percent_Identity=30.3738317757009, Blast_Score=88, Evalue=7e-18,
Organism=Homo sapiens, GI27881501, Length=240, Percent_Identity=29.1666666666667, Blast_Score=88, Evalue=8e-18,
Organism=Homo sapiens, GI30795238, Length=240, Percent_Identity=29.1666666666667, Blast_Score=88, Evalue=8e-18,
Organism=Homo sapiens, GI31657092, Length=222, Percent_Identity=29.7297297297297, Blast_Score=87, Evalue=9e-18,
Organism=Homo sapiens, GI116734710, Length=233, Percent_Identity=28.3261802575107, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI27262624, Length=204, Percent_Identity=26.9607843137255, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI27262626, Length=204, Percent_Identity=26.9607843137255, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI9955963, Length=243, Percent_Identity=29.2181069958848, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI11967969, Length=230, Percent_Identity=27.3913043478261, Blast_Score=69, Evalue=3e-12,
Organism=Escherichia coli, GI87081782, Length=220, Percent_Identity=33.6363636363636, Blast_Score=97, Evalue=8e-22,
Organism=Escherichia coli, GI1786253, Length=204, Percent_Identity=29.4117647058824, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI48994943, Length=244, Percent_Identity=28.2786885245902, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1788761, Length=217, Percent_Identity=29.9539170506912, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1787370, Length=226, Percent_Identity=28.7610619469027, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1788897, Length=198, Percent_Identity=27.7777777777778, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1790190, Length=205, Percent_Identity=27.3170731707317, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1786319, Length=206, Percent_Identity=28.1553398058252, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1790739, Length=230, Percent_Identity=27.3913043478261, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1789751, Length=247, Percent_Identity=27.9352226720648, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788002, Length=211, Percent_Identity=34.5971563981043, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1789032, Length=214, Percent_Identity=28.0373831775701, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787112, Length=221, Percent_Identity=31.2217194570136, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1790525, Length=200, Percent_Identity=25.5, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI48995001, Length=200, Percent_Identity=26.5, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1789991, Length=206, Percent_Identity=27.1844660194175, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1788450, Length=218, Percent_Identity=27.9816513761468, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1788506, Length=213, Percent_Identity=29.1079812206573, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1787164, Length=200, Percent_Identity=31.5, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI87082267, Length=229, Percent_Identity=26.6375545851528, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1786345, Length=232, Percent_Identity=31.4655172413793, Blast_Score=61, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI17510237, Length=209, Percent_Identity=32.5358851674641, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17565586, Length=225, Percent_Identity=28.4444444444444, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI71983523, Length=203, Percent_Identity=31.5270935960591, Blast_Score=85, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI71983516, Length=203, Percent_Identity=31.5270935960591, Blast_Score=85, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI71983510, Length=203, Percent_Identity=31.5270935960591, Blast_Score=85, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI115533608, Length=196, Percent_Identity=30.1020408163265, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI193202878, Length=208, Percent_Identity=27.8846153846154, Blast_Score=78, Evalue=4e-15,
Organism=Drosophila melanogaster, GI28574150, Length=216, Percent_Identity=31.9444444444444, Blast_Score=92, Evalue=3e-19,
Organism=Drosophila melanogaster, GI116007328, Length=216, Percent_Identity=31.9444444444444, Blast_Score=92, Evalue=3e-19,
Organism=Drosophila melanogaster, GI221512771, Length=241, Percent_Identity=29.8755186721992, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI28573573, Length=223, Percent_Identity=29.5964125560538, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI28573571, Length=223, Percent_Identity=29.5964125560538, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI24666092, Length=223, Percent_Identity=30.0448430493274, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI221500365, Length=219, Percent_Identity=30.5936073059361, Blast_Score=83, Evalue=1e-16,
Organism=Drosophila melanogaster, GI116007184, Length=219, Percent_Identity=30.5936073059361, Blast_Score=83, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24643674, Length=227, Percent_Identity=29.0748898678414, Blast_Score=81, Evalue=8e-16,
Organism=Drosophila melanogaster, GI24648314, Length=202, Percent_Identity=30.1980198019802, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24650853, Length=230, Percent_Identity=26.9565217391304, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI281362751, Length=230, Percent_Identity=26.9565217391304, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24650855, Length=230, Percent_Identity=26.9565217391304, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24582014, Length=213, Percent_Identity=28.169014084507, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24582012, Length=213, Percent_Identity=28.169014084507, Blast_Score=73, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR015851
- InterPro:   IPR005978
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 25451; Mature: 25320

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAEVGGTPALALAGLRIRRGRRQTLAIDDLVIGPGEVVGLVGLNGAGKTTLLRACAGLL
CCCCCCCCHHHHHHHHHHHCCCCCEEEECEEEECCCCEEEEEECCCCCHHHHHHHHHHHH
APAAGSVRLFGADPRAAPARRALAYLPENHRPMAVLRGDHWARALLLGHGKTMEPTALAS
CCCCCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEECCHHHEEHEECCCCCCCHHHHHH
ACQALALDPALLGRPVGQWSKGGERKLALAATLLAAAPLTLLDEPAAGLDPRARVALKDR
HHHHHHCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHH
LLAARAEARTVVLSSHLLADVEELCDRLLVLRDGTLIFDGPPAALCARYGGIGLERAFLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHCCCCHHHHHHH
HIDHG
HCCCC
>Mature Secondary Structure 
TAEVGGTPALALAGLRIRRGRRQTLAIDDLVIGPGEVVGLVGLNGAGKTTLLRACAGLL
CCCCCCCHHHHHHHHHHHCCCCCEEEECEEEECCCCEEEEEECCCCCHHHHHHHHHHHH
APAAGSVRLFGADPRAAPARRALAYLPENHRPMAVLRGDHWARALLLGHGKTMEPTALAS
CCCCCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEECCHHHEEHEECCCCCCCHHHHHH
ACQALALDPALLGRPVGQWSKGGERKLALAATLLAAAPLTLLDEPAAGLDPRARVALKDR
HHHHHHCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHH
LLAARAEARTVVLSSHLLADVEELCDRLLVLRDGTLIFDGPPAALCARYGGIGLERAFLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHCCCCHHHHHHH
HIDHG
HCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12801410 [H]