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The map label for this gene is exeD [H]

Identifier: 83591449

GI number: 83591449

Start: 127711

End: 129354

Strand: Direct

Name: exeD [H]

Synonym: Rru_A0109

Alternate gene names: 83591449

Gene position: 127711-129354 (Clockwise)

Preceding gene: 83591448

Following gene: 83591450

Centisome position: 2.93

GC content: 67.58

Gene sequence:

>1644_bases
ATGAGAGCGCCGGTCCGCCGCATTGCCCTGCTCTGCGCCCTGATGCCGGGCCTGGCGGGCTGTGAGCCTTTCGATGGCGC
CGGCGGCCTGACCAAAGACGATTATCGCGCCTTGCTCGCCCGCCGTGGCGGGGGGCCGTCCCCCCTTCCCGAACCGCCGA
TTCCGCCGCTGCTGGAACCCCAGCTTGCCGCCTTGCCCGCCCCCGAGGAGGCGCGCCGGGTGACGGTGATCGCCCAAAGC
CCGACGCCGGTGGCCGATCTGCTGGTCGCCCTGTGCCGCGAAGTCGGGGTCGATCTGGAAATGAGCCCCGAGGTCGGCGG
CCTTGTCGTTCTCTCCCTGCGCGACCGGCCCTTTCCCGAGGTCGTCGGCCGTTTGGGGGCGATGGCTGGGCTTGATATCA
CCCTGGTCGACGGGGTGGTCAGGGTCGATCTCGATCGGCCGCTGCCGGCGATCTACCACCTTGACGCCCTTAACATGGCG
CGCAGTTCGGAAGGCAGCGTCTCGACCAGCACCGATGTCTTCACCAGCGTTGCCGCCAAGGGAAACTCTCGCGACAGTCG
GGGCAACGCCTCGGCCAGTCTGGTCAGCAGCGCGTCGAAAGCCGATCTGTGGGGCGAGGTGGCCGGCGGGCTTGGCCAGA
TCCTGGGCCGGGCCGAGGGCGACCCGCTGGCCGAGGAGGCCCGCGACGGCGTGGCGCGCGGTGGGTTTCACATCAACCGT
CAGGCCGGGCTGATCACCGTCGTCGGCCGCCGCGCCCAGCAGCGCGAGGTGGCCGATTATCTGGCCGGGGTGCGCCAATC
GATGGCGACCCAGGTGCTGATCGAAGCCAAGATCGTCGAGGTCACGCTGAAGGACCAGTATCGCGGCGGCATCGATTGGA
AGGTGCTGACCGATGGCGGGGAATTTCTGCTTGATATCCCGGGAGCGGCCGGGGTGGTCGCCCCGCCTTTGACCGACGCG
GCGGCGACGTTGAGCCTGGGGACGCGGGCCACGCTGGGTCCGGTGGAGTTATCGGCACTGGTACAATTCATCAAGACCTT
CGGCGCCGTGCGCACCCTGTCGAGCCCCCGGCTGACGGTGATGAACAATCAGACGGCGGTGCTCAAGGTCGCCGAGAACG
AGGTCTATTTCGTTGTCGATGTCGATACGGTGACCAGCGACGGCGTGACCCAGACCACCTATTCCAGCGAGATCAATACG
GTTCCCATCGGTCTGGTGATGACCGTCCAGCCCAGTGTCGAGCCCGGCGGCGGCCGCGTCACCCTGGGCCTGCGCCCGAC
CATCTCGCGCATCGCCGACCGTGTCGCCGATCCGGCGGTGTCGTTGCAAAACCTGTCGGTGCAATCGCTTATTCCGGTGG
TCGAGGTCCGCGAACTCGATTCGGTGGTGACCATCGACAATGGCGCCGTGGTGGTGATGGGCGGCCTGATGCAAGAACGC
ATGGGCCGCGACGAGGAGGGCGTGCCCGGGTTGGGCGACGTTCCGCTGATCGGCCGGGCCTTTCGCCATGACAGCGCCGA
TACGGACGTGGTGGAACTGGTGGTGCTGTTGCGCGCCACCGTGATCGGCGGCGCCCATAGCCATCCCGCCGATCGCCAGC
TTTATCGCATCTATACCCCCGATCCCCGGCCCTTGGCGATGTAG

Upstream 100 bases:

>100_bases
CTATTCTTCTTTTAAGTGTATTTCCCGAAAAACTGCGATAGGAATAGGGGTATTGAATCATCTAGGGGTGGTTTGACGCC
CCCCGGCCCGGGGAGGGGCG

Downstream 100 bases:

>100_bases
GAGCACAGCCGATGCGCGCCGCCGCTTTTCATCTGCTGGCCTGTTTGCTGGGCGATCGCGGCCTTGTCGTCGTGGCGGCG
GTGATGGCGGCGACGGCGGG

Product: type II and III secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 547; Mature: 547

Protein sequence:

>547_residues
MRAPVRRIALLCALMPGLAGCEPFDGAGGLTKDDYRALLARRGGGPSPLPEPPIPPLLEPQLAALPAPEEARRVTVIAQS
PTPVADLLVALCREVGVDLEMSPEVGGLVVLSLRDRPFPEVVGRLGAMAGLDITLVDGVVRVDLDRPLPAIYHLDALNMA
RSSEGSVSTSTDVFTSVAAKGNSRDSRGNASASLVSSASKADLWGEVAGGLGQILGRAEGDPLAEEARDGVARGGFHINR
QAGLITVVGRRAQQREVADYLAGVRQSMATQVLIEAKIVEVTLKDQYRGGIDWKVLTDGGEFLLDIPGAAGVVAPPLTDA
AATLSLGTRATLGPVELSALVQFIKTFGAVRTLSSPRLTVMNNQTAVLKVAENEVYFVVDVDTVTSDGVTQTTYSSEINT
VPIGLVMTVQPSVEPGGGRVTLGLRPTISRIADRVADPAVSLQNLSVQSLIPVVEVRELDSVVTIDNGAVVVMGGLMQER
MGRDEEGVPGLGDVPLIGRAFRHDSADTDVVELVVLLRATVIGGAHSHPADRQLYRIYTPDPRPLAM

Sequences:

>Translated_547_residues
MRAPVRRIALLCALMPGLAGCEPFDGAGGLTKDDYRALLARRGGGPSPLPEPPIPPLLEPQLAALPAPEEARRVTVIAQS
PTPVADLLVALCREVGVDLEMSPEVGGLVVLSLRDRPFPEVVGRLGAMAGLDITLVDGVVRVDLDRPLPAIYHLDALNMA
RSSEGSVSTSTDVFTSVAAKGNSRDSRGNASASLVSSASKADLWGEVAGGLGQILGRAEGDPLAEEARDGVARGGFHINR
QAGLITVVGRRAQQREVADYLAGVRQSMATQVLIEAKIVEVTLKDQYRGGIDWKVLTDGGEFLLDIPGAAGVVAPPLTDA
AATLSLGTRATLGPVELSALVQFIKTFGAVRTLSSPRLTVMNNQTAVLKVAENEVYFVVDVDTVTSDGVTQTTYSSEINT
VPIGLVMTVQPSVEPGGGRVTLGLRPTISRIADRVADPAVSLQNLSVQSLIPVVEVRELDSVVTIDNGAVVVMGGLMQER
MGRDEEGVPGLGDVPLIGRAFRHDSADTDVVELVVLLRATVIGGAHSHPADRQLYRIYTPDPRPLAM
>Mature_547_residues
MRAPVRRIALLCALMPGLAGCEPFDGAGGLTKDDYRALLARRGGGPSPLPEPPIPPLLEPQLAALPAPEEARRVTVIAQS
PTPVADLLVALCREVGVDLEMSPEVGGLVVLSLRDRPFPEVVGRLGAMAGLDITLVDGVVRVDLDRPLPAIYHLDALNMA
RSSEGSVSTSTDVFTSVAAKGNSRDSRGNASASLVSSASKADLWGEVAGGLGQILGRAEGDPLAEEARDGVARGGFHINR
QAGLITVVGRRAQQREVADYLAGVRQSMATQVLIEAKIVEVTLKDQYRGGIDWKVLTDGGEFLLDIPGAAGVVAPPLTDA
AATLSLGTRATLGPVELSALVQFIKTFGAVRTLSSPRLTVMNNQTAVLKVAENEVYFVVDVDTVTSDGVTQTTYSSEINT
VPIGLVMTVQPSVEPGGGRVTLGLRPTISRIADRVADPAVSLQNLSVQSLIPVVEVRELDSVVTIDNGAVVVMGGLMQER
MGRDEEGVPGLGDVPLIGRAFRHDSADTDVVELVVLLRATVIGGAHSHPADRQLYRIYTPDPRPLAM

Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]

COG id: COG1450

COG function: function code NU; Type II secretory pathway, component PulD

Gene ontology:

Cell location: Cell outer membrane (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP D family [H]

Homologues:

Organism=Escherichia coli, GI1789793, Length=454, Percent_Identity=24.4493392070485, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR005644
- InterPro:   IPR004846
- InterPro:   IPR013356
- InterPro:   IPR004845 [H]

Pfam domain/function: PF00263 Secretin; PF03958 Secretin_N [H]

EC number: NA

Molecular weight: Translated: 57519; Mature: 57519

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00285 POTATO_INHIBITOR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAPVRRIALLCALMPGLAGCEPFDGAGGLTKDDYRALLARRGGGPSPLPEPPIPPLLEP
CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
QLAALPAPEEARRVTVIAQSPTPVADLLVALCREVGVDLEMSPEVGGLVVLSLRDRPFPE
HHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEECCCCCCEEEEEECCCCHHH
VVGRLGAMAGLDITLVDGVVRVDLDRPLPAIYHLDALNMARSSEGSVSTSTDVFTSVAAK
HHHHHHHHCCCEEEEECCEEEEECCCCCCHHEEEHHHHHHCCCCCCCCCHHHHHHHHHHC
GNSRDSRGNASASLVSSASKADLWGEVAGGLGQILGRAEGDPLAEEARDGVARGGFHINR
CCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCHHHCCEEEEC
QAGLITVVGRRAQQREVADYLAGVRQSMATQVLIEAKIVEVTLKDQYRGGIDWKVLTDGG
CCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCCCCCCEEEEECCC
EFLLDIPGAAGVVAPPLTDAAATLSLGTRATLGPVELSALVQFIKTFGAVRTLSSPRLTV
CEEEECCCCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEE
MNNQTAVLKVAENEVYFVVDVDTVTSDGVTQTTYSSEINTVPIGLVMTVQPSVEPGGGRV
ECCCEEEEEEECCCEEEEEEECCCCCCCCEEEEECCCCCEEEEEEEEEECCCCCCCCCEE
TLGLRPTISRIADRVADPAVSLQNLSVQSLIPVVEVRELDSVVTIDNGAVVVMGGLMQER
EEECCHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHCCCCEEEECCCCEEEECCHHHHH
MGRDEEGVPGLGDVPLIGRAFRHDSADTDVVELVVLLRATVIGGAHSHPADRQLYRIYTP
CCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECC
DPRPLAM
CCCCCCC
>Mature Secondary Structure
MRAPVRRIALLCALMPGLAGCEPFDGAGGLTKDDYRALLARRGGGPSPLPEPPIPPLLEP
CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
QLAALPAPEEARRVTVIAQSPTPVADLLVALCREVGVDLEMSPEVGGLVVLSLRDRPFPE
HHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEECCCCCCEEEEEECCCCHHH
VVGRLGAMAGLDITLVDGVVRVDLDRPLPAIYHLDALNMARSSEGSVSTSTDVFTSVAAK
HHHHHHHHCCCEEEEECCEEEEECCCCCCHHEEEHHHHHHCCCCCCCCCHHHHHHHHHHC
GNSRDSRGNASASLVSSASKADLWGEVAGGLGQILGRAEGDPLAEEARDGVARGGFHINR
CCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCHHHCCEEEEC
QAGLITVVGRRAQQREVADYLAGVRQSMATQVLIEAKIVEVTLKDQYRGGIDWKVLTDGG
CCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCCCCCCEEEEECCC
EFLLDIPGAAGVVAPPLTDAAATLSLGTRATLGPVELSALVQFIKTFGAVRTLSSPRLTV
CEEEECCCCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEE
MNNQTAVLKVAENEVYFVVDVDTVTSDGVTQTTYSSEINTVPIGLVMTVQPSVEPGGGRV
ECCCEEEEEEECCCEEEEEEECCCCCCCCEEEEECCCCCEEEEEEEEEECCCCCCCCCEE
TLGLRPTISRIADRVADPAVSLQNLSVQSLIPVVEVRELDSVVTIDNGAVVVMGGLMQER
EEECCHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHCCCCEEEECCCCEEEECCHHHHH
MGRDEEGVPGLGDVPLIGRAFRHDSADTDVVELVVLLRATVIGGAHSHPADRQLYRIYTP
CCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECC
DPRPLAM
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1640836 [H]