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The map label for this gene is degQ [C]

Identifier: 83591364

GI number: 83591364

Start: 28454

End: 29599

Strand: Direct

Name: degQ [C]

Synonym: Rru_A0024

Alternate gene names: 83591364

Gene position: 28454-29599 (Clockwise)

Preceding gene: 83591363

Following gene: 83591365

Centisome position: 0.65

GC content: 67.8

Gene sequence:

>1146_bases
ATGACGCGAAGGCGGTGCGGTGTCTGGTCCATGCTTGGCGGTGCGGCCCTGGTTTTATCGACGATCGGTCCGGCCGGCGC
CCTGCCGCCCGCGCCAGCCGCCGCCGGGGCCGGTCTGGGGCCGTCTTTGGCGCTCACCCCCGTGTTCATGGTTGGCGAGG
AGGGCGTGCTCACCCTGGCGCCGACGCTTGAGATCGTCACTCCGGCGGTGGTCAATATCGCGGTGAAGGCCACGGTGGCG
GCGCGGCCCAATCCCTTGCTGTCCGATCCGCTGTTTCGCCAGTTCTTCGGCGTGCCGCCCGGGGCCGAAGGCCCGCGCGA
GCGCACGGTGGTATCGGCCGGGTCGGGGGTGATCGTCGATGCGGTGCGCGGCACCATCTTGACCAACCACCATGTCGTCG
ACGGCGCCGAGGATATCACCGTCACCCTCAAGGATCGCCGGGTGCTCAAGGCGACGCTGCTGGGCAGCGATCCCGGCACC
GACATCGCCGTGCTCCGCGTCAAGGCCGATCGTCTGACCGCCTTGCATCTGGCCGATTCGGATCGGGCCCAGGTTGGCGA
TCTGACCATCGCCATCGGCAATCCCTTCGGTCTGGGCCAAACGGTGACCACCGGGGTGATCAGCGCCAAGGGGCGCAGCG
GCGTTATCCCCGACGGCTACGAGGATTTCCTGCAGACCGACGCGTCGATCAACCCGGGCAATTCCGGGGGCGCCCTGGTC
AATTCCCGGGGCGATCTGGTTGGCATCAATACCGCGATCTTGTCGTCGGGCGGCGGCAGCGTCGGCATCGGCTTTGCCAT
TCCCAGCAATATCGCCCGCGCGGTGATGGAACAGATCCTCAAGGACGGAACGGTTCGGCGCGGTCATCTTGGCGTGTCGA
TCCAGACCGTCAGTCCGGCCGTGGCCGAAAGCCTGGGCCTGCCCCGGGCGGCCGGGGTTATCATCGCCGCGGTCGAGCGG
GGATCGACCGCCGAAAAAGTCGGGCTGCGCACCGGCGATGTGATCTTGGCGGTCGACGGCAGGCCTTCGGAAACCGCCGA
GGTGCTGCGCCGCCAGATTGGCCTTGCCCAGATCGGCGACCGGGTGAGGCTGACGGTGATGCGCGAGGGCAAATCCTTCG
ATCTTCAGGCCCGCATCGGCTCATGA

Upstream 100 bases:

>100_bases
TCTTCTCGTCCCGATCGCTGGGGGATTGCTCTCGGGGGCGGTGGTCGCCGCCCGGCGCTGGTTTCCACCCTTGGGATAGT
CGTGCGAGGAGGTTTTTGCG

Downstream 100 bases:

>100_bases
CGCCACCAGCCCTTGGCGGAGGGGCCGGGGATGCTTAAGATAGGGCCTCCGAAGGGGGAGCGGCCGGGGTTTGCCCAGCC
CTTTTCCTTTGGTTTGGCCA

Product: peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 381; Mature: 380

Protein sequence:

>381_residues
MTRRRCGVWSMLGGAALVLSTIGPAGALPPAPAAAGAGLGPSLALTPVFMVGEEGVLTLAPTLEIVTPAVVNIAVKATVA
ARPNPLLSDPLFRQFFGVPPGAEGPRERTVVSAGSGVIVDAVRGTILTNHHVVDGAEDITVTLKDRRVLKATLLGSDPGT
DIAVLRVKADRLTALHLADSDRAQVGDLTIAIGNPFGLGQTVTTGVISAKGRSGVIPDGYEDFLQTDASINPGNSGGALV
NSRGDLVGINTAILSSGGGSVGIGFAIPSNIARAVMEQILKDGTVRRGHLGVSIQTVSPAVAESLGLPRAAGVIIAAVER
GSTAEKVGLRTGDVILAVDGRPSETAEVLRRQIGLAQIGDRVRLTVMREGKSFDLQARIGS

Sequences:

>Translated_381_residues
MTRRRCGVWSMLGGAALVLSTIGPAGALPPAPAAAGAGLGPSLALTPVFMVGEEGVLTLAPTLEIVTPAVVNIAVKATVA
ARPNPLLSDPLFRQFFGVPPGAEGPRERTVVSAGSGVIVDAVRGTILTNHHVVDGAEDITVTLKDRRVLKATLLGSDPGT
DIAVLRVKADRLTALHLADSDRAQVGDLTIAIGNPFGLGQTVTTGVISAKGRSGVIPDGYEDFLQTDASINPGNSGGALV
NSRGDLVGINTAILSSGGGSVGIGFAIPSNIARAVMEQILKDGTVRRGHLGVSIQTVSPAVAESLGLPRAAGVIIAAVER
GSTAEKVGLRTGDVILAVDGRPSETAEVLRRQIGLAQIGDRVRLTVMREGKSFDLQARIGS
>Mature_380_residues
TRRRCGVWSMLGGAALVLSTIGPAGALPPAPAAAGAGLGPSLALTPVFMVGEEGVLTLAPTLEIVTPAVVNIAVKATVAA
RPNPLLSDPLFRQFFGVPPGAEGPRERTVVSAGSGVIVDAVRGTILTNHHVVDGAEDITVTLKDRRVLKATLLGSDPGTD
IAVLRVKADRLTALHLADSDRAQVGDLTIAIGNPFGLGQTVTTGVISAKGRSGVIPDGYEDFLQTDASINPGNSGGALVN
SRGDLVGINTAILSSGGGSVGIGFAIPSNIARAVMEQILKDGTVRRGHLGVSIQTVSPAVAESLGLPRAAGVIIAAVERG
STAEKVGLRTGDVILAVDGRPSETAEVLRRQIGLAQIGDRVRLTVMREGKSFDLQARIGS

Specific function: Protease With A Shared Specificity With Degp. [C]

COG id: COG0265

COG function: function code O; Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PDZ (DHR) domains [H]

Homologues:

Organism=Homo sapiens, GI22129776, Length=304, Percent_Identity=33.8815789473684, Blast_Score=132, Evalue=4e-31,
Organism=Homo sapiens, GI24308541, Length=274, Percent_Identity=32.4817518248175, Blast_Score=127, Evalue=2e-29,
Organism=Homo sapiens, GI7019477, Length=253, Percent_Identity=35.9683794466403, Blast_Score=122, Evalue=4e-28,
Organism=Homo sapiens, GI4506141, Length=329, Percent_Identity=30.0911854103343, Blast_Score=120, Evalue=3e-27,
Organism=Escherichia coli, GI1789629, Length=322, Percent_Identity=45.0310559006211, Blast_Score=269, Evalue=2e-73,
Organism=Escherichia coli, GI1786356, Length=343, Percent_Identity=41.9825072886297, Blast_Score=263, Evalue=1e-71,
Organism=Escherichia coli, GI1789630, Length=317, Percent_Identity=39.4321766561514, Blast_Score=204, Evalue=8e-54,
Organism=Drosophila melanogaster, GI24646839, Length=271, Percent_Identity=31.7343173431734, Blast_Score=113, Evalue=2e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001478
- InterPro:   IPR009003
- InterPro:   IPR011782
- InterPro:   IPR001254
- InterPro:   IPR001940 [H]

Pfam domain/function: PF00595 PDZ; PF00089 Trypsin [H]

EC number: 3.4.21.-

Molecular weight: Translated: 38841; Mature: 38710

Theoretical pI: Translated: 9.24; Mature: 9.24

Prosite motif: PS50106 PDZ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRRRCGVWSMLGGAALVLSTIGPAGALPPAPAAAGAGLGPSLALTPVFMVGEEGVLTLA
CCCCCCCHHHHHHHHHEEHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEE
PTLEIVTPAVVNIAVKATVAARPNPLLSDPLFRQFFGVPPGAEGPRERTVVSAGSGVIVD
CCHHHHCHHHEEEEEEEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCCEEEECCCCEEEE
AVRGTILTNHHVVDGAEDITVTLKDRRVLKATLLGSDPGTDIAVLRVKADRLTALHLADS
ECCCEEEECCEEECCCCEEEEEEECCEEEEEEEECCCCCCCEEEEEEECCCEEEEEECCC
DRAQVGDLTIAIGNPFGLGQTVTTGVISAKGRSGVIPDGYEDFLQTDASINPGNSGGALV
CCCEECEEEEEECCCCCCCCHHHHHEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCEEE
NSRGDLVGINTAILSSGGGSVGIGFAIPSNIARAVMEQILKDGTVRRGHLGVSIQTVSPA
ECCCCEEEEEHEEEECCCCCEEEEEECHHHHHHHHHHHHHHCCCEEECEEEEEEEECCHH
VAESLGLPRAAGVIIAAVERGSTAEKVGLRTGDVILAVDGRPSETAEVLRRQIGLAQIGD
HHHHCCCCCCCCEEEEEECCCCCHHHHCCCCCCEEEEECCCCCHHHHHHHHHCCHHHCCC
RVRLTVMREGKSFDLQARIGS
EEEEEEEECCCCEEEEEECCC
>Mature Secondary Structure 
TRRRCGVWSMLGGAALVLSTIGPAGALPPAPAAAGAGLGPSLALTPVFMVGEEGVLTLA
CCCCCCHHHHHHHHHEEHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEE
PTLEIVTPAVVNIAVKATVAARPNPLLSDPLFRQFFGVPPGAEGPRERTVVSAGSGVIVD
CCHHHHCHHHEEEEEEEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCCEEEECCCCEEEE
AVRGTILTNHHVVDGAEDITVTLKDRRVLKATLLGSDPGTDIAVLRVKADRLTALHLADS
ECCCEEEECCEEECCCCEEEEEEECCEEEEEEEECCCCCCCEEEEEEECCCEEEEEECCC
DRAQVGDLTIAIGNPFGLGQTVTTGVISAKGRSGVIPDGYEDFLQTDASINPGNSGGALV
CCCEECEEEEEECCCCCCCCHHHHHEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCEEE
NSRGDLVGINTAILSSGGGSVGIGFAIPSNIARAVMEQILKDGTVRRGHLGVSIQTVSPA
ECCCCEEEEEHEEEECCCCCEEEEEECHHHHHHHHHHHHHHCCCEEECEEEEEEEECCHH
VAESLGLPRAAGVIIAAVERGSTAEKVGLRTGDVILAVDGRPSETAEVLRRQIGLAQIGD
HHHHCCCCCCCCEEEEEECCCCCHHHHCCCCCCEEEEECCCCCHHHHHHHHHCCHHHCCC
RVRLTVMREGKSFDLQARIGS
EEEEEEEECCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]