Click here to switch to the map view.

The map label for this gene is radA [H]

Identifier: 83591306

GI number: 83591306

Start: 2595130

End: 2596599

Strand: Reverse

Name: radA [H]

Synonym: Moth_2490

Alternate gene names: 83591306

Gene position: 2596599-2595130 (Counterclockwise)

Preceding gene: 83591307

Following gene: 83591305

Centisome position: 98.78

GC content: 57.96

Gene sequence:

>1470_bases
GTGCCACCATCGGTGAATGAAAATAGCGGGGCTGATAAAAGCAAGGGGGCAGAACTCCTGACCAGGATCAAAGAACGCTT
CGTTTGCCAGCAGTGCGGTTATGAATCCCAGGGCTTCCTGGGCCGATGCCCGGCGTGTGGTAGTTGGAATAGCCTGGTGG
CCGAGGCCATAATTCCAGAGGGTATAAAAAAAGCGGCAGGCTCCGGGGAAGTCCCCGTCCTGCTATCCCGGGTAAATGAT
ATCAGTGAAAAGAGGCTGGTGACTACCCTGGGCGAATGGGACCGGGTCCTGGGAGGCGGGCTAGTTCCCGGTTCCCTGGT
CCTGGTTGGCGGGGCTCCCGGGATTGGTAAGTCTACCCTCCTTCTCCAGGTGGCCCACTTACTCTCTTCGAGGTACGGTA
AAATACTCTATGTCACCGGAGAAGAATCCGCCAGCCAGACCCGGTTAAGGGCTCGACGCCTGGGCGCCGAGGAAGGCGAG
ATCTACTTACTGGCGGAAACTAATATTGAAGGGATCCTCCTGCAGATAGAACGGCTGCAGCCGGTAGTAGTTATGGTGGA
TTCTATCCAGACGATGCTTCTTCCTGATATCCAGGCTGCCCCGGGCAGCGTTTCCCAGGTGCGGGAAGGAGCGGCCCGCT
TTTTACGCCTGGCCAAGGATGGCGGCCCGGCAGTAATTCTGGTGGGTCACGTCACCAAGGAAGGATTCCTGGCCGGCCCG
AAGGTCCTGGAACACCTGGTGGATTGTGTCCTCTACCTGGAGGGTGAACGCTACCAGGCCTACCGCATTCTGCGGTCCGT
TAAAAATCGCTTCGGCTCCACCAATGAGATTGGCGTTTTTGAGATGACCGGCTCCGGTTTGCAGGAAGTAACCAACCCCT
CGGCCATGCTTATGGCCGAGCGCCCGGCCGGAGTGGCGGGCTCCAGTGTCGTCGCCTGCCTGGAAGGCACCCGGCCCCTT
CTACTGGAGATCCAGGCCCTGGTGAGTAAGACTGCCTTTGGAAACCCGCGGCGGCTAGCTACCGGTATTGATTTCAACCG
GGCCCTCCTGCTGGCAGCGGTCCTGGAGAAACGGGCCGGCCTGCCCCTGGGGGGCTACGATATATACCTTAACGTGGCCG
GTGGTATTGCCATCAATGAACCGGCAGCCGACCTGGGTATATGCCTGGCCATTGCCTCTGGTTTGAAGGATCGTCCCCTG
GAATCCCGGACCCTTGTCCTGGGGGAGGTTGGCCTTGCTGGAGAGGTAAGGGCCGTCACCCAGCTGGAAAGGCGCGTTGA
GGAAGCAGCCAGGCTGGGTTTTAACCGCTTTATAATTCCGGCTGGCAATAGGGGGGGTCTTAAAGGGCAGAGCGGCTGCG
AAATATATAAAGTATCTACAATAAATGAGGCCCTGCGACTGGCCCTCGTTAATACCGGCTCAGGGGCAGGCGATAATACG
TTGAGTAACCCGTTTTATAAATACTCTTAG

Upstream 100 bases:

>100_bases
CCGGGGGCAGGCCTTACAGGAAGAAGGGACCTAGATTGGTAGGACTTCCCAGAGCGGGTCGGCGGTGATATAATTATCTT
CGACAGCCTCCCTTGGCCAA

Downstream 100 bases:

>100_bases
TCATAAATGGAGGGTCGCTTAATGTTTAAAGTTGGCGATAAAGTGGTGTACCCAATGCATGGGGCCGGGGTCATCGAGGC
CATCGAGGAGCGGGAAGTCC

Product: DNA repair protein RadA

Products: NA

Alternate protein names: DNA repair protein sms homolog [H]

Number of amino acids: Translated: 489; Mature: 488

Protein sequence:

>489_residues
MPPSVNENSGADKSKGAELLTRIKERFVCQQCGYESQGFLGRCPACGSWNSLVAEAIIPEGIKKAAGSGEVPVLLSRVND
ISEKRLVTTLGEWDRVLGGGLVPGSLVLVGGAPGIGKSTLLLQVAHLLSSRYGKILYVTGEESASQTRLRARRLGAEEGE
IYLLAETNIEGILLQIERLQPVVVMVDSIQTMLLPDIQAAPGSVSQVREGAARFLRLAKDGGPAVILVGHVTKEGFLAGP
KVLEHLVDCVLYLEGERYQAYRILRSVKNRFGSTNEIGVFEMTGSGLQEVTNPSAMLMAERPAGVAGSSVVACLEGTRPL
LLEIQALVSKTAFGNPRRLATGIDFNRALLLAAVLEKRAGLPLGGYDIYLNVAGGIAINEPAADLGICLAIASGLKDRPL
ESRTLVLGEVGLAGEVRAVTQLERRVEEAARLGFNRFIIPAGNRGGLKGQSGCEIYKVSTINEALRLALVNTGSGAGDNT
LSNPFYKYS

Sequences:

>Translated_489_residues
MPPSVNENSGADKSKGAELLTRIKERFVCQQCGYESQGFLGRCPACGSWNSLVAEAIIPEGIKKAAGSGEVPVLLSRVND
ISEKRLVTTLGEWDRVLGGGLVPGSLVLVGGAPGIGKSTLLLQVAHLLSSRYGKILYVTGEESASQTRLRARRLGAEEGE
IYLLAETNIEGILLQIERLQPVVVMVDSIQTMLLPDIQAAPGSVSQVREGAARFLRLAKDGGPAVILVGHVTKEGFLAGP
KVLEHLVDCVLYLEGERYQAYRILRSVKNRFGSTNEIGVFEMTGSGLQEVTNPSAMLMAERPAGVAGSSVVACLEGTRPL
LLEIQALVSKTAFGNPRRLATGIDFNRALLLAAVLEKRAGLPLGGYDIYLNVAGGIAINEPAADLGICLAIASGLKDRPL
ESRTLVLGEVGLAGEVRAVTQLERRVEEAARLGFNRFIIPAGNRGGLKGQSGCEIYKVSTINEALRLALVNTGSGAGDNT
LSNPFYKYS
>Mature_488_residues
PPSVNENSGADKSKGAELLTRIKERFVCQQCGYESQGFLGRCPACGSWNSLVAEAIIPEGIKKAAGSGEVPVLLSRVNDI
SEKRLVTTLGEWDRVLGGGLVPGSLVLVGGAPGIGKSTLLLQVAHLLSSRYGKILYVTGEESASQTRLRARRLGAEEGEI
YLLAETNIEGILLQIERLQPVVVMVDSIQTMLLPDIQAAPGSVSQVREGAARFLRLAKDGGPAVILVGHVTKEGFLAGPK
VLEHLVDCVLYLEGERYQAYRILRSVKNRFGSTNEIGVFEMTGSGLQEVTNPSAMLMAERPAGVAGSSVVACLEGTRPLL
LEIQALVSKTAFGNPRRLATGIDFNRALLLAAVLEKRAGLPLGGYDIYLNVAGGIAINEPAADLGICLAIASGLKDRPLE
SRTLVLGEVGLAGEVRAVTQLERRVEEAARLGFNRFIIPAGNRGGLKGQSGCEIYKVSTINEALRLALVNTGSGAGDNTL
SNPFYKYS

Specific function: May play a role in the repair of endogenous alkylation damage [H]

COG id: COG1066

COG function: function code O; Predicted ATP-dependent serine protease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recA family. RadA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790850, Length=452, Percent_Identity=48.0088495575221, Blast_Score=404, Evalue=1e-114,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR014774
- InterPro:   IPR004504
- InterPro:   IPR008269
- InterPro:   IPR020568 [H]

Pfam domain/function: PF06745 KaiC; PF05362 Lon_C [H]

EC number: NA

Molecular weight: Translated: 51903; Mature: 51771

Theoretical pI: Translated: 7.97; Mature: 7.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPPSVNENSGADKSKGAELLTRIKERFVCQQCGYESQGFLGRCPACGSWNSLVAEAIIPE
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
GIKKAAGSGEVPVLLSRVNDISEKRLVTTLGEWDRVLGGGLVPGSLVLVGGAPGIGKSTL
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHH
LLQVAHLLSSRYGKILYVTGEESASQTRLRARRLGAEEGEIYLLAETNIEGILLQIERLQ
HHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCC
PVVVMVDSIQTMLLPDIQAAPGSVSQVREGAARFLRLAKDGGPAVILVGHVTKEGFLAGP
CEEEEEHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCH
KVLEHLVDCVLYLEGERYQAYRILRSVKNRFGSTNEIGVFEMTGSGLQEVTNPSAMLMAE
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHCCCCEEEEEC
RPAGVAGSSVVACLEGTRPLLLEIQALVSKTAFGNPRRLATGIDFNRALLLAAVLEKRAG
CCCCCCCCHHHEECCCCCHHHHHHHHHHHHHCCCCCCCEECCCCHHHHHHHHHHHHHHCC
LPLGGYDIYLNVAGGIAINEPAADLGICLAIASGLKDRPLESRTLVLGEVGLAGEVRAVT
CCCCCEEEEEEEECCEEECCCCHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHH
QLERRVEEAARLGFNRFIIPAGNRGGLKGQSGCEIYKVSTINEALRLALVNTGSGAGDNT
HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEEHHHHHHHEEEEEECCCCCCCCC
LSNPFYKYS
CCCCCCCCC
>Mature Secondary Structure 
PPSVNENSGADKSKGAELLTRIKERFVCQQCGYESQGFLGRCPACGSWNSLVAEAIIPE
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
GIKKAAGSGEVPVLLSRVNDISEKRLVTTLGEWDRVLGGGLVPGSLVLVGGAPGIGKSTL
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHH
LLQVAHLLSSRYGKILYVTGEESASQTRLRARRLGAEEGEIYLLAETNIEGILLQIERLQ
HHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCC
PVVVMVDSIQTMLLPDIQAAPGSVSQVREGAARFLRLAKDGGPAVILVGHVTKEGFLAGP
CEEEEEHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCH
KVLEHLVDCVLYLEGERYQAYRILRSVKNRFGSTNEIGVFEMTGSGLQEVTNPSAMLMAE
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHCCCCEEEEEC
RPAGVAGSSVVACLEGTRPLLLEIQALVSKTAFGNPRRLATGIDFNRALLLAAVLEKRAG
CCCCCCCCHHHEECCCCCHHHHHHHHHHHHHCCCCCCCEECCCCHHHHHHHHHHHHHHCC
LPLGGYDIYLNVAGGIAINEPAADLGICLAIASGLKDRPLESRTLVLGEVGLAGEVRAVT
CCCCCEEEEEEEECCEEECCCCHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHH
QLERRVEEAARLGFNRFIIPAGNRGGLKGQSGCEIYKVSTINEALRLALVNTGSGAGDNT
HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEEHHHHHHHEEEEEECCCCCCCCC
LSNPFYKYS
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377; 8016066 [H]