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The map label for this gene is ykoU [H]

Identifier: 83590896

GI number: 83590896

Start: 2159458

End: 2160396

Strand: Reverse

Name: ykoU [H]

Synonym: Moth_2067

Alternate gene names: 83590896

Gene position: 2160396-2159458 (Counterclockwise)

Preceding gene: 83590897

Following gene: 83590895

Centisome position: 82.18

GC content: 58.36

Gene sequence:

>939_bases
ATGGACCGGGAAATGACAACAGGACAGCAGGTTAACGGGGAGCCCTATATGCTGCCCCGGTTGCCGGGACAGCAGCTCCG
GCTGACCAACCTGGACAAGGTCTTCTGGCCGGAGGGGCTGACCAAGTTTGATCTCGTCGAATATTATGTCGACATGGCCC
CCGGCATCCTACCTTACCTGCGGGAACGTCCCCTGGTCCTGAAGCGCTACCCGGACGGCATTACAGGGGAGGCCTTTTAC
CAGAAAGAGTGCCCTGCCTATGCCCCAGAGTGGGTGGCGACCCTGCCTGTCTATCACACCGATAGCGATAAAACCATCAA
TTACGTTCTCTGCAATAACGAAGCAACCCTGGCCTGGCTGGCCAACCAGGGGTGCATCGAGGTCCATGCCTGGCTCTCCC
GGGCCGGTCGCCTGGAATACCCGGATATCGTTGTCATGGACCTCGACCCTGCGGACGGCACTACCCTTGTCGATGTGCTG
GAAATCGCCCTCTTGGTCAACCGGGCTTTAAAGGAACTCCACCTCACCGGCTACCCCAAAAATTCAGGCGCCAGGGGCCT
GCATATTTTCATCCCCCTTTATCCCCGCTGGACCTTCCGGGAAGTTACGGCTGCCATGGGATACCTGGCGCATCTCATTG
TGCAGGTTTACCCCCGCAAAGCCACCACCGAGCACCTTATCCACAGGCGCCGGGGCAAAGTCTACCTGGATTACCTGCAA
AATGTACAGGGGCGGTCCATGACCTTTCCCTACAGCCTACGGCCCCTGCCCGGGGCCCCGGTTTCCGCCCCCTTGACCTG
GGAAGAAGTGGCGGCGAAAAAGATTTATCCCGGAGATTTCAATATCATCAGGCGCCGCCTGGAAGAATGGGGCGACTTGT
ACCGGGAACTCCTGGAGCGCCCCAATGATTTAACACCCCTGTTAGAGCTGGCCATATAA

Upstream 100 bases:

>100_bases
GATATTAAAAAGCCCCCTGATACGACCCGGCGTATGAACTTTAACCGGGGGTTGGGGATACTACCGGCAGGCCGGCAGGA
CAGGGGGTGGTGGCAGGGAA

Downstream 100 bases:

>100_bases
AGCAGCAGGGTATGCTTAGCTTTGGCAACCGGTAGGTTTATGTTAAAATGAAATAAAGCCGCGGTGAATTATAAGCAAGG
GGGAAGTTAGATGTTGATAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 312

Protein sequence:

>312_residues
MDREMTTGQQVNGEPYMLPRLPGQQLRLTNLDKVFWPEGLTKFDLVEYYVDMAPGILPYLRERPLVLKRYPDGITGEAFY
QKECPAYAPEWVATLPVYHTDSDKTINYVLCNNEATLAWLANQGCIEVHAWLSRAGRLEYPDIVVMDLDPADGTTLVDVL
EIALLVNRALKELHLTGYPKNSGARGLHIFIPLYPRWTFREVTAAMGYLAHLIVQVYPRKATTEHLIHRRRGKVYLDYLQ
NVQGRSMTFPYSLRPLPGAPVSAPLTWEEVAAKKIYPGDFNIIRRRLEEWGDLYRELLERPNDLTPLLELAI

Sequences:

>Translated_312_residues
MDREMTTGQQVNGEPYMLPRLPGQQLRLTNLDKVFWPEGLTKFDLVEYYVDMAPGILPYLRERPLVLKRYPDGITGEAFY
QKECPAYAPEWVATLPVYHTDSDKTINYVLCNNEATLAWLANQGCIEVHAWLSRAGRLEYPDIVVMDLDPADGTTLVDVL
EIALLVNRALKELHLTGYPKNSGARGLHIFIPLYPRWTFREVTAAMGYLAHLIVQVYPRKATTEHLIHRRRGKVYLDYLQ
NVQGRSMTFPYSLRPLPGAPVSAPLTWEEVAAKKIYPGDFNIIRRRLEEWGDLYRELLERPNDLTPLLELAI
>Mature_312_residues
MDREMTTGQQVNGEPYMLPRLPGQQLRLTNLDKVFWPEGLTKFDLVEYYVDMAPGILPYLRERPLVLKRYPDGITGEAFY
QKECPAYAPEWVATLPVYHTDSDKTINYVLCNNEATLAWLANQGCIEVHAWLSRAGRLEYPDIVVMDLDPADGTTLVDVL
EIALLVNRALKELHLTGYPKNSGARGLHIFIPLYPRWTFREVTAAMGYLAHLIVQVYPRKATTEHLIHRRRGKVYLDYLQ
NVQGRSMTFPYSLRPLPGAPVSAPLTWEEVAAKKIYPGDFNIIRRRLEEWGDLYRELLERPNDLTPLLELAI

Specific function: Probably involved in the repair of DNA double-strand breaks by non-homologous-end joining (NHEJ) during spore germination [H]

COG id: COG3285

COG function: function code L; Predicted eukaryotic-type DNA primase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATP-dependent DNA ligase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012310
- InterPro:   IPR014146
- InterPro:   IPR014145
- InterPro:   IPR014143 [H]

Pfam domain/function: PF01068 DNA_ligase_A_M [H]

EC number: =6.5.1.1 [H]

Molecular weight: Translated: 35855; Mature: 35855

Theoretical pI: Translated: 6.41; Mature: 6.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDREMTTGQQVNGEPYMLPRLPGQQLRLTNLDKVFWPEGLTKFDLVEYYVDMAPGILPYL
CCCCCCCCCCCCCCCEEECCCCCCCEEECCCCHHHCCCCCCHHHHHHHHHHHCCCHHHHH
RERPLVLKRYPDGITGEAFYQKECPAYAPEWVATLPVYHTDSDKTINYVLCNNEATLAWL
HCCCEEEEECCCCCCCCHHHHCCCCCCCCCHHEEEEEEECCCCCEEEEEEECCCCEEEEE
ANQGCIEVHAWLSRAGRLEYPDIVVMDLDPADGTTLVDVLEIALLVNRALKELHLTGYPK
CCCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
NSGARGLHIFIPLYPRWTFREVTAAMGYLAHLIVQVYPRKATTEHLIHRRRGKVYLDYLQ
CCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEHHHC
NVQGRSMTFPYSLRPLPGAPVSAPLTWEEVAAKKIYPGDFNIIRRRLEEWGDLYRELLER
CCCCCCEECCEECCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHC
PNDLTPLLELAI
CCCCCHHHHHCC
>Mature Secondary Structure
MDREMTTGQQVNGEPYMLPRLPGQQLRLTNLDKVFWPEGLTKFDLVEYYVDMAPGILPYL
CCCCCCCCCCCCCCCEEECCCCCCCEEECCCCHHHCCCCCCHHHHHHHHHHHCCCHHHHH
RERPLVLKRYPDGITGEAFYQKECPAYAPEWVATLPVYHTDSDKTINYVLCNNEATLAWL
HCCCEEEEECCCCCCCCHHHHCCCCCCCCCHHEEEEEEECCCCCEEEEEEECCCCEEEEE
ANQGCIEVHAWLSRAGRLEYPDIVVMDLDPADGTTLVDVLEIALLVNRALKELHLTGYPK
CCCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
NSGARGLHIFIPLYPRWTFREVTAAMGYLAHLIVQVYPRKATTEHLIHRRRGKVYLDYLQ
CCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEHHHC
NVQGRSMTFPYSLRPLPGAPVSAPLTWEEVAAKKIYPGDFNIIRRRLEEWGDLYRELLER
CCCCCCEECCEECCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHC
PNDLTPLLELAI
CCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]