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The map label for this gene is nrfC [H]

Identifier: 83590741

GI number: 83590741

Start: 1972214

End: 1972900

Strand: Reverse

Name: nrfC [H]

Synonym: Moth_1907

Alternate gene names: 83590741

Gene position: 1972900-1972214 (Counterclockwise)

Preceding gene: 83590742

Following gene: 83590740

Centisome position: 75.05

GC content: 58.95

Gene sequence:

>687_bases
GTGAGACTGGGAATGGTCATCGACCTGGACCGCTGCATCGGCTGCCGTACCTGCGCGGTGGTTTGCAAAGGGCACAACTC
CCAGCCGCCGGGTATGTGGTGGAACCGGGTTTTTACTCCGGGAAGTCCAGAACACCAGCTTCCCGTAGCGCAAAACGGGG
AAGTGGAGATGTATTTCTTACCCGTATCCTGTCAGATGTGTGAAAATGCGCCCTGTGAAAAGGTCTGCCCGGTGGGGGCG
ACCTACACCGACGACCGGGGCCGGGTGCTGGTGGACTATGAGCGCTGTATCGGCTGCCGCTACTGCATGGCCGCCTGTCC
CTACGGCGTGCGCCAGTTCAACTGGGAGGACCAGCAAAAGGCCAAAGCGAAAGCGGGTTATATGCCGGGGTATGATTACG
GCTATCCTTTCGAGCATCGTGACGGCAACGGCCGCCTGGTTTATACGCCGGATCGTCCCAAAGGTATTGTTGAGAAATGT
ACTTTCTGCGTGCAGTATACCGATAAAGGGGAATTACCAGTTTGTGTCCAGGCCTGCCCGGCCGGGGCGCGCTTCTTTGG
CGACCTCGATGAGCCCCGGTCGGAAGTAAGCCGCCTGGTGCGGGAGCGGCAGGCCCTGCGGTTGAAGGAAGAGCTGGGAA
CAAAGCCCAAGGTATATTACCTGCCACCGACAAGACCGCGGAAGTAA

Upstream 100 bases:

>100_bases
TCAAGCCCACCCATGAGGTCTACTTCGTACCGGGGATATGGGCCCCCAATACAGCCTGGAACGAGGCCCTCTGCGATGTA
AGAAAGGCAGGTGAGGTATA

Downstream 100 bases:

>100_bases
AAGGAGGGAGACCTTGTGAGGAAACTAAATATGGCTTTTGTCCCGGGCCTGATTCTTTTGCTGGTAAGTTTATTTACCTG
GGGCTACCAGCTTAAAAACG

Product: 4Fe-4S ferredoxin, iron-sulfur binding

Products: oxidized cytochrome C552; NH3 [C]

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 228

Protein sequence:

>228_residues
MRLGMVIDLDRCIGCRTCAVVCKGHNSQPPGMWWNRVFTPGSPEHQLPVAQNGEVEMYFLPVSCQMCENAPCEKVCPVGA
TYTDDRGRVLVDYERCIGCRYCMAACPYGVRQFNWEDQQKAKAKAGYMPGYDYGYPFEHRDGNGRLVYTPDRPKGIVEKC
TFCVQYTDKGELPVCVQACPAGARFFGDLDEPRSEVSRLVRERQALRLKEELGTKPKVYYLPPTRPRK

Sequences:

>Translated_228_residues
MRLGMVIDLDRCIGCRTCAVVCKGHNSQPPGMWWNRVFTPGSPEHQLPVAQNGEVEMYFLPVSCQMCENAPCEKVCPVGA
TYTDDRGRVLVDYERCIGCRYCMAACPYGVRQFNWEDQQKAKAKAGYMPGYDYGYPFEHRDGNGRLVYTPDRPKGIVEKC
TFCVQYTDKGELPVCVQACPAGARFFGDLDEPRSEVSRLVRERQALRLKEELGTKPKVYYLPPTRPRK
>Mature_228_residues
MRLGMVIDLDRCIGCRTCAVVCKGHNSQPPGMWWNRVFTPGSPEHQLPVAQNGEVEMYFLPVSCQMCENAPCEKVCPVGA
TYTDDRGRVLVDYERCIGCRYCMAACPYGVRQFNWEDQQKAKAKAGYMPGYDYGYPFEHRDGNGRLVYTPDRPKGIVEKC
TFCVQYTDKGELPVCVQACPAGARFFGDLDEPRSEVSRLVRERQALRLKEELGTKPKVYYLPPTRPRK

Specific function: Probably involved in the transfer of electrons from the quinone pool to the type-c cytochromes [H]

COG id: COG0437

COG function: function code C; Fe-S-cluster-containing hydrogenase components 1

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI2367345, Length=224, Percent_Identity=35.7142857142857, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI1787122, Length=227, Percent_Identity=30.8370044052863, Blast_Score=108, Evalue=2e-25,
Organism=Escherichia coli, GI1787872, Length=230, Percent_Identity=30.8695652173913, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI226510944, Length=221, Percent_Identity=31.2217194570136, Blast_Score=101, Evalue=4e-23,
Organism=Escherichia coli, GI1789370, Length=232, Percent_Identity=31.8965517241379, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1787749, Length=214, Percent_Identity=28.0373831775701, Blast_Score=78, Evalue=4e-16,
Organism=Escherichia coli, GI1789067, Length=206, Percent_Identity=31.0679611650485, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1790326, Length=212, Percent_Identity=27.3584905660377, Blast_Score=74, Evalue=7e-15,
Organism=Escherichia coli, GI2367245, Length=123, Percent_Identity=34.1463414634146, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI87082179, Length=184, Percent_Identity=31.5217391304348, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1787963, Length=122, Percent_Identity=27.8688524590164, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1789079, Length=213, Percent_Identity=26.7605633802817, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI87082180, Length=219, Percent_Identity=26.027397260274, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1788811, Length=188, Percent_Identity=26.063829787234, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787740, Length=189, Percent_Identity=30.1587301587302, Blast_Score=62, Evalue=2e-11,
Organism=Escherichia coli, GI1787478, Length=186, Percent_Identity=30.6451612903226, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI87082114, Length=203, Percent_Identity=29.064039408867, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR017567
- InterPro:   IPR006311 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25913; Mature: 25913

Theoretical pI: Translated: 8.11; Mature: 8.11

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

7.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
10.1 %Cys+Met (Translated Protein)
7.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
10.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLGMVIDLDRCIGCRTCAVVCKGHNSQPPGMWWNRVFTPGSPEHQLPVAQNGEVEMYFL
CCCCEEEEHHHHCCHHEEEEEECCCCCCCCCCCHHCEECCCCCCCCCCCCCCCCEEEEEE
PVSCQMCENAPCEKVCPVGATYTDDRGRVLVDYERCIGCRYCMAACPYGVRQFNWEDQQK
ECCHHHCCCCCHHHHCCCCCEEECCCCCEEEEHHHHHHHHHHHHHCCCCHHHCCCCHHHH
AKAKAGYMPGYDYGYPFEHRDGNGRLVYTPDRPKGIVEKCTFCVQYTDKGELPVCVQACP
HHHHCCCCCCCCCCCCCCEECCCCEEEECCCCCCHHHHHCEEEEEECCCCCCCEEEEECC
AGARFFGDLDEPRSEVSRLVRERQALRLKEELGTKPKVYYLPPTRPRK
CCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCC
>Mature Secondary Structure
MRLGMVIDLDRCIGCRTCAVVCKGHNSQPPGMWWNRVFTPGSPEHQLPVAQNGEVEMYFL
CCCCEEEEHHHHCCHHEEEEEECCCCCCCCCCCHHCEECCCCCCCCCCCCCCCCEEEEEE
PVSCQMCENAPCEKVCPVGATYTDDRGRVLVDYERCIGCRYCMAACPYGVRQFNWEDQQK
ECCHHHCCCCCHHHHCCCCCEEECCCCCEEEEHHHHHHHHHHHHHCCCCHHHCCCCHHHH
AKAKAGYMPGYDYGYPFEHRDGNGRLVYTPDRPKGIVEKCTFCVQYTDKGELPVCVQACP
HHHHCCCCCCCCCCCCCCEECCCCEEEECCCCCCHHHHHCEEEEEECCCCCCCEEEEECC
AGARFFGDLDEPRSEVSRLVRERQALRLKEELGTKPKVYYLPPTRPRK
CCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: reduced cytochrome C552; nitrite [C]

Specific reaction: reduced cytochrome C552 + nitrite = oxidized cytochrome C552 + NH3 [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]