Click here to switch to the map view.

The map label for this gene is ygeV [C]

Identifier: 83590723

GI number: 83590723

Start: 1952445

End: 1954703

Strand: Reverse

Name: ygeV [C]

Synonym: Moth_1889

Alternate gene names: 83590723

Gene position: 1954703-1952445 (Counterclockwise)

Preceding gene: 83590724

Following gene: 83590715

Centisome position: 74.36

GC content: 56.88

Gene sequence:

>2259_bases
ATGGGCGGGATAGTCAACACTGCTACTGGAAGGTGCCGTCAGTGCTATTCCTGTGTCCGCAATTGCCCGGTCAAGGCCAT
CAGAATAAACAAGGGCCAGGCGGAGGTTATCGCCGAACGCTGCATCAGCTGCGGCATGTGCCTGGCTTTTTGCTCCCAGG
GGGCCAAACAGGTAGCCGGCAGCCAGGCGGCCGTCCTGGCAGCGTTAAAGGAGCACCAGGAGATGGTAGCCTGCCTGGCG
CCGTCATTTCCAGCGGCTTTTCCTGGTTGGACCGCCGGCCAGGTGGCCGGCGCCCTGAAGAAACTTGGTTTTGCCCGGGT
ATGGGAGGTGGCCGTGGGGGCGCTGCTGGTTGCCAGGGAGTATCAAAGGGTGCTAAAACAGAGGAATACTCCCGCCATCA
GTACGGCCTGCTATGCGGTGGTCAATCTGGTCGAGAGGCACTTCCCGTCCCTCATTCCTTACCTGTTACCGGTAGTCTCC
CCCTCCATAGCCCTGGGAAGGCTTCTTAAAAAACACCTGGGTCCCGTGAAAGTGGCTTTTATCGGCCCCTGTATCGCTAA
AAAAGAAGAGATTCTGGATCCGGAGGTAGCCGGCGCTGTAGATTATGTACTGACATTTGCGGAAATTAAGGAGTTACTTG
CCGTTGAGCATCTGGAACATCCCGGGGTTGCGGCAGCCCTGGACAGCCCGCCGGTGGCAGTCAGCCGGCTTTTTCCCCTG
CCCGGGGGACTCAGCCGGAGCATGGGCGCGATCCCGGATATTGCCGACCAGGATCTTTTGCTGGTTGAAGGGAAAGAAGG
TGTGCTGGCGGCCCTGGAGGGCCTGGCACGGGGGGAGATCCGGCCCCGCTTAATCGACGCCCTTTTTTGCGAAGGCTGCG
TCATGGGTCCCGGAATGGGTGTTGTGGTCAACCAGGTAAAGAGAAAGGAGCTGGTAGCCGCCTACTACCGCCGCTGTCAG
GAGGCGCGCGAGCCGGAAATCCTAGCCCCCGACCTGGCGCGGAGCTTTCACAATAAACAATCGTCCCTGCCCCTCCCCGG
CGAGGAAGATATTAAACGCATCTTACGGCTGACCAACAAATTTACGCCGGCCGATGAACTGAACTGTGGCGCCTGCGGCT
ATCACTCCTGCCGGGAGAAAGCCATAGCCGTTTACCAGGGCCTGGCGGAGATCGATATGTGCCTGCCCTATCTCCTGGAA
CAGAAGAGCGACCTGCTGTCCCGGGCGGCCAGCAACCTGATGCATTTCGTCAATCTATATAAAAGTCCCGGCGACAGGCC
CGGCCCCGGGGTCATGGAATTGCTCCAGGAAAGAAACATTATTGTCGCCAGCCCGCGGATGTTAAGGGTCCTCTACCTGG
CGGAACGGGTAGCCAGGGTGGATTCCACGGTGTTAATCCTGGGGGAATCCGGCGTCGGTAAGGAAGTAGTCGCCCGCCTG
ATCCATGCCTTAAGCGAGCGCGGCAAGGGGCCGTTTGTGAAAATAAACTGCGGCGCTATTCCGGAAAACCTGCTGGAATC
CGAGCTTTTTGGCTACGAACGGGGGGCTTTTACCGGGGCCAACCGGGAGGGAAAGATGGGCCAGCTGGAGTTGGGCGAGG
GGGGAACGGTATTCCTGGACGAAATCGCTGAACTCCCCTTAAAGCTACAGGTTAAGCTCCTGCAGGTCTTACAGGAGCAG
CGCCTGGTACGGGTGGGGGGGATCAGGGAGATCAAACTCAATATTCGCATTATCTCGGCGACCAATAAAAACCTCTTGCA
GATGGTCCGGGAAGGGACCTTCCGGGAGGATCTGTATTACCGCCTGAATGTAATCCCCCTGACCATCCCCCCTTTACGGG
AACGGCCGGAAGATATCGAAGCCCTCATCGACCATTTTATGGACCGGCTGAACCGGCGTTACAAGCAAGAAAAAAGGATT
AGCCGCCGGGCCAGGAGGTATCTCCTGGCCTATCCCTGGCCCGGCAATGTAAGGGAACTCCATAACGTCATCGAGCAGCT
TTTCGTCCTGGTAGAAGGGACGGAGATTCTACCTGAGCATTTACCCTATTATATCCGCGACGACCCGGCGAGATATAGCT
CCCATATGCTGGTAAAAGATATTATACCCATGAAAGAAGCCATTGAAGAGGTTGAAAAACAGTTGCTGTTAAAGGCCCTG
GAAAAGTACAGGAGCACTTACCAGGTTGCCGAAAAGCTGGGGGTAAACCAGTCGACTGTAGTGCGCAAAATCAAAAAGTA
CGGGCTGGAGCATCAATAA

Upstream 100 bases:

>100_bases
AATAGAATTATGAAGGTTGTTTTTCTTTGGGAAAAAGGTTAAACTGGAAGTAAAGTAACTCCAGTTATCACCCTGGTATT
AGCCTTCGGGAGGCGGCAGC

Downstream 100 bases:

>100_bases
TCCCGGCGGTGAATTACTTGGGCCAGAGTTTTCCGGCCAGCTCTTCCAGGCCCAGGGCCTCGGTCCAACTGACGGCCGCA
AAGCCTTTTTCCGTCTTAAT

Product: sigma-54 dependent trancsriptional regulator

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 752; Mature: 751

Protein sequence:

>752_residues
MGGIVNTATGRCRQCYSCVRNCPVKAIRINKGQAEVIAERCISCGMCLAFCSQGAKQVAGSQAAVLAALKEHQEMVACLA
PSFPAAFPGWTAGQVAGALKKLGFARVWEVAVGALLVAREYQRVLKQRNTPAISTACYAVVNLVERHFPSLIPYLLPVVS
PSIALGRLLKKHLGPVKVAFIGPCIAKKEEILDPEVAGAVDYVLTFAEIKELLAVEHLEHPGVAAALDSPPVAVSRLFPL
PGGLSRSMGAIPDIADQDLLLVEGKEGVLAALEGLARGEIRPRLIDALFCEGCVMGPGMGVVVNQVKRKELVAAYYRRCQ
EAREPEILAPDLARSFHNKQSSLPLPGEEDIKRILRLTNKFTPADELNCGACGYHSCREKAIAVYQGLAEIDMCLPYLLE
QKSDLLSRAASNLMHFVNLYKSPGDRPGPGVMELLQERNIIVASPRMLRVLYLAERVARVDSTVLILGESGVGKEVVARL
IHALSERGKGPFVKINCGAIPENLLESELFGYERGAFTGANREGKMGQLELGEGGTVFLDEIAELPLKLQVKLLQVLQEQ
RLVRVGGIREIKLNIRIISATNKNLLQMVREGTFREDLYYRLNVIPLTIPPLRERPEDIEALIDHFMDRLNRRYKQEKRI
SRRARRYLLAYPWPGNVRELHNVIEQLFVLVEGTEILPEHLPYYIRDDPARYSSHMLVKDIIPMKEAIEEVEKQLLLKAL
EKYRSTYQVAEKLGVNQSTVVRKIKKYGLEHQ

Sequences:

>Translated_752_residues
MGGIVNTATGRCRQCYSCVRNCPVKAIRINKGQAEVIAERCISCGMCLAFCSQGAKQVAGSQAAVLAALKEHQEMVACLA
PSFPAAFPGWTAGQVAGALKKLGFARVWEVAVGALLVAREYQRVLKQRNTPAISTACYAVVNLVERHFPSLIPYLLPVVS
PSIALGRLLKKHLGPVKVAFIGPCIAKKEEILDPEVAGAVDYVLTFAEIKELLAVEHLEHPGVAAALDSPPVAVSRLFPL
PGGLSRSMGAIPDIADQDLLLVEGKEGVLAALEGLARGEIRPRLIDALFCEGCVMGPGMGVVVNQVKRKELVAAYYRRCQ
EAREPEILAPDLARSFHNKQSSLPLPGEEDIKRILRLTNKFTPADELNCGACGYHSCREKAIAVYQGLAEIDMCLPYLLE
QKSDLLSRAASNLMHFVNLYKSPGDRPGPGVMELLQERNIIVASPRMLRVLYLAERVARVDSTVLILGESGVGKEVVARL
IHALSERGKGPFVKINCGAIPENLLESELFGYERGAFTGANREGKMGQLELGEGGTVFLDEIAELPLKLQVKLLQVLQEQ
RLVRVGGIREIKLNIRIISATNKNLLQMVREGTFREDLYYRLNVIPLTIPPLRERPEDIEALIDHFMDRLNRRYKQEKRI
SRRARRYLLAYPWPGNVRELHNVIEQLFVLVEGTEILPEHLPYYIRDDPARYSSHMLVKDIIPMKEAIEEVEKQLLLKAL
EKYRSTYQVAEKLGVNQSTVVRKIKKYGLEHQ
>Mature_751_residues
GGIVNTATGRCRQCYSCVRNCPVKAIRINKGQAEVIAERCISCGMCLAFCSQGAKQVAGSQAAVLAALKEHQEMVACLAP
SFPAAFPGWTAGQVAGALKKLGFARVWEVAVGALLVAREYQRVLKQRNTPAISTACYAVVNLVERHFPSLIPYLLPVVSP
SIALGRLLKKHLGPVKVAFIGPCIAKKEEILDPEVAGAVDYVLTFAEIKELLAVEHLEHPGVAAALDSPPVAVSRLFPLP
GGLSRSMGAIPDIADQDLLLVEGKEGVLAALEGLARGEIRPRLIDALFCEGCVMGPGMGVVVNQVKRKELVAAYYRRCQE
AREPEILAPDLARSFHNKQSSLPLPGEEDIKRILRLTNKFTPADELNCGACGYHSCREKAIAVYQGLAEIDMCLPYLLEQ
KSDLLSRAASNLMHFVNLYKSPGDRPGPGVMELLQERNIIVASPRMLRVLYLAERVARVDSTVLILGESGVGKEVVARLI
HALSERGKGPFVKINCGAIPENLLESELFGYERGAFTGANREGKMGQLELGEGGTVFLDEIAELPLKLQVKLLQVLQEQR
LVRVGGIREIKLNIRIISATNKNLLQMVREGTFREDLYYRLNVIPLTIPPLRERPEDIEALIDHFMDRLNRRYKQEKRIS
RRARRYLLAYPWPGNVRELHNVIEQLFVLVEGTEILPEHLPYYIRDDPARYSSHMLVKDIIPMKEAIEEVEKQLLLKALE
KYRSTYQVAEKLGVNQSTVVRKIKKYGLEHQ

Specific function: Unknown

COG id: COG3829

COG function: function code KT; Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1789233, Length=320, Percent_Identity=46.5625, Blast_Score=267, Evalue=2e-72,
Organism=Escherichia coli, GI1788550, Length=319, Percent_Identity=45.4545454545455, Blast_Score=266, Evalue=4e-72,
Organism=Escherichia coli, GI87082117, Length=323, Percent_Identity=44.8916408668731, Blast_Score=263, Evalue=5e-71,
Organism=Escherichia coli, GI1790299, Length=398, Percent_Identity=38.1909547738693, Blast_Score=241, Evalue=2e-64,
Organism=Escherichia coli, GI1789087, Length=317, Percent_Identity=44.1640378548896, Blast_Score=240, Evalue=3e-64,
Organism=Escherichia coli, GI1788905, Length=259, Percent_Identity=50.965250965251, Blast_Score=235, Evalue=9e-63,
Organism=Escherichia coli, GI1790437, Length=307, Percent_Identity=43.6482084690554, Blast_Score=234, Evalue=2e-62,
Organism=Escherichia coli, GI1786524, Length=326, Percent_Identity=39.8773006134969, Blast_Score=211, Evalue=2e-55,
Organism=Escherichia coli, GI1787583, Length=318, Percent_Identity=36.4779874213836, Blast_Score=206, Evalue=3e-54,
Organism=Escherichia coli, GI87081872, Length=242, Percent_Identity=45.8677685950413, Blast_Score=201, Evalue=1e-52,
Organism=Escherichia coli, GI87082152, Length=336, Percent_Identity=38.9880952380952, Blast_Score=201, Evalue=2e-52,
Organism=Escherichia coli, GI87081858, Length=315, Percent_Identity=32.6984126984127, Blast_Score=169, Evalue=5e-43,
Organism=Escherichia coli, GI1789828, Length=247, Percent_Identity=35.6275303643725, Blast_Score=145, Evalue=1e-35,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR002078 [H]

Pfam domain/function: PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 83413; Mature: 83282

Theoretical pI: Translated: 8.60; Mature: 8.60

Prosite motif: PS00675 SIGMA54_INTERACT_1 ; PS00688 SIGMA54_INTERACT_3 ; PS50045 SIGMA54_INTERACT_4 ; PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGGIVNTATGRCRQCYSCVRNCPVKAIRINKGQAEVIAERCISCGMCLAFCSQGAKQVAG
CCCCCCCCCHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCHHHHHC
SQAAVLAALKEHQEMVACLAPSFPAAFPGWTAGQVAGALKKLGFARVWEVAVGALLVARE
CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YQRVLKQRNTPAISTACYAVVNLVERHFPSLIPYLLPVVSPSIALGRLLKKHLGPVKVAF
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCEEEEE
IGPCIAKKEEILDPEVAGAVDYVLTFAEIKELLAVEHLEHPGVAAALDSPPVAVSRLFPL
CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHCCC
PGGLSRSMGAIPDIADQDLLLVEGKEGVLAALEGLARGEIRPRLIDALFCEGCVMGPGMG
CCCCCHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCH
VVVNQVKRKELVAAYYRRCQEAREPEILAPDLARSFHNKQSSLPLPGEEDIKRILRLTNK
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHC
FTPADELNCGACGYHSCREKAIAVYQGLAEIDMCLPYLLEQKSDLLSRAASNLMHFVNLY
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KSPGDRPGPGVMELLQERNIIVASPRMLRVLYLAERVARVDSTVLILGESGVGKEVVARL
HCCCCCCCCHHHHHHHHCCEEEECHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHH
IHALSERGKGPFVKINCGAIPENLLESELFGYERGAFTGANREGKMGQLELGEGGTVFLD
HHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCHHH
EIAELPLKLQVKLLQVLQEQRLVRVGGIREIKLNIRIISATNKNLLQMVREGTFREDLYY
HHHHCCHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEEEECCCHHHHHHHHCCCHHHHHEE
RLNVIPLTIPPLRERPEDIEALIDHFMDRLNRRYKQEKRISRRARRYLLAYPWPGNVREL
EEEEEEEECCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEECCCCCCHHHH
HNVIEQLFVLVEGTEILPEHLPYYIRDDPARYSSHMLVKDIIPMKEAIEEVEKQLLLKAL
HHHHHHHHHHHCCCHHHHHHCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EKYRSTYQVAEKLGVNQSTVVRKIKKYGLEHQ
HHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
GGIVNTATGRCRQCYSCVRNCPVKAIRINKGQAEVIAERCISCGMCLAFCSQGAKQVAG
CCCCCCCCHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCHHHHHC
SQAAVLAALKEHQEMVACLAPSFPAAFPGWTAGQVAGALKKLGFARVWEVAVGALLVARE
CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YQRVLKQRNTPAISTACYAVVNLVERHFPSLIPYLLPVVSPSIALGRLLKKHLGPVKVAF
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCEEEEE
IGPCIAKKEEILDPEVAGAVDYVLTFAEIKELLAVEHLEHPGVAAALDSPPVAVSRLFPL
CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHCCC
PGGLSRSMGAIPDIADQDLLLVEGKEGVLAALEGLARGEIRPRLIDALFCEGCVMGPGMG
CCCCCHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCH
VVVNQVKRKELVAAYYRRCQEAREPEILAPDLARSFHNKQSSLPLPGEEDIKRILRLTNK
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHC
FTPADELNCGACGYHSCREKAIAVYQGLAEIDMCLPYLLEQKSDLLSRAASNLMHFVNLY
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KSPGDRPGPGVMELLQERNIIVASPRMLRVLYLAERVARVDSTVLILGESGVGKEVVARL
HCCCCCCCCHHHHHHHHCCEEEECHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHH
IHALSERGKGPFVKINCGAIPENLLESELFGYERGAFTGANREGKMGQLELGEGGTVFLD
HHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCHHH
EIAELPLKLQVKLLQVLQEQRLVRVGGIREIKLNIRIISATNKNLLQMVREGTFREDLYY
HHHHCCHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEEEECCCHHHHHHHHCCCHHHHHEE
RLNVIPLTIPPLRERPEDIEALIDHFMDRLNRRYKQEKRISRRARRYLLAYPWPGNVREL
EEEEEEEECCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEECCCCCCHHHH
HNVIEQLFVLVEGTEILPEHLPYYIRDDPARYSSHMLVKDIIPMKEAIEEVEKQLLLKAL
HHHHHHHHHHHCCCHHHHHHCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EKYRSTYQVAEKLGVNQSTVVRKIKKYGLEHQ
HHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1732229 [H]