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The map label for this gene is rpoE [H]

Identifier: 83590677

GI number: 83590677

Start: 1901320

End: 1901934

Strand: Reverse

Name: rpoE [H]

Synonym: Moth_1843

Alternate gene names: 83590677

Gene position: 1901934-1901320 (Counterclockwise)

Preceding gene: 83590678

Following gene: 83590676

Centisome position: 72.35

GC content: 58.7

Gene sequence:

>615_bases
ATGCCATCCGATGAGGAGTTGCTGGCCCGCAGCAGGGACGGTGACGCTGAGGCCTTTGCCCTCCTGGTGGAACGCTACCA
GCGGATGCTCTTTACCATAGCCTACCGTTTCCTGGGCAATACCGAGGATGCCGGCGACGCGGCCCAGGAAGCCTTGGTGC
GCGCCTTTAAAAACCTGGCGGCCTTTCGCGGCCAGTGTTCCTTTAAGACCTGGTTACAGCACATTATCGCCAATGTCTGC
CGCGATGAGCTGCGCCGCCTGAAACGGCGACCCACCCTTTCCTTAGACAACCTCCTGGAAACCGGCGGTGGGTTCCGGGA
ACTATCAGCTGGCAAGGTTACCTCGCCGGAAGAGGTTTTCTTGACCAGGGAAGGGGAGGACCGGTTACATAGACTTATCC
AAGCCCTGACGCCGGAATATCGGGTGGTTGTTATTATGAGAGACCTCCAGGGTTTCAGTTACGAAGAGATAGCCAGCCAC
CTGGGTTGCCCCGTGGGGACCGTAAAATCCCGCCTTAGCCGGGCGCGCCATTTTCTACGGCAGCACCTGGTACAGGAACG
GGAACATGTAGCCGGTCTCGGCGTCTATATGGCTAAAGGGGGTGAGGGGCGTTGA

Upstream 100 bases:

>100_bases
TGCTTTCATTTTAACACAGGCTTTATATTCTTGCAAGGCCTAAAGGATAAAGGTCAGGGGGTGTCGAATAGGAAAAGTAC
TGGAAAGGAGCGGGTACGCC

Downstream 100 bases:

>100_bases
ATTGCAGTCAGTGCCGGGAACTCATATCACCATACCTGGATGGAGTCTTGAGCGAAACAATACAACGGGCCCTGGAGAAC
CACCTTAACTCCTGCCCGGC

Product: sigma-24 (FecI-like)

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 204; Mature: 203

Protein sequence:

>204_residues
MPSDEELLARSRDGDAEAFALLVERYQRMLFTIAYRFLGNTEDAGDAAQEALVRAFKNLAAFRGQCSFKTWLQHIIANVC
RDELRRLKRRPTLSLDNLLETGGGFRELSAGKVTSPEEVFLTREGEDRLHRLIQALTPEYRVVVIMRDLQGFSYEEIASH
LGCPVGTVKSRLSRARHFLRQHLVQEREHVAGLGVYMAKGGEGR

Sequences:

>Translated_204_residues
MPSDEELLARSRDGDAEAFALLVERYQRMLFTIAYRFLGNTEDAGDAAQEALVRAFKNLAAFRGQCSFKTWLQHIIANVC
RDELRRLKRRPTLSLDNLLETGGGFRELSAGKVTSPEEVFLTREGEDRLHRLIQALTPEYRVVVIMRDLQGFSYEEIASH
LGCPVGTVKSRLSRARHFLRQHLVQEREHVAGLGVYMAKGGEGR
>Mature_203_residues
PSDEELLARSRDGDAEAFALLVERYQRMLFTIAYRFLGNTEDAGDAAQEALVRAFKNLAAFRGQCSFKTWLQHIIANVCR
DELRRLKRRPTLSLDNLLETGGGFRELSAGKVTSPEEVFLTREGEDRLHRLIQALTPEYRVVVIMRDLQGFSYEEIASHL
GCPVGTVKSRLSRARHFLRQHLVQEREHVAGLGVYMAKGGEGR

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=180, Percent_Identity=38.3333333333333, Blast_Score=125, Evalue=2e-30,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR014286
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 23134; Mature: 23003

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSDEELLARSRDGDAEAFALLVERYQRMLFTIAYRFLGNTEDAGDAAQEALVRAFKNLA
CCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
AFRGQCSFKTWLQHIIANVCRDELRRLKRRPTLSLDNLLETGGGFRELSAGKVTSPEEVF
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCHHCCCCCCCCCHHHE
LTREGEDRLHRLIQALTPEYRVVVIMRDLQGFSYEEIASHLGCPVGTVKSRLSRARHFLR
EECCCHHHHHHHHHHHCCCCEEEEEEHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
QHLVQEREHVAGLGVYMAKGGEGR
HHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
PSDEELLARSRDGDAEAFALLVERYQRMLFTIAYRFLGNTEDAGDAAQEALVRAFKNLA
CCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
AFRGQCSFKTWLQHIIANVCRDELRRLKRRPTLSLDNLLETGGGFRELSAGKVTSPEEVF
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCHHCCCCCCCCCHHHE
LTREGEDRLHRLIQALTPEYRVVVIMRDLQGFSYEEIASHLGCPVGTVKSRLSRARHFLR
EECCCHHHHHHHHHHHCCCCEEEEEEHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
QHLVQEREHVAGLGVYMAKGGEGR
HHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]