Click here to switch to the map view.

The map label for this gene is ccdA [H]

Identifier: 83590664

GI number: 83590664

Start: 1888273

End: 1888956

Strand: Reverse

Name: ccdA [H]

Synonym: Moth_1830

Alternate gene names: 83590664

Gene position: 1888956-1888273 (Counterclockwise)

Preceding gene: 83590667

Following gene: 83590663

Centisome position: 71.86

GC content: 57.89

Gene sequence:

>684_bases
GTGGTCGACGTATCCCTGGTCATAGCCTTCGGTGCCGGCTTGCTCTCCTTCTTTTCTCCCTGCATTATACCCCTCTTACC
GGCATACTTTACTTATCTCGGCGGTTCGGCTGTAGCCAGCGGCCAGGTACAGGACCTGGGCCGCTCCTTCTTAGCCGGGC
GGGCGGCCCTTTTTACGGCCGGTTTTGCCCTGATTTTTATTCTCCTGGGGGCCTCGGCAGGGGGCCTGGGTTACGTTCTC
CAGGCCTACCGGCCGGTGCTGAACCGTCTCGGTGGAATTTTAATAATAATATTCGGTATGCAGGTGGCCGGAATTGGGCG
TATACCCTTCCTGGCCCGGGAGAAAAAGTGGGAGCTCAGGCCCCGCACCCCCGGGGCGGCAGCTTCCTTTCTCCTGGGGA
TGGCCTTCGCCGCCGGCTGGACTCCCTGCATTGGCCCGGTCCTGGGCTCTATTTTAATTTATGCCGGCAGCCAGGCCACC
CTTCTCCGGGGAATGCTGCTCCTGGCGGTCTATTCCCTGGGCCTGGCCGTACCCTTCCTGCTGGCTGCCCTGTTCCTGGG
ACCGGTTTTATACTCCCTGCGGAAGTTTTCCCGTTATTTGCCGCAAATATCCCTGATAAGCGGTATTATTCTTGTCGTTA
TGGGGGTTCTGGTCTTTTTGGGCCGTTTGAACACCTTTATTTAA

Upstream 100 bases:

>100_bases
AGGTCGCTATTGCTGGTTCTAAGCGCCTGGTCCTCTTGATGGCTGTATTATATTGACGGCGAAATTATAAAAATAGTATA
ATCAAAAAGAGGTGTTTCCT

Downstream 100 bases:

>100_bases
GACTGGAGGAATGTCACTATGCAACCTAAATGGCGGGTGCCATTGCTGATTATCCTGCTCATGGTTGCCGTCCTGGCCCT
TGCCTTTTTCCTGCCGCACC

Product: cytochrome c biogenesis protein, transmembrane region

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 227

Protein sequence:

>227_residues
MVDVSLVIAFGAGLLSFFSPCIIPLLPAYFTYLGGSAVASGQVQDLGRSFLAGRAALFTAGFALIFILLGASAGGLGYVL
QAYRPVLNRLGGILIIIFGMQVAGIGRIPFLAREKKWELRPRTPGAAASFLLGMAFAAGWTPCIGPVLGSILIYAGSQAT
LLRGMLLLAVYSLGLAVPFLLAALFLGPVLYSLRKFSRYLPQISLISGIILVVMGVLVFLGRLNTFI

Sequences:

>Translated_227_residues
MVDVSLVIAFGAGLLSFFSPCIIPLLPAYFTYLGGSAVASGQVQDLGRSFLAGRAALFTAGFALIFILLGASAGGLGYVL
QAYRPVLNRLGGILIIIFGMQVAGIGRIPFLAREKKWELRPRTPGAAASFLLGMAFAAGWTPCIGPVLGSILIYAGSQAT
LLRGMLLLAVYSLGLAVPFLLAALFLGPVLYSLRKFSRYLPQISLISGIILVVMGVLVFLGRLNTFI
>Mature_227_residues
MVDVSLVIAFGAGLLSFFSPCIIPLLPAYFTYLGGSAVASGQVQDLGRSFLAGRAALFTAGFALIFILLGASAGGLGYVL
QAYRPVLNRLGGILIIIFGMQVAGIGRIPFLAREKKWELRPRTPGAAASFLLGMAFAAGWTPCIGPVLGSILIYAGSQAT
LLRGMLLLAVYSLGLAVPFLLAALFLGPVLYSLRKFSRYLPQISLISGIILVVMGVLVFLGRLNTFI

Specific function: Required for cytochrome c synthesis and stage V of sporulation. Might transfer reducing equivalents across the cytoplasmic membrane, promoting efficient disulfide bond isomerization of proteins localized on the outer surface of the membrane or in the spor

COG id: COG0785

COG function: function code O; Cytochrome c biogenesis protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DsbD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003834 [H]

Pfam domain/function: PF02683 DsbD [H]

EC number: NA

Molecular weight: Translated: 23945; Mature: 23945

Theoretical pI: Translated: 10.72; Mature: 10.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVDVSLVIAFGAGLLSFFSPCIIPLLPAYFTYLGGSAVASGQVQDLGRSFLAGRAALFTA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHH
GFALIFILLGASAGGLGYVLQAYRPVLNRLGGILIIIFGMQVAGIGRIPFLAREKKWELR
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCC
PRTPGAAASFLLGMAFAAGWTPCIGPVLGSILIYAGSQATLLRGMLLLAVYSLGLAVPFL
CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
LAALFLGPVLYSLRKFSRYLPQISLISGIILVVMGVLVFLGRLNTFI
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MVDVSLVIAFGAGLLSFFSPCIIPLLPAYFTYLGGSAVASGQVQDLGRSFLAGRAALFTA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHH
GFALIFILLGASAGGLGYVLQAYRPVLNRLGGILIIIFGMQVAGIGRIPFLAREKKWELR
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCC
PRTPGAAASFLLGMAFAAGWTPCIGPVLGSILIYAGSQATLLRGMLLLAVYSLGLAVPFL
CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
LAALFLGPVLYSLRKFSRYLPQISLISGIILVVMGVLVFLGRLNTFI
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]