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The map label for this gene is ygcB [C]

Identifier: 83590564

GI number: 83590564

Start: 1777548

End: 1780301

Strand: Reverse

Name: ygcB [C]

Synonym: Moth_1729

Alternate gene names: 83590564

Gene position: 1780301-1777548 (Counterclockwise)

Preceding gene: 83590565

Following gene: 83590563

Centisome position: 67.72

GC content: 52.65

Gene sequence:

>2754_bases
ATGGCTGATTTCTGGGCTAAAAGTAATGGCATTTCTTTAAGCAAGCACACCGGGGACGTGCTGGCGGCGACCGGGGTTCT
TCAAAAGAAACTGGGTAATAAGGTCCCCGGCGACTGGTGGCTGGGTTTAAAGTATGCCGCCCTGCTCCATGACTCAGGTA
AAGTTGATCCCGCTTTTCAGGAGCGCATAAAAAAGCAGGGCCAAAAGGCGGGGGACGTCCCGGCAGACGAACCAAAATAT
AAAGATATCCCTCACAGCATCCTTTCTCTGTTTTTCGTTAGGCCGGAGAACTTTACTTTTTCCCAGCCCTACTTGGCCTA
TGCGGTTATATCGGCCATTGTTTTTCATCACTGGCGCGAGAGCTTTCCTGACTACTTCCTGGGCAGCCAGGAATATCTCA
TCAGGAAAAAGGCCGGGGAACTGGAGGAAAGGGCGGCTTTATGGAACCGGTTGAGCCGGGATTTAGTCGCCGAGCTTACC
ATTCTGGCGGAAAAGTACGAACTGGATCCGGCCGTGATGGGCCTTAACACCACCTTGACGGAGTATCTACGTTACAATAC
CCTCGGTTCGGCCGGGCTCCTCATCCCGCCTTATACCCTGGTTTATCTTCCAGAACAGATCAGGGCCAAAGCCGCCCGGG
GAGATGAAAAAGATAGAGCCAGGGTTTTTATTGCCGGCAATCTCATGCGCGCCGACCACTTTGCCTCAATGGTAGAAGAA
AGCAACACCGGCTTGCAGATTGACGCCATCGAAAGCGGCCGGGTTTTCACTACCGGTGAAATTGAAAGGACCTTAAAGGA
AAAATTCAATACACCGGACTACTGGCAAAAGCAGTTCTTTCAAAACCATAAGGAGGCAAAAGGTGACAACCTGGTGCTGG
TGGCACCGACGGGATTCGGCAAGACCGAGTTTGCCTTCCTCTGGGGGGCGGAAAAGAAAAACTTTATCCTCCTGCCCATG
CGGGCGGCCGTCAATAAGATATGGGAACGCACCAGGGATATGGTTGAGAGCCTGGGGGAAAAAGGCGACGATCAGGTGGC
CCTGTTGCACAGCGATGCCGCCCTGGAGACTTTTAGCCGCTACCAGCAGCAGGGCGACCTTGAAAGCGAGAGCAATACCC
GCAAAGCCATGGAGCTGGCCCGCCACCTGGCCCGGACTTATATTATAGCCACTGCCGATCAGGTCGCCCCGGCGGCTTTG
AGGTATCCTGGCTATGAACGGATCTTTGCTGCCCTTATGAACGGGGCCCTGGTTATTGATGAAGTCCAGGCCTATGATCC
CCGCGCGGCGGCAATCATCACCCACCTGGTACAGCAAAATGCCTATCTCGGTGGCAACAATTTGATTATGACCGCAACCC
TGCCGCCTTTCATCAGCCGGGAGCTGGTCAAACGCCTGGGGCTGGCCGACCATCAGGTTATACGCCTGATTGATGAGCCG
GAGTTCGAAGGGGTGGCTGCTTCTTGCCGGCATCGGCTGGGATTTAACGTCCATGCAGGCGATTATGCCAGCGCTGTAAC
GGCTATTATCCGGGCAGCTCAACAGGGTAAAAAGGTCCTGGTAGTGATGAATACCGTCAGGGCCGCCTGTGAGATCTACG
ACAAAATTATGGCGGTACTCCAGCAGGAGCAACTGGCTATTGAAACACTCCTTCTTCATTCGCGCTTTATCCTTAAACAG
AAAGAAGAGCTGGAAAAAGCGGTGGTCGAAAAATATATGCCCAACCGGCCGGACAGGGATGCCGGTCCCTGTATAGTTGT
AGCCACCCAGATTGTTGAAGCTTCCCTGGATATTGACGCGGACGTACTTTTTACCGAGCCTTCCCCGGCCGACAGCCTGA
TCCAGCGGATGGGCCGCGTTTTTCGTCGGTTTGCCCGCCTGACGGGTAACAATGCTCCCCCGGAGGCCAACGTCATAATT
ATAATCAATGGAGGGGATCAACCCCTCAATCGCCGCCGGCGTTCAGACCAGGAAGAAAAAACTGCCGGTGACGTCCAACT
GGCATCCGGCTTAAAAACAGTCTATAACCGGGACCTGACGGCCCTCTCCCTGGTAATCCTGCTCATGGCCTTAAAGGGCG
AAGCCGGCCTCAGCCCGGGCAGCAGCCTGGCGGAAGAACTAAAACGGAAACCATGGGTTGATTGTTTTAAGAAAAGCAAG
GGTAAGGGGAACTCCGGGAACACGAACAGGCGCCTGGTGGAAGTTATTAAATCAATAACAGGACAAACCTTGCTTTTAAC
TGAAAAGGAAAAAATGGATTGGGTGGAGCTCACCTATGGTATCCTTGATGAACTACGGCGGATAGACAACTATCCCCTCC
AACTGGAAGACTACATTCAGAAGTATGAAGAAACCTTGGCAATCCTAGATCATGGCTACTGCTCGGATCGCAAAAGGGAT
GCGGAAAGGCTTTTTCGAGATATAAATGCCATAACCGGTGTTCCCATAGAAAAGGCCGGTGAATTCTATGACAGCATCCG
AACGTGGCTGAGCGGCAAAAACGCGGGAAGCTTAAATTTCTTGGAACTGGCCCTGGCCATCCTGCCGCGGTTTACCGTTA
ACTGCCCTTTTCTCGCGACGTCCAACGGGGAAAGGGTGCGGGACCTGGATTTTGAAGCCATGCTCCCCCCGGAGCTTGAC
ATCAAAAGCATTACTAAAATCAGATCCAGGCTGGAAAGATGGCTAAAGGGTATATACATCCTCGATTTGCCCTATGATCA
GGTTAAAGGGTTAGAGGTGCAAAATGAACAGTGA

Upstream 100 bases:

>100_bases
TGGACAACTTTCGTTTGCCATCCCTGCTGGTCGACAGGGAACTGAAAACGCCGGTTTATATGGCCGCGATAAACCAGGAA
CCGGGAAAGGAGGGGCGGTA

Downstream 100 bases:

>100_bases
CCAGGTTACCGAACTGAGAAAGGCCCATATCACCGGCACCATGGTGGCTTACTATTTTATTTGTCACCGCAAGTTATGGC
TTTTTGCTAAGGGCCTTAAC

Product: CRISPR-associated helicase Cas3

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 917; Mature: 916

Protein sequence:

>917_residues
MADFWAKSNGISLSKHTGDVLAATGVLQKKLGNKVPGDWWLGLKYAALLHDSGKVDPAFQERIKKQGQKAGDVPADEPKY
KDIPHSILSLFFVRPENFTFSQPYLAYAVISAIVFHHWRESFPDYFLGSQEYLIRKKAGELEERAALWNRLSRDLVAELT
ILAEKYELDPAVMGLNTTLTEYLRYNTLGSAGLLIPPYTLVYLPEQIRAKAARGDEKDRARVFIAGNLMRADHFASMVEE
SNTGLQIDAIESGRVFTTGEIERTLKEKFNTPDYWQKQFFQNHKEAKGDNLVLVAPTGFGKTEFAFLWGAEKKNFILLPM
RAAVNKIWERTRDMVESLGEKGDDQVALLHSDAALETFSRYQQQGDLESESNTRKAMELARHLARTYIIATADQVAPAAL
RYPGYERIFAALMNGALVIDEVQAYDPRAAAIITHLVQQNAYLGGNNLIMTATLPPFISRELVKRLGLADHQVIRLIDEP
EFEGVAASCRHRLGFNVHAGDYASAVTAIIRAAQQGKKVLVVMNTVRAACEIYDKIMAVLQQEQLAIETLLLHSRFILKQ
KEELEKAVVEKYMPNRPDRDAGPCIVVATQIVEASLDIDADVLFTEPSPADSLIQRMGRVFRRFARLTGNNAPPEANVII
IINGGDQPLNRRRRSDQEEKTAGDVQLASGLKTVYNRDLTALSLVILLMALKGEAGLSPGSSLAEELKRKPWVDCFKKSK
GKGNSGNTNRRLVEVIKSITGQTLLLTEKEKMDWVELTYGILDELRRIDNYPLQLEDYIQKYEETLAILDHGYCSDRKRD
AERLFRDINAITGVPIEKAGEFYDSIRTWLSGKNAGSLNFLELALAILPRFTVNCPFLATSNGERVRDLDFEAMLPPELD
IKSITKIRSRLERWLKGIYILDLPYDQVKGLEVQNEQ

Sequences:

>Translated_917_residues
MADFWAKSNGISLSKHTGDVLAATGVLQKKLGNKVPGDWWLGLKYAALLHDSGKVDPAFQERIKKQGQKAGDVPADEPKY
KDIPHSILSLFFVRPENFTFSQPYLAYAVISAIVFHHWRESFPDYFLGSQEYLIRKKAGELEERAALWNRLSRDLVAELT
ILAEKYELDPAVMGLNTTLTEYLRYNTLGSAGLLIPPYTLVYLPEQIRAKAARGDEKDRARVFIAGNLMRADHFASMVEE
SNTGLQIDAIESGRVFTTGEIERTLKEKFNTPDYWQKQFFQNHKEAKGDNLVLVAPTGFGKTEFAFLWGAEKKNFILLPM
RAAVNKIWERTRDMVESLGEKGDDQVALLHSDAALETFSRYQQQGDLESESNTRKAMELARHLARTYIIATADQVAPAAL
RYPGYERIFAALMNGALVIDEVQAYDPRAAAIITHLVQQNAYLGGNNLIMTATLPPFISRELVKRLGLADHQVIRLIDEP
EFEGVAASCRHRLGFNVHAGDYASAVTAIIRAAQQGKKVLVVMNTVRAACEIYDKIMAVLQQEQLAIETLLLHSRFILKQ
KEELEKAVVEKYMPNRPDRDAGPCIVVATQIVEASLDIDADVLFTEPSPADSLIQRMGRVFRRFARLTGNNAPPEANVII
IINGGDQPLNRRRRSDQEEKTAGDVQLASGLKTVYNRDLTALSLVILLMALKGEAGLSPGSSLAEELKRKPWVDCFKKSK
GKGNSGNTNRRLVEVIKSITGQTLLLTEKEKMDWVELTYGILDELRRIDNYPLQLEDYIQKYEETLAILDHGYCSDRKRD
AERLFRDINAITGVPIEKAGEFYDSIRTWLSGKNAGSLNFLELALAILPRFTVNCPFLATSNGERVRDLDFEAMLPPELD
IKSITKIRSRLERWLKGIYILDLPYDQVKGLEVQNEQ
>Mature_916_residues
ADFWAKSNGISLSKHTGDVLAATGVLQKKLGNKVPGDWWLGLKYAALLHDSGKVDPAFQERIKKQGQKAGDVPADEPKYK
DIPHSILSLFFVRPENFTFSQPYLAYAVISAIVFHHWRESFPDYFLGSQEYLIRKKAGELEERAALWNRLSRDLVAELTI
LAEKYELDPAVMGLNTTLTEYLRYNTLGSAGLLIPPYTLVYLPEQIRAKAARGDEKDRARVFIAGNLMRADHFASMVEES
NTGLQIDAIESGRVFTTGEIERTLKEKFNTPDYWQKQFFQNHKEAKGDNLVLVAPTGFGKTEFAFLWGAEKKNFILLPMR
AAVNKIWERTRDMVESLGEKGDDQVALLHSDAALETFSRYQQQGDLESESNTRKAMELARHLARTYIIATADQVAPAALR
YPGYERIFAALMNGALVIDEVQAYDPRAAAIITHLVQQNAYLGGNNLIMTATLPPFISRELVKRLGLADHQVIRLIDEPE
FEGVAASCRHRLGFNVHAGDYASAVTAIIRAAQQGKKVLVVMNTVRAACEIYDKIMAVLQQEQLAIETLLLHSRFILKQK
EELEKAVVEKYMPNRPDRDAGPCIVVATQIVEASLDIDADVLFTEPSPADSLIQRMGRVFRRFARLTGNNAPPEANVIII
INGGDQPLNRRRRSDQEEKTAGDVQLASGLKTVYNRDLTALSLVILLMALKGEAGLSPGSSLAEELKRKPWVDCFKKSKG
KGNSGNTNRRLVEVIKSITGQTLLLTEKEKMDWVELTYGILDELRRIDNYPLQLEDYIQKYEETLAILDHGYCSDRKRDA
ERLFRDINAITGVPIEKAGEFYDSIRTWLSGKNAGSLNFLELALAILPRFTVNCPFLATSNGERVRDLDFEAMLPPELDI
KSITKIRSRLERWLKGIYILDLPYDQVKGLEVQNEQ

Specific function: Unknown

COG id: COG1203

COG function: function code R; Predicted helicases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase C-terminal domain [H]

Homologues:

Organism=Escherichia coli, GI1789119, Length=370, Percent_Identity=28.1081081081081, Blast_Score=99, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR011545
- InterPro:   IPR001650
- InterPro:   IPR006474
- InterPro:   IPR014021 [H]

Pfam domain/function: PF00270 DEAD; PF00271 Helicase_C [H]

EC number: NA

Molecular weight: Translated: 103155; Mature: 103024

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADFWAKSNGISLSKHTGDVLAATGVLQKKLGNKVPGDWWLGLKYAALLHDSGKVDPAFQ
CCCCCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCHHHH
ERIKKQGQKAGDVPADEPKYKDIPHSILSLFFVRPENFTFSQPYLAYAVISAIVFHHWRE
HHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHHHHHHH
SFPDYFLGSQEYLIRKKAGELEERAALWNRLSRDLVAELTILAEKYELDPAVMGLNTTLT
HCCHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHH
EYLRYNTLGSAGLLIPPYTLVYLPEQIRAKAARGDEKDRARVFIAGNLMRADHFASMVEE
HHHHHCCCCCCCCCCCCEEEEECCHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHC
SNTGLQIDAIESGRVFTTGEIERTLKEKFNTPDYWQKQFFQNHKEAKGDNLVLVAPTGFG
CCCCEEEEEECCCCEEECHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCC
KTEFAFLWGAEKKNFILLPMRAAVNKIWERTRDMVESLGEKGDDQVALLHSDAALETFSR
CCEEEEEECCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHH
YQQQGDLESESNTRKAMELARHLARTYIIATADQVAPAALRYPGYERIFAALMNGALVID
HHHCCCCCCCCHHHHHHHHHHHHHHHHHEEECHHHCHHHHCCCCHHHHHHHHHCCCEEEE
EVQAYDPRAAAIITHLVQQNAYLGGNNLIMTATLPPFISRELVKRLGLADHQVIRLIDEP
HHHHCCCHHHHHHHHHHHHCCEECCCCEEEEECCCHHHHHHHHHHCCCCHHHHHHHHCCC
EFEGVAASCRHRLGFNVHAGDYASAVTAIIRAAQQGKKVLVVMNTVRAACEIYDKIMAVL
CCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHH
QQEQLAIETLLLHSRFILKQKEELEKAVVEKYMPNRPDRDAGPCIVVATQIVEASLDIDA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHHCCCCC
DVLFTEPSPADSLIQRMGRVFRRFARLTGNNAPPEANVIIIINGGDQPLNRRRRSDQEEK
EEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHCCCHHHH
TAGDVQLASGLKTVYNRDLTALSLVILLMALKGEAGLSPGSSLAEELKRKPWVDCFKKSK
HHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHHHHHHCC
GKGNSGNTNRRLVEVIKSITGQTLLLTEKEKMDWVELTYGILDELRRIDNYPLQLEDYIQ
CCCCCCCCHHHHHHHHHHHCCCEEEEECHHHCHHHHHHHHHHHHHHHHCCCCCCHHHHHH
KYEETLAILDHGYCSDRKRDAERLFRDINAITGVPIEKAGEFYDSIRTWLSGKNAGSLNF
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHH
LELALAILPRFTVNCPFLATSNGERVRDLDFEAMLPPELDIKSITKIRSRLERWLKGIYI
HHHHHHHHCCCCCCCCEEECCCCCEEECCCCHHCCCCCCCHHHHHHHHHHHHHHHCCEEE
LDLPYDQVKGLEVQNEQ
EECCHHHHCCCCCCCCC
>Mature Secondary Structure 
ADFWAKSNGISLSKHTGDVLAATGVLQKKLGNKVPGDWWLGLKYAALLHDSGKVDPAFQ
CCCCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCHHHH
ERIKKQGQKAGDVPADEPKYKDIPHSILSLFFVRPENFTFSQPYLAYAVISAIVFHHWRE
HHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHHHHHHH
SFPDYFLGSQEYLIRKKAGELEERAALWNRLSRDLVAELTILAEKYELDPAVMGLNTTLT
HCCHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHH
EYLRYNTLGSAGLLIPPYTLVYLPEQIRAKAARGDEKDRARVFIAGNLMRADHFASMVEE
HHHHHCCCCCCCCCCCCEEEEECCHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHC
SNTGLQIDAIESGRVFTTGEIERTLKEKFNTPDYWQKQFFQNHKEAKGDNLVLVAPTGFG
CCCCEEEEEECCCCEEECHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCC
KTEFAFLWGAEKKNFILLPMRAAVNKIWERTRDMVESLGEKGDDQVALLHSDAALETFSR
CCEEEEEECCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHH
YQQQGDLESESNTRKAMELARHLARTYIIATADQVAPAALRYPGYERIFAALMNGALVID
HHHCCCCCCCCHHHHHHHHHHHHHHHHHEEECHHHCHHHHCCCCHHHHHHHHHCCCEEEE
EVQAYDPRAAAIITHLVQQNAYLGGNNLIMTATLPPFISRELVKRLGLADHQVIRLIDEP
HHHHCCCHHHHHHHHHHHHCCEECCCCEEEEECCCHHHHHHHHHHCCCCHHHHHHHHCCC
EFEGVAASCRHRLGFNVHAGDYASAVTAIIRAAQQGKKVLVVMNTVRAACEIYDKIMAVL
CCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHH
QQEQLAIETLLLHSRFILKQKEELEKAVVEKYMPNRPDRDAGPCIVVATQIVEASLDIDA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHHCCCCC
DVLFTEPSPADSLIQRMGRVFRRFARLTGNNAPPEANVIIIINGGDQPLNRRRRSDQEEK
EEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHCCCHHHH
TAGDVQLASGLKTVYNRDLTALSLVILLMALKGEAGLSPGSSLAEELKRKPWVDCFKKSK
HHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHHHHHHCC
GKGNSGNTNRRLVEVIKSITGQTLLLTEKEKMDWVELTYGILDELRRIDNYPLQLEDYIQ
CCCCCCCCHHHHHHHHHHHCCCEEEEECHHHCHHHHHHHHHHHHHHHHCCCCCCHHHHHH
KYEETLAILDHGYCSDRKRDAERLFRDINAITGVPIEKAGEFYDSIRTWLSGKNAGSLNF
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHH
LELALAILPRFTVNCPFLATSNGERVRDLDFEAMLPPELDIKSITKIRSRLERWLKGIYI
HHHHHHHHCCCCCCCCEEECCCCCEEECCCCHHCCCCCCCHHHHHHHHHHHHHHHCCEEE
LDLPYDQVKGLEVQNEQ
EECCHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]