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The map label for this gene is sigI [H]

Identifier: 83590534

GI number: 83590534

Start: 1736485

End: 1737213

Strand: Reverse

Name: sigI [H]

Synonym: Moth_1698

Alternate gene names: 83590534

Gene position: 1737213-1736485 (Counterclockwise)

Preceding gene: 83590535

Following gene: 83590533

Centisome position: 66.08

GC content: 58.44

Gene sequence:

>729_bases
TTGCAGCCCGGAGCCGACCCGAACCACCTCCTGGCTCTGGCCAGGAGCGGGGATGCCGTGGCCAGGGAGGAACTGATCCG
GCGCTATACCCCCTTTATCCTATCGGTAGTTTCCAGGACGACAGGTCATTTTATCCGCCTGGGCGAAGACGACGAAGCCA
GTATCGGGTTAATGGCCTTTAACGAGGCGATAGATAACTACCGCCTGGAAGGCGGTGCCACCTTTTTAACTCTGGCGGAA
ACAGTTATCCGGCGGCGTTTAATTGACTACTTTCGCCGGGAGGGGCGCCACCGCCAGGTCCTGTCCCTCCAGGCCATGGA
GGGAGAAACGGCGGCCGCAGTCGACCCTGTGGCCAGGGACGAGATAAACATGGTGGACGAACTGGCGGACAGGCGGGAAG
AGATCGAGCGTTACCAGAAAGAACTCGCCTCTTATGGTATCACCTTGAAGGATCTGGTAAAATGCAGCCCCCAGCACCGG
GATGCCCGCGACCGGGCCCTGGCGGCCGCCCGGGTAGTAGTCGCCAACCCCCTTCTCAGAAAGTATCTCCTGGAAAGGAA
GGCCCTGCCCTTAAAAGCCCTGGAAAAAGAAGTCGAGACCAGCCGCAAAACCCTTGAACGCCATCGCAAATACATCATTG
CCGCAGTAGTTATGCTTATGGGCAATTACGAATACCTGGCAGGTTACATTGGCCAGGACCGGAGGGGTGGTCAGGATGGA
CGGCGCTGA

Upstream 100 bases:

>100_bases
GATTCTGACGGTAATATTAAACCTGCTCTTCCGGCGTTAATTCCTGCTGGCCAAAAATCGCTATCCAGGTGCGAAAAAGT
ATAGTGAGGTGAAGCTCAAA

Downstream 100 bases:

>100_bases
ACGCGGTATAGTCATGTCCAGGGAGGGGCAGAGGGTCATCGTTTTAACGCCCCGGGGCGACTGGCGGGCTTTAAAATTGG
CCGGACCCCTGCCGGAAGTG

Product: putative RNA polymerase sigma factor SigI

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MQPGADPNHLLALARSGDAVAREELIRRYTPFILSVVSRTTGHFIRLGEDDEASIGLMAFNEAIDNYRLEGGATFLTLAE
TVIRRRLIDYFRREGRHRQVLSLQAMEGETAAAVDPVARDEINMVDELADRREEIERYQKELASYGITLKDLVKCSPQHR
DARDRALAAARVVVANPLLRKYLLERKALPLKALEKEVETSRKTLERHRKYIIAAVVMLMGNYEYLAGYIGQDRRGGQDG
RR

Sequences:

>Translated_242_residues
MQPGADPNHLLALARSGDAVAREELIRRYTPFILSVVSRTTGHFIRLGEDDEASIGLMAFNEAIDNYRLEGGATFLTLAE
TVIRRRLIDYFRREGRHRQVLSLQAMEGETAAAVDPVARDEINMVDELADRREEIERYQKELASYGITLKDLVKCSPQHR
DARDRALAAARVVVANPLLRKYLLERKALPLKALEKEVETSRKTLERHRKYIIAAVVMLMGNYEYLAGYIGQDRRGGQDG
RR
>Mature_242_residues
MQPGADPNHLLALARSGDAVAREELIRRYTPFILSVVSRTTGHFIRLGEDDEASIGLMAFNEAIDNYRLEGGATFLTLAE
TVIRRRLIDYFRREGRHRQVLSLQAMEGETAAAVDPVARDEINMVDELADRREEIERYQKELASYGITLKDLVKCSPQHR
DARDRALAAARVVVANPLLRKYLLERKALPLKALEKEVETSRKTLERHRKYIIAAVVMLMGNYEYLAGYIGQDRRGGQDG
RR

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor plays a role in survival at low temperatures and could be involved in heat shock stress response, posi

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014244
- InterPro:   IPR007627
- InterPro:   IPR013325 [H]

Pfam domain/function: PF04542 Sigma70_r2 [H]

EC number: NA

Molecular weight: Translated: 27523; Mature: 27523

Theoretical pI: Translated: 9.21; Mature: 9.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQPGADPNHLLALARSGDAVAREELIRRYTPFILSVVSRTTGHFIRLGEDDEASIGLMAF
CCCCCCHHHHEEHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHH
NEAIDNYRLEGGATFLTLAETVIRRRLIDYFRREGRHRQVLSLQAMEGETAAAVDPVARD
HHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHCCCHHHH
EINMVDELADRREEIERYQKELASYGITLKDLVKCSPQHRDARDRALAAARVVVANPLLR
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
KYLLERKALPLKALEKEVETSRKTLERHRKYIIAAVVMLMGNYEYLAGYIGQDRRGGQDG
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCC
RR
CC
>Mature Secondary Structure
MQPGADPNHLLALARSGDAVAREELIRRYTPFILSVVSRTTGHFIRLGEDDEASIGLMAF
CCCCCCHHHHEEHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHH
NEAIDNYRLEGGATFLTLAETVIRRRLIDYFRREGRHRQVLSLQAMEGETAAAVDPVARD
HHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHCCCHHHH
EINMVDELADRREEIERYQKELASYGITLKDLVKCSPQHRDARDRALAAARVVVANPLLR
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
KYLLERKALPLKALEKEVETSRKTLERHRKYIIAAVVMLMGNYEYLAGYIGQDRRGGQDG
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCC
RR
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]