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The map label for this gene is dmsB [H]

Identifier: 83590232

GI number: 83590232

Start: 1431236

End: 1431823

Strand: Reverse

Name: dmsB [H]

Synonym: Moth_1385

Alternate gene names: 83590232

Gene position: 1431823-1431236 (Counterclockwise)

Preceding gene: 83590233

Following gene: 83590231

Centisome position: 54.47

GC content: 56.12

Gene sequence:

>588_bases
ATGGCCGGTCAACTAGGTTTTCATGTACAGCAGGACCGCTGCATCGGCTGCTTTACCTGCCAGATAGCCTGTAAGGATAA
AAACGACCTGGAGGTAGGGCAGCTATTCAGGCGTGTCCGTGAGATTGCCGGGGGCGGTTATACGGAAACCGGCAATAATG
CCTTTAGAGCCGACGTCTATGCCTACTGGATCTCTTTGAGCTGTAACCACTGCCAGGACCCGCCCTGTGTTAAGAACTGT
CCCACCGGGGCCATGCAAAAGCGACCCGAGGACGGTATCGTCTTCGTCGACCAGAATAAATGTATCGGCTGCCGCTACTG
CGTCTGGAGCTGCCCCTACGGGGCGCCCCAGTATAACCCCCAGATCGGTAAGGTAGGGAAGTGCGACTTCTGCCGCGATC
TCCTGGCCAAAGGGGAACAACCGGCGTGCGTAGCCGCCTGTCCCATGCGGGTACTGGATTTCGGCCCCCTGGACGAGCTC
AAAAAGAAATACGGCGGTACCAACCAGATTAAAGGCCTGCCTGACCCCAACACTACTAAACCTTCAATTTTAATAACTCC
CCACCGGGATGCAGCCCTGGGGAAATAG

Upstream 100 bases:

>100_bases
CCAGCATACCAACCTTGTGCAGGTGGCTAAAGCTTAAAGGGCAGGCCCTGCCTCCCTGGCGGTACCGGGAGAGGTAAGAA
AGAGAACGGAGGAGAAAAAT

Downstream 100 bases:

>100_bases
AAAAGGGAGGAGAAGCTGATGGGTAAAGAATGGGCGCTGGTGCTTTTTACCTTACTGGCTCAGATGAGCGTAGGGTTAAT
GGTCGTCGCCCAGGCATTGA

Product: 4Fe-4S ferredoxin, iron-sulfur binding

Products: Reduced form of N-Oxide compounds [C]

Alternate protein names: DMSO reductase iron-sulfur subunit [H]

Number of amino acids: Translated: 195; Mature: 194

Protein sequence:

>195_residues
MAGQLGFHVQQDRCIGCFTCQIACKDKNDLEVGQLFRRVREIAGGGYTETGNNAFRADVYAYWISLSCNHCQDPPCVKNC
PTGAMQKRPEDGIVFVDQNKCIGCRYCVWSCPYGAPQYNPQIGKVGKCDFCRDLLAKGEQPACVAACPMRVLDFGPLDEL
KKKYGGTNQIKGLPDPNTTKPSILITPHRDAALGK

Sequences:

>Translated_195_residues
MAGQLGFHVQQDRCIGCFTCQIACKDKNDLEVGQLFRRVREIAGGGYTETGNNAFRADVYAYWISLSCNHCQDPPCVKNC
PTGAMQKRPEDGIVFVDQNKCIGCRYCVWSCPYGAPQYNPQIGKVGKCDFCRDLLAKGEQPACVAACPMRVLDFGPLDEL
KKKYGGTNQIKGLPDPNTTKPSILITPHRDAALGK
>Mature_194_residues
AGQLGFHVQQDRCIGCFTCQIACKDKNDLEVGQLFRRVREIAGGGYTETGNNAFRADVYAYWISLSCNHCQDPPCVKNCP
TGAMQKRPEDGIVFVDQNKCIGCRYCVWSCPYGAPQYNPQIGKVGKCDFCRDLLAKGEQPACVAACPMRVLDFGPLDELK
KKYGGTNQIKGLPDPNTTKPSILITPHRDAALGK

Specific function: Electron transfer subunit of the terminal reductase during anaerobic growth on various sulfoxide and N-oxide compounds [H]

COG id: COG0437

COG function: function code C; Fe-S-cluster-containing hydrogenase components 1

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787122, Length=191, Percent_Identity=52.3560209424084, Blast_Score=211, Evalue=3e-56,
Organism=Escherichia coli, GI1787872, Length=191, Percent_Identity=50.7853403141361, Blast_Score=205, Evalue=1e-54,
Organism=Escherichia coli, GI2367345, Length=158, Percent_Identity=37.3417721518987, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1787749, Length=159, Percent_Identity=32.7044025157233, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1790326, Length=155, Percent_Identity=33.5483870967742, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI226510944, Length=149, Percent_Identity=41.6107382550336, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1789370, Length=177, Percent_Identity=34.4632768361582, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1787740, Length=100, Percent_Identity=40, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1787478, Length=134, Percent_Identity=35.0746268656716, Blast_Score=85, Evalue=3e-18,
Organism=Escherichia coli, GI2367245, Length=159, Percent_Identity=30.188679245283, Blast_Score=81, Evalue=4e-17,
Organism=Escherichia coli, GI1787963, Length=147, Percent_Identity=30.6122448979592, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1789067, Length=177, Percent_Identity=31.0734463276836, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI87082180, Length=187, Percent_Identity=31.5508021390374, Blast_Score=71, Evalue=4e-14,
Organism=Escherichia coli, GI1788811, Length=154, Percent_Identity=32.4675324675325, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI87082179, Length=158, Percent_Identity=28.4810126582279, Blast_Score=68, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR014297 [H]

Pfam domain/function: PF00037 Fer4 [H]

EC number: NA

Molecular weight: Translated: 21443; Mature: 21312

Theoretical pI: Translated: 8.12; Mature: 8.12

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

8.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
9.7 %Cys+Met (Translated Protein)
8.2 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
9.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGQLGFHVQQDRCIGCFTCQIACKDKNDLEVGQLFRRVREIAGGGYTETGNNAFRADVY
CCCCCCCEECCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEHEEE
AYWISLSCNHCQDPPCVKNCPTGAMQKRPEDGIVFVDQNKCIGCRYCVWSCPYGAPQYNP
EEEEEECCCCCCCCCCCCCCCCCHHHCCCCCCEEEEECCCCEEEEEEEEECCCCCCCCCC
QIGKVGKCDFCRDLLAKGEQPACVAACPMRVLDFGPLDELKKKYGGTNQIKGLPDPNTTK
CCCCCCCCHHHHHHHHCCCCCCEEHHCCHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCC
PSILITPHRDAALGK
CEEEEECCCCCCCCC
>Mature Secondary Structure 
AGQLGFHVQQDRCIGCFTCQIACKDKNDLEVGQLFRRVREIAGGGYTETGNNAFRADVY
CCCCCCEECCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEHEEE
AYWISLSCNHCQDPPCVKNCPTGAMQKRPEDGIVFVDQNKCIGCRYCVWSCPYGAPQYNP
EEEEEECCCCCCCCCCCCCCCCCHHHCCCCCCEEEEECCCCEEEEEEEEECCCCCCCCCC
QIGKVGKCDFCRDLLAKGEQPACVAACPMRVLDFGPLDELKKKYGGTNQIKGLPDPNTTK
CCCCCCCCHHHHHHHHCCCCCCEEHHCCHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCC
PSILITPHRDAALGK
CEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: Iron-Sulfur Cluster. [C]

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: N-Oxide; Sulfoxide Compounds Including Trimethylamine N-Oxide. [C]

Specific reaction: Reduces Various N-Oxide And Sulfoxide Compounds Including Trimethylamine N-Oxide. [C]

General reaction: Oxidoreductases [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3062312; 8905232; 9278503; 2174699; 1653010 [H]