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The map label for this gene is dmsB [H]

Identifier: 83590228

GI number: 83590228

Start: 1426392

End: 1426940

Strand: Reverse

Name: dmsB [H]

Synonym: Moth_1381

Alternate gene names: 83590228

Gene position: 1426940-1426392 (Counterclockwise)

Preceding gene: 83590229

Following gene: 83590227

Centisome position: 54.28

GC content: 59.02

Gene sequence:

>549_bases
ATGCGAGTCGGTTTTTTCCTGGACCTGAACCGTTGCATCGGTTGCCGGGCCTGTGAGGGGGCCTGCCAGAACTGGAAGGG
TCCCGGGTTTCCCCTGCGGCGGGTGCAGGCTTTTGCTGGCCGGGTCAAGGGCCGGTGGCAGGAATATTATCTCTCCCTGG
CCTGCAATCATTGTGAAAACCCCGAGTGCTTCCGGGTATGTCCCGCACGCGCCTACAACAAGCGCCGGGACGGCATCGTC
CTGCATAACAGCGGGCGGTGCAGCGGTTGTAACCGTTGCGTCCGCGCCTGCCCCTTCGGGGCGCCCCGTTATAACCTGAC
AATAGGGAAAGTCGAAAAGTGTGACCTCTGTGTAGAGAGAATAGATAATGGCCTGCCACCGGCCTGCGTTGAAGCCTGTC
CCGTCAAAGCCCTGCAGGTTTTACAACTAGATGAAGGCAAGGAACTGGGAGAGAGGTGGGTACCGGGACTGGCTGACGTC
AACATCACCAGACCCACCCTGCGCCTGAAGGCTCCGGAGGAAGGGGAAAGGTTTTTTCTTGTTGGTTAA

Upstream 100 bases:

>100_bases
CGGGCAGGTTTCCTGTAGTCACCACGCAGCGCCTGAAGGGAACATGTCCTACCCGGTAGCACAATGACTTGATAAGCATT
TTCGGAGGGGGGTACAGGGG

Downstream 100 bases:

>100_bases
TACAAAAATTAACGGTGATTTTTGTATGGAACCACAAAAATGGCGCCGTTTTCTGGAAATGGCTGCTGCGGGCAAGGGCT
TGGTCTCCATTGCCCGCTAC

Product: 4Fe-4S ferredoxin, iron-sulfur binding

Products: Reduced form of N-Oxide compounds [C]

Alternate protein names: DMSO reductase iron-sulfur subunit [H]

Number of amino acids: Translated: 182; Mature: 182

Protein sequence:

>182_residues
MRVGFFLDLNRCIGCRACEGACQNWKGPGFPLRRVQAFAGRVKGRWQEYYLSLACNHCENPECFRVCPARAYNKRRDGIV
LHNSGRCSGCNRCVRACPFGAPRYNLTIGKVEKCDLCVERIDNGLPPACVEACPVKALQVLQLDEGKELGERWVPGLADV
NITRPTLRLKAPEEGERFFLVG

Sequences:

>Translated_182_residues
MRVGFFLDLNRCIGCRACEGACQNWKGPGFPLRRVQAFAGRVKGRWQEYYLSLACNHCENPECFRVCPARAYNKRRDGIV
LHNSGRCSGCNRCVRACPFGAPRYNLTIGKVEKCDLCVERIDNGLPPACVEACPVKALQVLQLDEGKELGERWVPGLADV
NITRPTLRLKAPEEGERFFLVG
>Mature_182_residues
MRVGFFLDLNRCIGCRACEGACQNWKGPGFPLRRVQAFAGRVKGRWQEYYLSLACNHCENPECFRVCPARAYNKRRDGIV
LHNSGRCSGCNRCVRACPFGAPRYNLTIGKVEKCDLCVERIDNGLPPACVEACPVKALQVLQLDEGKELGERWVPGLADV
NITRPTLRLKAPEEGERFFLVG

Specific function: Electron transfer subunit of the terminal reductase during anaerobic growth on various sulfoxide and N-oxide compounds [H]

COG id: COG0437

COG function: function code C; Fe-S-cluster-containing hydrogenase components 1

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787122, Length=185, Percent_Identity=42.7027027027027, Blast_Score=147, Evalue=3e-37,
Organism=Escherichia coli, GI1787872, Length=185, Percent_Identity=41.0810810810811, Blast_Score=144, Evalue=3e-36,
Organism=Escherichia coli, GI1787749, Length=177, Percent_Identity=33.3333333333333, Blast_Score=95, Evalue=3e-21,
Organism=Escherichia coli, GI1790326, Length=177, Percent_Identity=31.638418079096, Blast_Score=90, Evalue=8e-20,
Organism=Escherichia coli, GI1789370, Length=168, Percent_Identity=32.7380952380952, Blast_Score=87, Evalue=9e-19,
Organism=Escherichia coli, GI1788811, Length=145, Percent_Identity=38.6206896551724, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI87082179, Length=159, Percent_Identity=35.2201257861635, Blast_Score=83, Evalue=8e-18,
Organism=Escherichia coli, GI226510944, Length=142, Percent_Identity=33.8028169014084, Blast_Score=82, Evalue=2e-17,
Organism=Escherichia coli, GI2367245, Length=156, Percent_Identity=35.8974358974359, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI2367345, Length=150, Percent_Identity=33.3333333333333, Blast_Score=81, Evalue=4e-17,
Organism=Escherichia coli, GI1787740, Length=118, Percent_Identity=36.4406779661017, Blast_Score=77, Evalue=5e-16,
Organism=Escherichia coli, GI87082180, Length=143, Percent_Identity=37.7622377622378, Blast_Score=77, Evalue=7e-16,
Organism=Escherichia coli, GI1787478, Length=98, Percent_Identity=40.8163265306122, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1789067, Length=164, Percent_Identity=32.3170731707317, Blast_Score=66, Evalue=1e-12,
Organism=Escherichia coli, GI1787963, Length=150, Percent_Identity=29.3333333333333, Blast_Score=64, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR014297 [H]

Pfam domain/function: PF00037 Fer4 [H]

EC number: NA

Molecular weight: Translated: 20392; Mature: 20392

Theoretical pI: Translated: 8.54; Mature: 8.54

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

8.8 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
9.3 %Cys+Met (Translated Protein)
8.8 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
9.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVGFFLDLNRCIGCRACEGACQNWKGPGFPLRRVQAFAGRVKGRWQEYYLSLACNHCEN
CCEEEEEEHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCC
PECFRVCPARAYNKRRDGIVLHNSGRCSGCNRCVRACPFGAPRYNLTIGKVEKCDLCVER
CCCEEECCHHHCCCCCCCEEEECCCCCCHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHH
IDNGLPPACVEACPVKALQVLQLDEGKELGERWVPGLADVNITRPTLRLKAPEEGERFFL
HHCCCCHHHHHHCCHHHHHHHHCCCCHHHHHHHCCCCCCCEECCCEEEEECCCCCCEEEE
VG
EC
>Mature Secondary Structure
MRVGFFLDLNRCIGCRACEGACQNWKGPGFPLRRVQAFAGRVKGRWQEYYLSLACNHCEN
CCEEEEEEHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCC
PECFRVCPARAYNKRRDGIVLHNSGRCSGCNRCVRACPFGAPRYNLTIGKVEKCDLCVER
CCCEEECCHHHCCCCCCCEEEECCCCCCHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHH
IDNGLPPACVEACPVKALQVLQLDEGKELGERWVPGLADVNITRPTLRLKAPEEGERFFL
HHCCCCHHHHHHCCHHHHHHHHCCCCHHHHHHHCCCCCCCEECCCEEEEECCCCCCEEEE
VG
EC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: Iron-Sulfur Cluster. [C]

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: N-Oxide; Sulfoxide Compounds Including Trimethylamine N-Oxide. [C]

Specific reaction: Reduces Various N-Oxide And Sulfoxide Compounds Including Trimethylamine N-Oxide. [C]

General reaction: Oxidoreductases [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3062312; 8905232; 9278503; 2174699; 1653010 [H]