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The map label for this gene is spoVAF [H]

Identifier: 83590220

GI number: 83590220

Start: 1418789

End: 1420375

Strand: Reverse

Name: spoVAF [H]

Synonym: Moth_1373

Alternate gene names: 83590220

Gene position: 1420375-1418789 (Counterclockwise)

Preceding gene: 83590221

Following gene: 83590219

Centisome position: 54.03

GC content: 52.93

Gene sequence:

>1587_bases
ATGACCATTTCCGGCGACATTGTAAAAGTTGATCCCAATTTAGATGTTAACAATAACTGGATTATGAAGGAACTGGGCGT
TGGGCAGAGTTTTGACGTTATCAGGCGGGATATAACCATTGCCGGGCGCCGGGCTACTATGTTTTATATTAATGGTATGG
CCCGGGAGGATGTCCTGGTATATATCCTTACCTCCCTCTCCAAGCTGAAACGTGAGGACGTAACCCCCGACGCATATACC
AAGATCTTAAACCAGTATATTAGCTACCTGCAGGTCGAAGCCCTGGACGATCTGCATAAAGTCGTTGATAAAATCCTGTC
CGGGGGCATTGTCATCCTTATAGATGGCTTTAAAAAGGTTATCCAGCTCGATGCCCGGAACCACCCGGTCCGCAATCCGC
AGGAATCCGACCTGGAGCGGGTGGTACGCGGCTCCCGCGACAATTTTGTCGAAACCCTGTTATTTAACGTCAATCTCCTG
CGTCGCCGGGTGCGGGACCCCAAACTGCGGACGGAAATCCTTCAGGTGGGTAGTCGTTCCAAAACTGATGTGGCCGTCGT
TTATGTTCAAGATATCGCCAACCCGCGGCTGGTAGATACAATTAAAGAACGAATCAAGGCCATAAAGATGGACGGCCTGC
CCATGGCGGAGAAATCGCTGGAGGAGTTTATTAGCCCGGGGAGCTTCTGGAATCCCTTCCCACGGGTACGCTACACCGAG
CGGCCGGATGTAGCTGCCGCCCATCTCTTTGAAGGTCACGTACTTGTCATGGTGGATACTTCCCCCAGCGTAATGATCCT
GCCAGCGACTATTTTCCACCACCTGCAGCACGCCGAGGAGTTTCGCCAAGCGCCCCTTATTGGCACTTTTTTACGCGTGG
TACGCTTTATCGGAGTATTACTTTCTTTATTTCTGCCTCCCGTATGGCTCCTGGCCGCTTTGCAGCACGATCTACTCCCG
CCGAACCTGGCCTGGATCGGCCCCAAACAGCTGGGATACATTCCCCTGGTGTGGCAGTTTCTCTTTGCCGAACTGGGCAT
CGATTTAATGCGCCTGGCGGCCATCCATACCCCCACCTCCCTGGCTACCGCCCTGGGTTTGATTGCCGCCGTTCTGATTG
GCCAGATCGCAGTGGCAGTAGGTTTCTTTAACCCTGAGGTTATTCTCTATATGGCCATTGCCGCCGTGGGTATCTTCGCC
ACCCCGAGCTATGAACTGGGGATGGCCAACACCCTGGTACGGATTGCTCTGTTAATCGGCGTGGGGCTGCTCCGTTTGCC
CGGTTTTGTGGCCGTTACCATGGGTATCTTTTTATTGCTGCTGACCACAAAGTCCTTCGGCCTGCCCTACCTGTGGCCCC
TGATACCCTTTAACGCCAGCGCCCTGAAGGACGTCCTGGTCCGTCCACCGGTTCCTTTACTGAAACTGCGGTCGAAAGCA
ATGCATCTTCTGGATATGGACCGGCAACCCTATCCGGCTCCGGCCCGCAAACCGTTAAAACGCAGTCTTAAAGAGAAAAA
GGAAGAGGAGAAACGCATTTGGCCCGAACTTGAAAAGAAAAAGGAAGATGATGGTAGTGAAGGTTAA

Upstream 100 bases:

>100_bases
TCACGGCAGGGGCGGTGGGTATTGCCGCGGCTGTCATCTTTGGTTATGTCATGGCCATAATATTCAACCCGCGCGGTTAA
GAAGTTAAGGGGATGAAGTA

Downstream 100 bases:

>100_bases
GCAGTGGCGATTGGGGGTGCCTCGCGCCCTCTTTTATTATTACTACGCCCCCTGGTGGGAAGCCTTCCTCCAGGCCCTGG
GCGCCCAGGTGGTAGTTTCT

Product: GerA spore germination protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 528; Mature: 527

Protein sequence:

>528_residues
MTISGDIVKVDPNLDVNNNWIMKELGVGQSFDVIRRDITIAGRRATMFYINGMAREDVLVYILTSLSKLKREDVTPDAYT
KILNQYISYLQVEALDDLHKVVDKILSGGIVILIDGFKKVIQLDARNHPVRNPQESDLERVVRGSRDNFVETLLFNVNLL
RRRVRDPKLRTEILQVGSRSKTDVAVVYVQDIANPRLVDTIKERIKAIKMDGLPMAEKSLEEFISPGSFWNPFPRVRYTE
RPDVAAAHLFEGHVLVMVDTSPSVMILPATIFHHLQHAEEFRQAPLIGTFLRVVRFIGVLLSLFLPPVWLLAALQHDLLP
PNLAWIGPKQLGYIPLVWQFLFAELGIDLMRLAAIHTPTSLATALGLIAAVLIGQIAVAVGFFNPEVILYMAIAAVGIFA
TPSYELGMANTLVRIALLIGVGLLRLPGFVAVTMGIFLLLLTTKSFGLPYLWPLIPFNASALKDVLVRPPVPLLKLRSKA
MHLLDMDRQPYPAPARKPLKRSLKEKKEEEKRIWPELEKKKEDDGSEG

Sequences:

>Translated_528_residues
MTISGDIVKVDPNLDVNNNWIMKELGVGQSFDVIRRDITIAGRRATMFYINGMAREDVLVYILTSLSKLKREDVTPDAYT
KILNQYISYLQVEALDDLHKVVDKILSGGIVILIDGFKKVIQLDARNHPVRNPQESDLERVVRGSRDNFVETLLFNVNLL
RRRVRDPKLRTEILQVGSRSKTDVAVVYVQDIANPRLVDTIKERIKAIKMDGLPMAEKSLEEFISPGSFWNPFPRVRYTE
RPDVAAAHLFEGHVLVMVDTSPSVMILPATIFHHLQHAEEFRQAPLIGTFLRVVRFIGVLLSLFLPPVWLLAALQHDLLP
PNLAWIGPKQLGYIPLVWQFLFAELGIDLMRLAAIHTPTSLATALGLIAAVLIGQIAVAVGFFNPEVILYMAIAAVGIFA
TPSYELGMANTLVRIALLIGVGLLRLPGFVAVTMGIFLLLLTTKSFGLPYLWPLIPFNASALKDVLVRPPVPLLKLRSKA
MHLLDMDRQPYPAPARKPLKRSLKEKKEEEKRIWPELEKKKEDDGSEG
>Mature_527_residues
TISGDIVKVDPNLDVNNNWIMKELGVGQSFDVIRRDITIAGRRATMFYINGMAREDVLVYILTSLSKLKREDVTPDAYTK
ILNQYISYLQVEALDDLHKVVDKILSGGIVILIDGFKKVIQLDARNHPVRNPQESDLERVVRGSRDNFVETLLFNVNLLR
RRVRDPKLRTEILQVGSRSKTDVAVVYVQDIANPRLVDTIKERIKAIKMDGLPMAEKSLEEFISPGSFWNPFPRVRYTER
PDVAAAHLFEGHVLVMVDTSPSVMILPATIFHHLQHAEEFRQAPLIGTFLRVVRFIGVLLSLFLPPVWLLAALQHDLLPP
NLAWIGPKQLGYIPLVWQFLFAELGIDLMRLAAIHTPTSLATALGLIAAVLIGQIAVAVGFFNPEVILYMAIAAVGIFAT
PSYELGMANTLVRIALLIGVGLLRLPGFVAVTMGIFLLLLTTKSFGLPYLWPLIPFNASALKDVLVRPPVPLLKLRSKAM
HLLDMDRQPYPAPARKPLKRSLKEKKEEEKRIWPELEKKKEDDGSEG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gerABKA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004995 [H]

Pfam domain/function: PF03323 GerA [H]

EC number: NA

Molecular weight: Translated: 59298; Mature: 59167

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTISGDIVKVDPNLDVNNNWIMKELGVGQSFDVIRRDITIAGRRATMFYINGMAREDVLV
CCCCCCEEEECCCCCCCCCEEHHHHCCCCCHHHHHHHHHEECCEEEEEEECCCCHHHHHH
YILTSLSKLKREDVTPDAYTKILNQYISYLQVEALDDLHKVVDKILSGGIVILIDGFKKV
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHH
IQLDARNHPVRNPQESDLERVVRGSRDNFVETLLFNVNLLRRRVRDPKLRTEILQVGSRS
HHHCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCC
KTDVAVVYVQDIANPRLVDTIKERIKAIKMDGLPMAEKSLEEFISPGSFWNPFPRVRYTE
CCCEEEEEEHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCC
RPDVAAAHLFEGHVLVMVDTSPSVMILPATIFHHLQHAEEFRQAPLIGTFLRVVRFIGVL
CCCHHHHHHCCCEEEEEEECCCCEEEEHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
LSLFLPPVWLLAALQHDLLPPNLAWIGPKQLGYIPLVWQFLFAELGIDLMRLAAIHTPTS
HHHHHHHHHHHHHHHHHCCCCCCEEECHHHCCHHHHHHHHHHHHHCHHHHHHHHHCCCHH
LATALGLIAAVLIGQIAVAVGFFNPEVILYMAIAAVGIFATPSYELGMANTLVRIALLIG
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
VGLLRLPGFVAVTMGIFLLLLTTKSFGLPYLWPLIPFNASALKDVLVRPPVPLLKLRSKA
HHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHH
MHLLDMDRQPYPAPARKPLKRSLKEKKEEEKRIWPELEKKKEDDGSEG
HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCC
>Mature Secondary Structure 
TISGDIVKVDPNLDVNNNWIMKELGVGQSFDVIRRDITIAGRRATMFYINGMAREDVLV
CCCCCEEEECCCCCCCCCEEHHHHCCCCCHHHHHHHHHEECCEEEEEEECCCCHHHHHH
YILTSLSKLKREDVTPDAYTKILNQYISYLQVEALDDLHKVVDKILSGGIVILIDGFKKV
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHH
IQLDARNHPVRNPQESDLERVVRGSRDNFVETLLFNVNLLRRRVRDPKLRTEILQVGSRS
HHHCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCC
KTDVAVVYVQDIANPRLVDTIKERIKAIKMDGLPMAEKSLEEFISPGSFWNPFPRVRYTE
CCCEEEEEEHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCC
RPDVAAAHLFEGHVLVMVDTSPSVMILPATIFHHLQHAEEFRQAPLIGTFLRVVRFIGVL
CCCHHHHHHCCCEEEEEEECCCCEEEEHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
LSLFLPPVWLLAALQHDLLPPNLAWIGPKQLGYIPLVWQFLFAELGIDLMRLAAIHTPTS
HHHHHHHHHHHHHHHHHCCCCCCEEECHHHCCHHHHHHHHHHHHHCHHHHHHHHHCCCHH
LATALGLIAAVLIGQIAVAVGFFNPEVILYMAIAAVGIFATPSYELGMANTLVRIALLIG
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
VGLLRLPGFVAVTMGIFLLLLTTKSFGLPYLWPLIPFNASALKDVLVRPPVPLLKLRSKA
HHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHH
MHLLDMDRQPYPAPARKPLKRSLKEKKEEEKRIWPELEKKKEDDGSEG
HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 7934829; 1368705; 3926949 [H]