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The map label for this gene is yvoA [H]

Identifier: 83590159

GI number: 83590159

Start: 1355965

End: 1356696

Strand: Reverse

Name: yvoA [H]

Synonym: Moth_1312

Alternate gene names: 83590159

Gene position: 1356696-1355965 (Counterclockwise)

Preceding gene: 83590160

Following gene: 83590158

Centisome position: 51.61

GC content: 56.01

Gene sequence:

>732_bases
ATGGTCATCGATAAAAATTCTTTCATCCCGCCCTATTATCAATTAGCGCAGATACTTGAACAGCAGATTAGATCGGGTCA
ATACCGTCCCGGCGATACTCTCCCTTCAGAGGCAGAATTGAGCGAAAAATACGGCCTCAGCCGGATGACGGTACGTCGCA
GCCTGAGTCAACTGGCCCGGGCCGGGTTAATTTACAGCGAACAGGGGAAGGGTACTTTTGTCTCGCGCCCCCGCCTCGAC
CGGGCGGTTTTCGTCATGGAGGAGTTTCATACGGAGATGGCCGCCCGGGGGTTAGTCTCCAGCGTCCGCCTCATGGAGGC
CAGGGTGGTACCAGCCCCGCAAAAGGCCGCGACCAAACTCCAGGTGCCGGTAGGAGAGAAGGTCCTGTACATTCGCCGCT
CCCTCTTGGCGGACGGCGAGCCGATGGCCTACGACCGTAAGTACCTGCGCTATGATCGTGGTCGGCCGATCCTTGAAAAT
GAGCTCCAGTACCAGGCTCTACCGGAAATGGTGGAAAAACATGGCGAGGTACTGCCGGTAAGCAGTCAGATGACCCTGCA
GGCAACAGTTCTAAATGAAGAAGAAGCCCGTGCCCTGCGCGTTGCTCCGGGAACGCCAGCTTTTTTACTGGAACAAATTC
TTTTTGATAATACGGAAAGGCCGGTGGGGTGGGGATGGTGCCTGTACCGCGGCGACAGGTACCAGTTAAGCTCCCAGTCG
CCTATTTTCTAA

Upstream 100 bases:

>100_bases
ATCCAGGGTCCCTGGGAGGACGACTTTCTAAAAGTGGAACCCCGGCAAGAAATATCTATTAGAGTTTTCAGGAACCCAGA
GGCAGGTGAAAAATGAAAAA

Downstream 100 bases:

>100_bases
TTTACACCAAAAATCTGGAGGTGGACCGGATGAGCCTCTTGGCCCAGGCTATGGGAAAATTGGAAGAAAAAAGGGTACTG
GAGCTTGTCAGCCACAGCCT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MVIDKNSFIPPYYQLAQILEQQIRSGQYRPGDTLPSEAELSEKYGLSRMTVRRSLSQLARAGLIYSEQGKGTFVSRPRLD
RAVFVMEEFHTEMAARGLVSSVRLMEARVVPAPQKAATKLQVPVGEKVLYIRRSLLADGEPMAYDRKYLRYDRGRPILEN
ELQYQALPEMVEKHGEVLPVSSQMTLQATVLNEEEARALRVAPGTPAFLLEQILFDNTERPVGWGWCLYRGDRYQLSSQS
PIF

Sequences:

>Translated_243_residues
MVIDKNSFIPPYYQLAQILEQQIRSGQYRPGDTLPSEAELSEKYGLSRMTVRRSLSQLARAGLIYSEQGKGTFVSRPRLD
RAVFVMEEFHTEMAARGLVSSVRLMEARVVPAPQKAATKLQVPVGEKVLYIRRSLLADGEPMAYDRKYLRYDRGRPILEN
ELQYQALPEMVEKHGEVLPVSSQMTLQATVLNEEEARALRVAPGTPAFLLEQILFDNTERPVGWGWCLYRGDRYQLSSQS
PIF
>Mature_243_residues
MVIDKNSFIPPYYQLAQILEQQIRSGQYRPGDTLPSEAELSEKYGLSRMTVRRSLSQLARAGLIYSEQGKGTFVSRPRLD
RAVFVMEEFHTEMAARGLVSSVRLMEARVVPAPQKAATKLQVPVGEKVLYIRRSLLADGEPMAYDRKYLRYDRGRPILEN
ELQYQALPEMVEKHGEVLPVSSQMTLQATVLNEEEARALRVAPGTPAFLLEQILFDNTERPVGWGWCLYRGDRYQLSSQS
PIF

Specific function: Acts as a weak repressor of yflG expression [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082252, Length=227, Percent_Identity=26.8722466960352, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1786950, Length=140, Percent_Identity=30.7142857142857, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI1790118, Length=225, Percent_Identity=20.8888888888889, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788418, Length=225, Percent_Identity=22.2222222222222, Blast_Score=71, Evalue=6e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 27684; Mature: 27684

Theoretical pI: Translated: 8.83; Mature: 8.83

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVIDKNSFIPPYYQLAQILEQQIRSGQYRPGDTLPSEAELSEKYGLSRMTVRRSLSQLAR
CEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHH
AGLIYSEQGKGTFVSRPRLDRAVFVMEEFHTEMAARGLVSSVRLMEARVVPAPQKAATKL
HCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCEE
QVPVGEKVLYIRRSLLADGEPMAYDRKYLRYDRGRPILENELQYQALPEMVEKHGEVLPV
ECCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCEEEC
SSQMTLQATVLNEEEARALRVAPGTPAFLLEQILFDNTERPVGWGWCLYRGDRYQLSSQS
CCCEEEEEEECCCHHCCEEEECCCCHHHHHHHHHHCCCCCCCCCEEEEEECCEEEECCCC
PIF
CCC
>Mature Secondary Structure
MVIDKNSFIPPYYQLAQILEQQIRSGQYRPGDTLPSEAELSEKYGLSRMTVRRSLSQLAR
CEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHH
AGLIYSEQGKGTFVSRPRLDRAVFVMEEFHTEMAARGLVSSVRLMEARVVPAPQKAATKL
HCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCEE
QVPVGEKVLYIRRSLLADGEPMAYDRKYLRYDRGRPILENELQYQALPEMVEKHGEVLPV
ECCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCEEEC
SSQMTLQATVLNEEEARALRVAPGTPAFLLEQILFDNTERPVGWGWCLYRGDRYQLSSQS
CCCEEEEEEECCCHHCCEEEECCCCHHHHHHHHHHCCCCCCCCCEEEEEECCEEEECCCC
PIF
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]