Click here to switch to the map view.

The map label for this gene is yagI [H]

Identifier: 83590026

GI number: 83590026

Start: 1208746

End: 1209534

Strand: Reverse

Name: yagI [H]

Synonym: Moth_1178

Alternate gene names: 83590026

Gene position: 1209534-1208746 (Counterclockwise)

Preceding gene: 83590027

Following gene: 83590025

Centisome position: 46.01

GC content: 53.74

Gene sequence:

>789_bases
TTGCCGGTGACCAGGGTTAATAAAACAAAGGGTGTCCAGGCAGTCGACCGGGCCCTGACCATCCTGGAGGTCATGGCCCG
GGAAGGCTCCCCCATGATGCTCTCTGCCATTAGCGCCGAGTTGCGGCTAAACATCAGTACCGTCCACCGTTTATTAAACG
CTCTGGCGGCTCATGGTCTGGTGGAACAGGAGCCCTACCAGGGCCGCTACCGCCTGGGGATCAAAGCCTTTGAAATAGGT
AACCGGGCCCTCTACAGCCTGGATATCCGGGCTATCGCCCGCCCCTTACTAAACCAGCTGGTGGATGATTTTAACGAAAC
AGTCAACCTCTCAATTCTCGATAAGTATGAGGTTGTTTACATTGACCAGGTGGAGTCCAATCAGATTATAAAGATGCTGG
CCCGGCCCGGTACCAGGGCTCCGGCCTACTGTACCGCCGCCGGCAAAGTACTGCTGGCTTATCTGGATGATAAACTGCTG
ACCAGGTACCTTAAAGATGTACCCCTTTTACCTTATACGGCGGCAACTATCAGCGAACCTCAGCAGCTCAGGTATGAGTT
GCAAAAAATACGCAGCCAGGGTTTTGCCCTGGATCAAGGTGAGAGGGAAGATGAGGTTCGCTGTGTAGCAGCGCCGGTAT
TCAACCATGAGGATAAAGTTATCGCTGCCGTAAGCTTATCAGGCCCGGCGAACCGTATACCAACAGAAGTGTTAACCGGT
AGGTTGGCCACGGCTGTCGTTCAGGTTGCCCTGAAGATTAGTCAGCACCTGGGTTACCGGTGCTCGTAA

Upstream 100 bases:

>100_bases
GCCGAAACAGGTATACCCTTTATTACCGACGTTCAGGACGAATTAGCCCGGAAGATTCTCCTTAGTTAATTAGATTAATC
CTCACCAGGAGGGAGCTGAC

Downstream 100 bases:

>100_bases
AATCTAGATCCAGGTCGTAATGGGAGCAGGTATTTTAGAGTCTTTTATGGGTAATACTAACATCAAACCTAATATTAACC
ACAGGGGGTTTGATGTTATG

Product: IclR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 261

Protein sequence:

>262_residues
MPVTRVNKTKGVQAVDRALTILEVMAREGSPMMLSAISAELRLNISTVHRLLNALAAHGLVEQEPYQGRYRLGIKAFEIG
NRALYSLDIRAIARPLLNQLVDDFNETVNLSILDKYEVVYIDQVESNQIIKMLARPGTRAPAYCTAAGKVLLAYLDDKLL
TRYLKDVPLLPYTAATISEPQQLRYELQKIRSQGFALDQGEREDEVRCVAAPVFNHEDKVIAAVSLSGPANRIPTEVLTG
RLATAVVQVALKISQHLGYRCS

Sequences:

>Translated_262_residues
MPVTRVNKTKGVQAVDRALTILEVMAREGSPMMLSAISAELRLNISTVHRLLNALAAHGLVEQEPYQGRYRLGIKAFEIG
NRALYSLDIRAIARPLLNQLVDDFNETVNLSILDKYEVVYIDQVESNQIIKMLARPGTRAPAYCTAAGKVLLAYLDDKLL
TRYLKDVPLLPYTAATISEPQQLRYELQKIRSQGFALDQGEREDEVRCVAAPVFNHEDKVIAAVSLSGPANRIPTEVLTG
RLATAVVQVALKISQHLGYRCS
>Mature_261_residues
PVTRVNKTKGVQAVDRALTILEVMAREGSPMMLSAISAELRLNISTVHRLLNALAAHGLVEQEPYQGRYRLGIKAFEIGN
RALYSLDIRAIARPLLNQLVDDFNETVNLSILDKYEVVYIDQVESNQIIKMLARPGTRAPAYCTAAGKVLLAYLDDKLLT
RYLKDVPLLPYTAATISEPQQLRYELQKIRSQGFALDQGEREDEVRCVAAPVFNHEDKVIAAVSLSGPANRIPTEVLTGR
LATAVVQVALKISQHLGYRCS

Specific function: Unknown

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI1786468, Length=248, Percent_Identity=39.1129032258064, Blast_Score=171, Evalue=5e-44,
Organism=Escherichia coli, GI87082359, Length=248, Percent_Identity=33.0645161290323, Blast_Score=150, Evalue=1e-37,
Organism=Escherichia coli, GI1788131, Length=248, Percent_Identity=34.6774193548387, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI1786715, Length=253, Percent_Identity=31.6205533596838, Blast_Score=130, Evalue=8e-32,
Organism=Escherichia coli, GI1788581, Length=253, Percent_Identity=34.3873517786561, Blast_Score=126, Evalue=1e-30,
Organism=Escherichia coli, GI1789999, Length=252, Percent_Identity=33.7301587301587, Blast_Score=119, Evalue=1e-28,
Organism=Escherichia coli, GI1790752, Length=257, Percent_Identity=28.7937743190661, Blast_Score=97, Evalue=2e-21,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 29056; Mature: 28925

Theoretical pI: Translated: 8.73; Mature: 8.73

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVTRVNKTKGVQAVDRALTILEVMAREGSPMMLSAISAELRLNISTVHRLLNALAAHGL
CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHEECHHHHHHHHHHHHHCCC
VEQEPYQGRYRLGIKAFEIGNRALYSLDIRAIARPLLNQLVDDFNETVNLSILDKYEVVY
CCCCCCCCEEEECEEEEECCCEEEEEHHHHHHHHHHHHHHHHHHHHEEEEEEEECEEEEE
IDQVESNQIIKMLARPGTRAPAYCTAAGKVLLAYLDDKLLTRYLKDVPLLPYTAATISEP
EECCCCHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCH
QQLRYELQKIRSQGFALDQGEREDEVRCVAAPVFNHEDKVIAAVSLSGPANRIPTEVLTG
HHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCCCCHHHHHH
RLATAVVQVALKISQHLGYRCS
HHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
PVTRVNKTKGVQAVDRALTILEVMAREGSPMMLSAISAELRLNISTVHRLLNALAAHGL
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHEECHHHHHHHHHHHHHCCC
VEQEPYQGRYRLGIKAFEIGNRALYSLDIRAIARPLLNQLVDDFNETVNLSILDKYEVVY
CCCCCCCCEEEECEEEEECCCEEEEEHHHHHHHHHHHHHHHHHHHHEEEEEEEECEEEEE
IDQVESNQIIKMLARPGTRAPAYCTAAGKVLLAYLDDKLLTRYLKDVPLLPYTAATISEP
EECCCCHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCH
QQLRYELQKIRSQGFALDQGEREDEVRCVAAPVFNHEDKVIAAVSLSGPANRIPTEVLTG
HHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCCCCHHHHHH
RLATAVVQVALKISQHLGYRCS
HHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]