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The map label for this gene is ybiS [C]

Identifier: 83588974

GI number: 83588974

Start: 97882

End: 98766

Strand: Reverse

Name: ybiS [C]

Synonym: Moth_0101

Alternate gene names: 83588974

Gene position: 98766-97882 (Counterclockwise)

Preceding gene: 83588989

Following gene: 83588950

Centisome position: 3.76

GC content: 60.9

Gene sequence:

>885_bases
ATGAACCCTGCCCTAGCCCATGGGCCCTGCCCCTGTAACGATACTGATTCCCGGGTCCTGGAGTTAACCGAGCCCCCCCT
TACGGGCCTGGACGTCAGTGATCTCCAGCTGCGCCTGGCCCAGATGGGTTATTACTTCGGTCCCCTGAACGGTATTTATA
ATAAAACCACCCAGCGGGCCGTAATTAACTTTCAACGGGAACACCATTTAACCCCCCTGGGCCGGGTCGGGCCGGCTACC
TGGAAGGAACTAGCCCGGGGTATCGCAGTCGCCCACCAGGCCCCGGCCGGCCCACCTCCCGGGAAAAACTTGAAGATTGT
CATCGATACCGAACGCCTGGTACTGACAATTCTGGTGGATGGCCGGGTCTTTCAAAAATACCCCGTGGCAATAGGCAAAT
ACACCAGCCCCTCGCCCGTCGGCGAGTGGAAAATCGTCGACAAGGCTTATGAGTCCGGGGGTGCCTTTGGCACCCGTTGG
ATGGGCCTCAATGTCCCCTGGGGCAACTACGGCATCCACGGCACCAACCGGCCCTGGTCCATCGGCTGGGCGGCCTCGGC
GGGCTGTTTCCGCATGTTCAACGAGGATATCGAGACCATCTACCCCTGGATCCCGGTGGGAACCCCGGTAGTAGTTAAAG
GGCCCTATACCATGCCCACCGGTCCCCTGAAACCCGGCCAGGGCTCCCCGGAGGTCATCACCCTGCAGGCCCGCCTACGG
GAAAAGGGTTTTTACCTTTTCGGGCCCACTGATGGCGACTACGGCCTGATGACCGAGCTGGCCGTCAAGGAGTTCCAGCT
CTACCACGGGCTCACGGCTACCGGGGTGGCTGATGCCCGGACCCTGAGGGCCCTGGGGTTCGACGTACCCCTTTCAGATA
CTTAA

Upstream 100 bases:

>100_bases
CCCGGCGCATACTATTCTGGAGGTATTTTACTGGGAGGAAAGGACTATGGTTCACGGGTACTGTCGCATCCTGGTTTTCC
TGGCCTTTTTTTGCCTCTTT

Downstream 100 bases:

>100_bases
GGACCCCTGCCACAGCCCGGCGGGCATTCTCCTGGAGCTGTACCAGTTCCCCCGGCGTGGCCCCGTCCAGGTGAATGCCC
GCGACGACTACCACCGGGGC

Product: ErfK/YbiS/YcfS/YnhG

Products: NA

Alternate protein names: Spore protein YkuD homolog [H]

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MNPALAHGPCPCNDTDSRVLELTEPPLTGLDVSDLQLRLAQMGYYFGPLNGIYNKTTQRAVINFQREHHLTPLGRVGPAT
WKELARGIAVAHQAPAGPPPGKNLKIVIDTERLVLTILVDGRVFQKYPVAIGKYTSPSPVGEWKIVDKAYESGGAFGTRW
MGLNVPWGNYGIHGTNRPWSIGWAASAGCFRMFNEDIETIYPWIPVGTPVVVKGPYTMPTGPLKPGQGSPEVITLQARLR
EKGFYLFGPTDGDYGLMTELAVKEFQLYHGLTATGVADARTLRALGFDVPLSDT

Sequences:

>Translated_294_residues
MNPALAHGPCPCNDTDSRVLELTEPPLTGLDVSDLQLRLAQMGYYFGPLNGIYNKTTQRAVINFQREHHLTPLGRVGPAT
WKELARGIAVAHQAPAGPPPGKNLKIVIDTERLVLTILVDGRVFQKYPVAIGKYTSPSPVGEWKIVDKAYESGGAFGTRW
MGLNVPWGNYGIHGTNRPWSIGWAASAGCFRMFNEDIETIYPWIPVGTPVVVKGPYTMPTGPLKPGQGSPEVITLQARLR
EKGFYLFGPTDGDYGLMTELAVKEFQLYHGLTATGVADARTLRALGFDVPLSDT
>Mature_294_residues
MNPALAHGPCPCNDTDSRVLELTEPPLTGLDVSDLQLRLAQMGYYFGPLNGIYNKTTQRAVINFQREHHLTPLGRVGPAT
WKELARGIAVAHQAPAGPPPGKNLKIVIDTERLVLTILVDGRVFQKYPVAIGKYTSPSPVGEWKIVDKAYESGGAFGTRW
MGLNVPWGNYGIHGTNRPWSIGWAASAGCFRMFNEDIETIYPWIPVGTPVVVKGPYTMPTGPLKPGQGSPEVITLQARLR
EKGFYLFGPTDGDYGLMTELAVKEFQLYHGLTATGVADARTLRALGFDVPLSDT

Specific function: Probable enzyme that may play an important role in cell wall biology [H]

COG id: COG1376

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Spore wall. Note=Probably localized either on the surface of the outer spore membrane and/or in the inner spore coat (By similarity) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

None

Paralogues:

None

Copy number: 160 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 160 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018392
- InterPro:   IPR002482
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01476 LysM; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 32090; Mature: 32090

Theoretical pI: Translated: 8.06; Mature: 8.06

Prosite motif: PS00639 THIOL_PROTEASE_HIS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPALAHGPCPCNDTDSRVLELTEPPLTGLDVSDLQLRLAQMGYYFGPLNGIYNKTTQRA
CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCEECCCCHHHCCHHHHH
VINFQREHHLTPLGRVGPATWKELARGIAVAHQAPAGPPPGKNLKIVIDTERLVLTILVD
HEEEHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCEEEEEEEEC
GRVFQKYPVAIGKYTSPSPVGEWKIVDKAYESGGAFGTRWMGLNVPWGNYGIHGTNRPWS
CEEEEECCEEEECCCCCCCCCCEEEHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCEE
IGWAASAGCFRMFNEDIETIYPWIPVGTPVVVKGPYTMPTGPLKPGQGSPEVITLQARLR
EECCCCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEEEHH
EKGFYLFGPTDGDYGLMTELAVKEFQLYHGLTATGVADARTLRALGFDVPLSDT
HCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MNPALAHGPCPCNDTDSRVLELTEPPLTGLDVSDLQLRLAQMGYYFGPLNGIYNKTTQRA
CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCEECCCCHHHCCHHHHH
VINFQREHHLTPLGRVGPATWKELARGIAVAHQAPAGPPPGKNLKIVIDTERLVLTILVD
HEEEHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCEEEEEEEEC
GRVFQKYPVAIGKYTSPSPVGEWKIVDKAYESGGAFGTRWMGLNVPWGNYGIHGTNRPWS
CEEEEECCEEEECCCCCCCCCCEEEHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCEE
IGWAASAGCFRMFNEDIETIYPWIPVGTPVVVKGPYTMPTGPLKPGQGSPEVITLQARLR
EECCCCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEEEHH
EKGFYLFGPTDGDYGLMTELAVKEFQLYHGLTATGVADARTLRALGFDVPLSDT
HCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA