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The map label for this gene is abrB [H]

Identifier: 83588920

GI number: 83588920

Start: 46918

End: 47175

Strand: Reverse

Name: abrB [H]

Synonym: Moth_0047

Alternate gene names: 83588920

Gene position: 47175-46918 (Counterclockwise)

Preceding gene: 83588927

Following gene: 83588891

Centisome position: 1.79

GC content: 53.1

Gene sequence:

>258_bases
ATGATTAAATCCACTGGTATTGTCCGGAAAGTGGACGAGCTTGGCCGGGTGGTCATTCCCATTGAATTACGCCGCACCCT
GGGTATCGATGAACGCGATGCCCTGGAGATTTACGTCGATCATGAGAAGATCATCCTCAAGAAATATGAGCCGGCCTGCG
TCTTCTGCGGCAACGCCGAGGATATCGTTAACTTCCACGGAAAGAACGTCTGCCGCGAATGCTTGGAGGCCATGAGCCAG
CAGGCCAAAGCCGTCTAA

Upstream 100 bases:

>100_bases
GCTATTTTTTTGTCCAAAATATGGTTGACTTTTACTGGAAGGATTGGTACCATATAGACAGGTTGTCGAAACATGTTGAA
ACAGGGAGGGGGAGAAAGCC

Downstream 100 bases:

>100_bases
GGAAATTCAGGGGACAAAAGGGGCACCAGGGGGTGTCCCTTTTTTAATCCCCTGAAGGGCTAACAGCTTTGTCTCCCGGT
AGGCTCCCACCCCTTGCGGT

Product: AbrB family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 85; Mature: 85

Protein sequence:

>85_residues
MIKSTGIVRKVDELGRVVIPIELRRTLGIDERDALEIYVDHEKIILKKYEPACVFCGNAEDIVNFHGKNVCRECLEAMSQ
QAKAV

Sequences:

>Translated_85_residues
MIKSTGIVRKVDELGRVVIPIELRRTLGIDERDALEIYVDHEKIILKKYEPACVFCGNAEDIVNFHGKNVCRECLEAMSQ
QAKAV
>Mature_85_residues
MIKSTGIVRKVDELGRVVIPIELRRTLGIDERDALEIYVDHEKIILKKYEPACVFCGNAEDIVNFHGKNVCRECLEAMSQ
QAKAV

Specific function: Ambiactive repressor and activator of the transcription of genes expressed during the transition state between vegetative growth and the onset of stationary phase and sporulation. It controls the expression of genes spovG and tycA. AbrB binds to the tycA

COG id: COG2002

COG function: function code K; Regulators of stationary/sporulation gene expression

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis abh and spoVT [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006339
- InterPro:   IPR007159 [H]

Pfam domain/function: PF04014 SpoVT_AbrB [H]

EC number: NA

Molecular weight: Translated: 9630; Mature: 9630

Theoretical pI: Translated: 6.50; Mature: 6.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
4.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
7.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKSTGIVRKVDELGRVVIPIELRRTLGIDERDALEIYVDHEKIILKKYEPACVFCGNAE
CCCCCHHHHHHHHCCCEEEEEEEHHHCCCCCCCEEEEEECCCEEEEEECCCEEEEECCHH
DIVNFHGKNVCRECLEAMSQQAKAV
HHHHCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIKSTGIVRKVDELGRVVIPIELRRTLGIDERDALEIYVDHEKIILKKYEPACVFCGNAE
CCCCCHHHHHHHHCCCEEEEEEEHHHCCCCCCCEEEEEECCCEEEEEECCCEEEEECCHH
DIVNFHGKNVCRECLEAMSQQAKAV
HHHHCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3145384; 2554317; 7584024; 9384377; 2504584; 1908787 [H]