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The map label for this gene is ydeB [H]

Identifier: 83313417

GI number: 83313417

Start: 4723224

End: 4723727

Strand: Reverse

Name: ydeB [H]

Synonym: amb4318

Alternate gene names: 83313417

Gene position: 4723727-4723224 (Counterclockwise)

Preceding gene: 83313418

Following gene: 83313416

Centisome position: 95.1

GC content: 63.49

Gene sequence:

>504_bases
TTGTTGAAGATGACGATCGTTTCTTTCACCCAGGGCGACTATGTGGTCTATCCCACCCACGGCGTGGGTCAGGTGGTGGC
CGTTGAAACCCAGGAAATCGGCGGCATGAAGCTGCAACTGTTCGTCATCACCTTCGATCGCGACCGGATGACGCTGCGCG
TACCGGTGACCAAGGCCCAGAAGTCGGGGCTGCGCATGCTGTCGTCCCGCTCGGTCATGGACACCGCGCTGTCGACCCTC
AAGGGCCGCGCCAAGGTCAAGCGCACCATGTGGAGCCGTCGCGCCCAGGAATACGAGGCCAAGATCAATTCCGGCGATCC
CGTTTCCATCGCCGAGGTGGTCCGCGACCTGCACCGCAACGCCAATCAGCCCGACCAGTCCTATTCCGAGCGTCAGATCT
ACGAGGCCGCGCTGGAGCGTCTGGCCTCGGAATTGGCGGCGGTGGAGCGGATCGACACCCAGGCGGCGACCGAGAAGCTG
CAGGGCCTGCTCGAAGCGGCTTGA

Upstream 100 bases:

>100_bases
TTGAACCAGCCCGTCAAGGGCGCGGCTGGCGAGCATCTTTCGTTTGTTGCGTTGGGCGTATCGGGCGCTTTTGCCGGATC
CGGACCTTCTGTCGAGGGAA

Downstream 100 bases:

>100_bases
TGTTTGGGCCGGCGGCTGCGACCATGACACCCGGTTGGCGAACCCGAGCGGATTGATGATCGTCGAAGCCGAACGAACGT
CCACGACCCAGGCTGATTCC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 167; Mature: 167

Protein sequence:

>167_residues
MLKMTIVSFTQGDYVVYPTHGVGQVVAVETQEIGGMKLQLFVITFDRDRMTLRVPVTKAQKSGLRMLSSRSVMDTALSTL
KGRAKVKRTMWSRRAQEYEAKINSGDPVSIAEVVRDLHRNANQPDQSYSERQIYEAALERLASELAAVERIDTQAATEKL
QGLLEAA

Sequences:

>Translated_167_residues
MLKMTIVSFTQGDYVVYPTHGVGQVVAVETQEIGGMKLQLFVITFDRDRMTLRVPVTKAQKSGLRMLSSRSVMDTALSTL
KGRAKVKRTMWSRRAQEYEAKINSGDPVSIAEVVRDLHRNANQPDQSYSERQIYEAALERLASELAAVERIDTQAATEKL
QGLLEAA
>Mature_167_residues
MLKMTIVSFTQGDYVVYPTHGVGQVVAVETQEIGGMKLQLFVITFDRDRMTLRVPVTKAQKSGLRMLSSRSVMDTALSTL
KGRAKVKRTMWSRRAQEYEAKINSGDPVSIAEVVRDLHRNANQPDQSYSERQIYEAALERLASELAAVERIDTQAATEKL
QGLLEAA

Specific function: Unknown

COG id: COG1329

COG function: function code K; Transcriptional regulators, similar to M. xanthus CarD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003711 [H]

Pfam domain/function: PF02559 CarD_TRCF [H]

EC number: NA

Molecular weight: Translated: 18661; Mature: 18661

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKMTIVSFTQGDYVVYPTHGVGQVVAVETQEIGGMKLQLFVITFDRDRMTLRVPVTKAQ
CEEEEEEEECCCCEEEECCCCCCEEEEEEHHCCCCEEEEEEEEEECCCCEEEEECCHHHH
KSGLRMLSSRSVMDTALSTLKGRAKVKRTMWSRRAQEYEAKINSGDPVSIAEVVRDLHRN
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHC
ANQPDQSYSERQIYEAALERLASELAAVERIDTQAATEKLQGLLEAA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLKMTIVSFTQGDYVVYPTHGVGQVVAVETQEIGGMKLQLFVITFDRDRMTLRVPVTKAQ
CEEEEEEEECCCCEEEECCCCCCEEEEEEHHCCCCEEEEEEEEEECCCCEEEEECCHHHH
KSGLRMLSSRSVMDTALSTLKGRAKVKRTMWSRRAQEYEAKINSGDPVSIAEVVRDLHRN
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHC
ANQPDQSYSERQIYEAALERLASELAAVERIDTQAATEKLQGLLEAA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]