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The map label for this gene is ycdR [C]

Identifier: 83313414

GI number: 83313414

Start: 4719725

End: 4721095

Strand: Reverse

Name: ycdR [C]

Synonym: amb4315

Alternate gene names: 83313414

Gene position: 4721095-4719725 (Counterclockwise)

Preceding gene: 83313415

Following gene: 83313411

Centisome position: 95.05

GC content: 69.37

Gene sequence:

>1371_bases
ATGATGGCGGTAACCGGCGCCGCCATGGTCTTGTCCAGGTTGCCGGGCGCCAGGGCGGGTTTGAGGCGCTGCTTGGCCTC
GGCCGAGCGCACGAAGACCACGCGCATGGGCTGGCAATTGACGCTGGTCGGCCCCATGCGGGCCAGGTCCCAGGCCTGGC
GCAGCAAGGCGTCGGGCACGGGGGTTTCCTTGAATTTGGAATGTGTGCGGGCCTGGCGGAACAGCCTGTCCAGCGCCGTG
GGGTCGAGAATATCGCTCATATCCGCCTCTCCTCTTGAACTTTCACCCGCGAATGCGGCAAACATCGGGAATGTAGGCGC
CGAGAGCGGCGCCCAACAGGGGGCGATTGTGAAACAGTCTGTTGTCTTGGCGCTGCTGGTGTGTCTGGCCGCGGTCGTGG
GGCTGCCGGTTTGCGGTTCCGCCGCCTTGGCCGCCGAGTCCGCCGTGGTGCTGGTCTATCATCGCTTCGATGACGACCGG
GTGCCGGCGCTCAACACCACCACCGAGCTGCTGGCCTCCCATGTGGCGGAGTTGAAGACCGGCGGCTATGCCGTGCTGCC
GCTGGCCGAGATCGTCTCGGCGCTGCGGGCCGGTCGGTCGCTGCCGGACAAGGCGGTGGCCATTACCGTCGACGACGCCT
CGGTGGGGTTCTATGCCGGAGCATGGCCGCTGCTGAAGAAGGCGGGGCTGCCCGTCACCCTGTTCCTGGCCACCGACGAG
GTGGATCGTGGCGGCGCCGAGGTGATGAGCTGGGGGCAGATCCGCGAACTGGCCGCCGCCGGGTTGGGGATCGGCATGCA
GGGCGCCGCCCGGCTGCGCCTGCCCAAGGCTTCGGCCGAGCAGATCACCGCCGATCTGGCCCGCGCCAGGGCCCGCCTGG
ACAAGGAACTGGGCCTGGGCACCGAACTGTTCGCCTGGCCCTGGGGCGAGGCCAGCGCCGAGGCCGAAGACGTGCTGCGC
CGTTCGGGCTTTGCCGCCGCCTTCGGCCAGCATTCCGGTGCCGCCTGGGCCAAGGGCGATCCGTTCTTCCTGCCGCGCTT
CGCCCAAAGCTCGGCCTATGGCGACATGCAGCGCTTCCGGCTGGCGGCCCGCTCCCTGCCCCTGCCGGCCGTGGATATCA
CGCCGGAGGATCCGGCCATCAAGGTCAATCCGCCGGCCTTCGGCTTCACCCTGGCCGAGGACGTGCCCGGCATCGACGGG
CTGTCGTGCTTCGCCTCCCATCAGGGGCAGGTCAGGGTTGAACGCCTGGGGCCGCGGGTCGAAGTGCGCATGTCCAAGCC
CATTCCCTCGGGGCGGGGGCGGCTGAACTGCACCGTGCCGGCCCTGGAAGGCCGCTGGCGCTGGTTCGGCTGGCAATTCG
CGGTACCCTGA

Upstream 100 bases:

>100_bases
CGTGGACTGGATCATGGCCTCGTTGCCCACGAACCAGGCGCGCGCGTCGGTGTGGGGGAACAGCTTGGGCAGCTTCTCGT
AGAACTCCATGTCGTGGGCG

Downstream 100 bases:

>100_bases
ACCCTCTATTCCTCGAGGGCCACATCCCAGTAGAGGAAATCCATCCAGGTCTCGTGCAGGTCGTCCTTCACGTGGGCGCA
GTGCCGGGCCGCCACGTCCA

Product: xylanase/chitin deacetylase

Products: NA

Alternate protein names: Polysaccharide Deacetylase Family Protein; Xylanase/Chitin Deacetylase; Polysaccharide Deacetylase Domain-Containing Protein; Polysaccharide Deacetylase Protein; Glycoside Hydrolase Family 2 Protein; Polysaccharide Deacetylase-Like Protein; Glycosy Hydrolase Family Protein; Regulatory Protein LacI; Glycoside Deacetylase; Polysaccharide Deacetylase Pda4D; Glycosyltransferase

Number of amino acids: Translated: 456; Mature: 456

Protein sequence:

>456_residues
MMAVTGAAMVLSRLPGARAGLRRCLASAERTKTTRMGWQLTLVGPMRARSQAWRSKASGTGVSLNLECVRAWRNSLSSAV
GSRISLISASPLELSPANAANIGNVGAESGAQQGAIVKQSVVLALLVCLAAVVGLPVCGSAALAAESAVVLVYHRFDDDR
VPALNTTTELLASHVAELKTGGYAVLPLAEIVSALRAGRSLPDKAVAITVDDASVGFYAGAWPLLKKAGLPVTLFLATDE
VDRGGAEVMSWGQIRELAAAGLGIGMQGAARLRLPKASAEQITADLARARARLDKELGLGTELFAWPWGEASAEAEDVLR
RSGFAAAFGQHSGAAWAKGDPFFLPRFAQSSAYGDMQRFRLAARSLPLPAVDITPEDPAIKVNPPAFGFTLAEDVPGIDG
LSCFASHQGQVRVERLGPRVEVRMSKPIPSGRGRLNCTVPALEGRWRWFGWQFAVP

Sequences:

>Translated_456_residues
MMAVTGAAMVLSRLPGARAGLRRCLASAERTKTTRMGWQLTLVGPMRARSQAWRSKASGTGVSLNLECVRAWRNSLSSAV
GSRISLISASPLELSPANAANIGNVGAESGAQQGAIVKQSVVLALLVCLAAVVGLPVCGSAALAAESAVVLVYHRFDDDR
VPALNTTTELLASHVAELKTGGYAVLPLAEIVSALRAGRSLPDKAVAITVDDASVGFYAGAWPLLKKAGLPVTLFLATDE
VDRGGAEVMSWGQIRELAAAGLGIGMQGAARLRLPKASAEQITADLARARARLDKELGLGTELFAWPWGEASAEAEDVLR
RSGFAAAFGQHSGAAWAKGDPFFLPRFAQSSAYGDMQRFRLAARSLPLPAVDITPEDPAIKVNPPAFGFTLAEDVPGIDG
LSCFASHQGQVRVERLGPRVEVRMSKPIPSGRGRLNCTVPALEGRWRWFGWQFAVP
>Mature_456_residues
MMAVTGAAMVLSRLPGARAGLRRCLASAERTKTTRMGWQLTLVGPMRARSQAWRSKASGTGVSLNLECVRAWRNSLSSAV
GSRISLISASPLELSPANAANIGNVGAESGAQQGAIVKQSVVLALLVCLAAVVGLPVCGSAALAAESAVVLVYHRFDDDR
VPALNTTTELLASHVAELKTGGYAVLPLAEIVSALRAGRSLPDKAVAITVDDASVGFYAGAWPLLKKAGLPVTLFLATDE
VDRGGAEVMSWGQIRELAAAGLGIGMQGAARLRLPKASAEQITADLARARARLDKELGLGTELFAWPWGEASAEAEDVLR
RSGFAAAFGQHSGAAWAKGDPFFLPRFAQSSAYGDMQRFRLAARSLPLPAVDITPEDPAIKVNPPAFGFTLAEDVPGIDG
LSCFASHQGQVRVERLGPRVEVRMSKPIPSGRGRLNCTVPALEGRWRWFGWQFAVP

Specific function: Unknown

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787260, Length=273, Percent_Identity=24.5421245421245, Blast_Score=69, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 48082; Mature: 48082

Theoretical pI: Translated: 9.95; Mature: 9.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMAVTGAAMVLSRLPGARAGLRRCLASAERTKTTRMGWQLTLVGPMRARSQAWRSKASGT
CCEECHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHCCCC
GVSLNLECVRAWRNSLSSAVGSRISLISASPLELSPANAANIGNVGAESGAQQGAIVKQS
CEEEEHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
VVLALLVCLAAVVGLPVCGSAALAAESAVVLVYHRFDDDRVPALNTTTELLASHVAELKT
HHHHHHHHHHHHHCCCCCCCHHHHCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCC
GGYAVLPLAEIVSALRAGRSLPDKAVAITVDDASVGFYAGAWPLLKKAGLPVTLFLATDE
CCEEEEEHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCEEEEEEECC
VDRGGAEVMSWGQIRELAAAGLGIGMQGAARLRLPKASAEQITADLARARARLDKELGLG
CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCC
TELFAWPWGEASAEAEDVLRRSGFAAAFGQHSGAAWAKGDPFFLPRFAQSSAYGDMQRFR
CEEEEECCCCCCCHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHH
LAARSLPLPAVDITPEDPAIKVNPPAFGFTLAEDVPGIDGLSCFASHQGQVRVERLGPRV
HHHHCCCCCEEECCCCCCEEEECCCCCCEEHHHCCCCCCCHHHHHCCCCCEEEECCCCEE
EVRMSKPIPSGRGRLNCTVPALEGRWRWFGWQFAVP
EEEECCCCCCCCCEEEEEEECCCCCEEEEEEEECCC
>Mature Secondary Structure
MMAVTGAAMVLSRLPGARAGLRRCLASAERTKTTRMGWQLTLVGPMRARSQAWRSKASGT
CCEECHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHCCCC
GVSLNLECVRAWRNSLSSAVGSRISLISASPLELSPANAANIGNVGAESGAQQGAIVKQS
CEEEEHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
VVLALLVCLAAVVGLPVCGSAALAAESAVVLVYHRFDDDRVPALNTTTELLASHVAELKT
HHHHHHHHHHHHHCCCCCCCHHHHCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCC
GGYAVLPLAEIVSALRAGRSLPDKAVAITVDDASVGFYAGAWPLLKKAGLPVTLFLATDE
CCEEEEEHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCEEEEEEECC
VDRGGAEVMSWGQIRELAAAGLGIGMQGAARLRLPKASAEQITADLARARARLDKELGLG
CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCC
TELFAWPWGEASAEAEDVLRRSGFAAAFGQHSGAAWAKGDPFFLPRFAQSSAYGDMQRFR
CEEEEECCCCCCCHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHH
LAARSLPLPAVDITPEDPAIKVNPPAFGFTLAEDVPGIDGLSCFASHQGQVRVERLGPRV
HHHHCCCCCEEECCCCCCEEEECCCCCCEEHHHCCCCCCCHHHHHCCCCCEEEECCCCEE
EVRMSKPIPSGRGRLNCTVPALEGRWRWFGWQFAVP
EEEECCCCCCCCCEEEEEEECCCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA