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The map label for this gene is ydhC [H]

Identifier: 83313286

GI number: 83313286

Start: 4601847

End: 4602488

Strand: Reverse

Name: ydhC [H]

Synonym: amb4187

Alternate gene names: 83313286

Gene position: 4602488-4601847 (Counterclockwise)

Preceding gene: 83313288

Following gene: 83313283

Centisome position: 92.66

GC content: 68.54

Gene sequence:

>642_bases
GTGAAGCTGCAAAAGACCAATCTGGCCGATCAGGCCTATAAGGTGCTGCACGAGATGCTGCTGGGCGGCGGGCGCTTCAT
GCCCGGCGACAAGATCAGCGTCGAGGATCTGGCGCGCCAGCTGGGAGTCAGCCGTTCGCCGGTGTGGAACGCCATCGCCC
GGCTGGAAGCCGACGGCATCGTCGAGGTCTGGCCGCGTCACGGCGTGTTCTTCGTCGGCTTCGACAAGGGCCGCCTGATG
GACATCCTCGCCACCCGCGAGGCGCTGGAAGGCGCCGCCGCCCGTCTGGCCGCCGAGAAGGCGAGTCCCGAGCAGATCAA
GGCCCTGCGCGAGTCCATCGGCCTGCAGCGCTCGGCCGTGGCGGACAGCGCCCACGAGGCCTATGCGACCGAGGTGGAGC
GCTTTCACCGCCTGCTGGCCGAGGCCTCGGGCAATGTCGTGATGGTGGAGATCATCGAACGCCTGTGGGCGCGGACCAAG
GCCATGTGCATCCGCCCGGACCTGCGTCCCGCCTTGATGGACGAGCGGGTGGAGGAGCACGCGCGCATGGTCGAGGCGGT
GGTGCACCGCGACGGCGAAGCGGCCGAGAGCGAAATCCGTGCCCATATCCGCCGCATCGCCCAGGGTCTGAAGGGGGTGT
AG

Upstream 100 bases:

>100_bases
CTCATCACGCCACCTCATGTTTCATGTTACGTGATACATTATTCGCATTTGCCCCAAGAGTCCAGTTGGTGCATCATCCC
AGCAAGAGGGGAGGGCCAAG

Downstream 100 bases:

>100_bases
CCCATCGGCGCCACTCCCCGTCGGGGGCTTTTGCCCCCGATCCCTTCAGTTTCTTGAAAAACTGGTGGTTCGAAGGCTGC
GCCTCCGAACGGGTCAGGGC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 213; Mature: 213

Protein sequence:

>213_residues
MKLQKTNLADQAYKVLHEMLLGGGRFMPGDKISVEDLARQLGVSRSPVWNAIARLEADGIVEVWPRHGVFFVGFDKGRLM
DILATREALEGAAARLAAEKASPEQIKALRESIGLQRSAVADSAHEAYATEVERFHRLLAEASGNVVMVEIIERLWARTK
AMCIRPDLRPALMDERVEEHARMVEAVVHRDGEAAESEIRAHIRRIAQGLKGV

Sequences:

>Translated_213_residues
MKLQKTNLADQAYKVLHEMLLGGGRFMPGDKISVEDLARQLGVSRSPVWNAIARLEADGIVEVWPRHGVFFVGFDKGRLM
DILATREALEGAAARLAAEKASPEQIKALRESIGLQRSAVADSAHEAYATEVERFHRLLAEASGNVVMVEIIERLWARTK
AMCIRPDLRPALMDERVEEHARMVEAVVHRDGEAAESEIRAHIRRIAQGLKGV
>Mature_213_residues
MKLQKTNLADQAYKVLHEMLLGGGRFMPGDKISVEDLARQLGVSRSPVWNAIARLEADGIVEVWPRHGVFFVGFDKGRLM
DILATREALEGAAARLAAEKASPEQIKALRESIGLQRSAVADSAHEAYATEVERFHRLLAEASGNVVMVEIIERLWARTK
AMCIRPDLRPALMDERVEEHARMVEAVVHRDGEAAESEIRAHIRRIAQGLKGV

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=206, Percent_Identity=23.7864077669903, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1790780, Length=205, Percent_Identity=25.8536585365854, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1790032, Length=227, Percent_Identity=25.1101321585903, Blast_Score=61, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 23680; Mature: 23680

Theoretical pI: Translated: 7.24; Mature: 7.24

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLQKTNLADQAYKVLHEMLLGGGRFMPGDKISVEDLARQLGVSRSPVWNAIARLEADGI
CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCC
VEVWPRHGVFFVGFDKGRLMDILATREALEGAAARLAAEKASPEQIKALRESIGLQRSAV
EEECCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHH
ADSAHEAYATEVERFHRLLAEASGNVVMVEIIERLWARTKAMCIRPDLRPALMDERVEEH
HHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
ARMVEAVVHRDGEAAESEIRAHIRRIAQGLKGV
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKLQKTNLADQAYKVLHEMLLGGGRFMPGDKISVEDLARQLGVSRSPVWNAIARLEADGI
CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCC
VEVWPRHGVFFVGFDKGRLMDILATREALEGAAARLAAEKASPEQIKALRESIGLQRSAV
EEECCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHH
ADSAHEAYATEVERFHRLLAEASGNVVMVEIIERLWARTKAMCIRPDLRPALMDERVEEH
HHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
ARMVEAVVHRDGEAAESEIRAHIRRIAQGLKGV
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]