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The map label for this gene is arrD [H]

Identifier: 83313085

GI number: 83313085

Start: 4397260

End: 4397715

Strand: Reverse

Name: arrD [H]

Synonym: amb3986

Alternate gene names: 83313085

Gene position: 4397715-4397260 (Counterclockwise)

Preceding gene: 83313086

Following gene: 83313082

Centisome position: 88.54

GC content: 65.35

Gene sequence:

>456_bases
ATGACACGAGCCGTCAATGAAGCCGGACTGGCCCTCACCAAGGCTTCGGAGGGGCTGCGCCTCAAGAGCTATCTCTGCCC
GGCGCACAAGCTGACCGTCGGCTATGGCCATACCGGCCCCGACGTCATGGACGGCATGACCATCGACGAAGCCAGGGCCG
ACGAGTTGCTGGCCGCCGATCTGGCCCATGCCGGCGATGCCGTCACCAAGGCGGTGACGGTGGATCTGAACGACAATCAA
TATGCGGCGCTGTGCGATTTCGTCTTCAATCTGGGGGCGGGAGCCTTCCAGGGCTCGACGCTGCTGAAGAAGCTGAACGC
CGGCGACTATGCCGGAGCCTCGGATGAATTCCCCAAGTGGGACAAGGCCACCGTGGACGGCGTGAAGAAGGCCCTGCCCG
GCCTGACCAAGCGCCGCGCCGCCGAGCGCACCCTGTTCCTGACCGCCGAGGCCTGA

Upstream 100 bases:

>100_bases
CTGCAAGTAATGGCATCCACATCTAAAGCGACATGGACTTGGCTGATCATATTTCCGTAAGGTAGCGTCCACGCTGCAAT
CGGGAAGGAAAGGATGCGCC

Downstream 100 bases:

>100_bases
ACCACTTACTTCGGGCAGGGGTGGCGCTGGGGGTCGGCTTCGTCGCAGACCGCCACGCCGCGCAGAAACTGGGACCATTC
CTTCAGCATATCGGGCGGGA

Product: Phage-related lysozyme

Products: NA

Alternate protein names: Endolysin; Lysis protein; Muramidase [H]

Number of amino acids: Translated: 151; Mature: 150

Protein sequence:

>151_residues
MTRAVNEAGLALTKASEGLRLKSYLCPAHKLTVGYGHTGPDVMDGMTIDEARADELLAADLAHAGDAVTKAVTVDLNDNQ
YAALCDFVFNLGAGAFQGSTLLKKLNAGDYAGASDEFPKWDKATVDGVKKALPGLTKRRAAERTLFLTAEA

Sequences:

>Translated_151_residues
MTRAVNEAGLALTKASEGLRLKSYLCPAHKLTVGYGHTGPDVMDGMTIDEARADELLAADLAHAGDAVTKAVTVDLNDNQ
YAALCDFVFNLGAGAFQGSTLLKKLNAGDYAGASDEFPKWDKATVDGVKKALPGLTKRRAAERTLFLTAEA
>Mature_150_residues
TRAVNEAGLALTKASEGLRLKSYLCPAHKLTVGYGHTGPDVMDGMTIDEARADELLAADLAHAGDAVTKAVTVDLNDNQY
AALCDFVFNLGAGAFQGSTLLKKLNAGDYAGASDEFPKWDKATVDGVKKALPGLTKRRAAERTLFLTAEA

Specific function: Essential for lysis of bacterial cell wall, by showing cell wall hydrolyzing activity [H]

COG id: COG3772

COG function: function code R; Phage-related lysozyme (muraminidase)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 24 family [H]

Homologues:

Organism=Escherichia coli, GI1786768, Length=119, Percent_Identity=40.3361344537815, Blast_Score=88, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002196 [H]

Pfam domain/function: PF00959 Phage_lysozyme [H]

EC number: =3.2.1.17 [H]

Molecular weight: Translated: 15930; Mature: 15799

Theoretical pI: Translated: 5.68; Mature: 5.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRAVNEAGLALTKASEGLRLKSYLCPAHKLTVGYGHTGPDVMDGMTIDEARADELLAAD
CCCCCCCCCEEEEECCCCCEEHHHHCCCCEEEEECCCCCCHHHCCCCCCHHHHHHHHHHH
LAHAGDAVTKAVTVDLNDNQYAALCDFVFNLGAGAFQGSTLLKKLNAGDYAGASDEFPKW
HHHCCCCEEEEEEEEECCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCC
DKATVDGVKKALPGLTKRRAAERTLFLTAEA
CHHHHHHHHHHCCCHHHHHHCCEEEEEEECC
>Mature Secondary Structure 
TRAVNEAGLALTKASEGLRLKSYLCPAHKLTVGYGHTGPDVMDGMTIDEARADELLAAD
CCCCCCCCEEEEECCCCCEEHHHHCCCCEEEEECCCCCCHHHCCCCCCHHHHHHHHHHH
LAHAGDAVTKAVTVDLNDNQYAALCDFVFNLGAGAFQGSTLLKKLNAGDYAGASDEFPKW
HHHCCCCEEEEEEEEECCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCC
DKATVDGVKKALPGLTKRRAAERTLFLTAEA
CHHHHHHHHHHCCCHHHHHHCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]